Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 7014 associations (154 cell types, 4254 gene symbols, 28 tissues); Last updated: 19/02/2019 18:01:34 CET

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Description: A type of macrophage found in the pulmonary alveolus, near the pneumocytes, but separated from the wall. Activity of the alveolar macrophage is relatively high, because they are located at one of the major boundaries between the body and the outside world. They are responsible for removing particles such as dust or microorganisms from the respiratory surfaces.
Synonym(s): Dust cells

Gene expression markers for Alveolar macrophages

Species Official gene symbol UI Sensitivity Marker count Cell type Germ layer Organ Aliases Product description Disease Action
Mm Hs G0S2 0.037 0.022 3 Alveolar macrophages Mesoderm Lungs G0/G1 switch 2 flag
Mm Hs MPP1 0.036 0.05 2 Alveolar macrophages Mesoderm Lungs PEMP,DXS552E membrane palmitoylated protein 1 flag
Mm Hs CXCL2 0.033 0.148 3 Alveolar macrophages Mesoderm Lungs SCYB2,GROb,MIP-2a,MGSA-b,CINC-2a,GRO2 C-X-C motif chemokine ligand 2 flag
Mm Hs GDA 0.033 0 2 Alveolar macrophages Mesoderm Lungs guanine deaminase flag
Mm BCL2A1B 0.031 0.11 1 Alveolar macrophages Mesoderm Lungs B cell leukemia/lymphoma 2 related protein A1b flag
Mm Hs CD36 0.029 0.083 7 Alveolar macrophages Mesoderm Lungs SCARB3,GPIV,GP4,GP3B CD36 molecule Yflag
Mm Hs CCL3 0.028 0.034 4 Alveolar macrophages Mesoderm Lungs G0S19-1,LD78ALPHA,MIP-1-alpha,SCYA3 C-C motif chemokine ligand 3 Yflag
Mm CAR4 0.027 0.082 3 Alveolar macrophages Mesoderm Lungs carbonic anhydrase 4 flag
Mm Hs MRC1 0.025 0.182 5 Alveolar macrophages Mesoderm Lungs CLEC13D,CD206,bA541I19.1,CLEC13DL,MRC1L1 mannose receptor C-type 1 flag
Mm Hs CLEC7A 0.025 0.275 1 Alveolar macrophages Mesoderm Lungs dectin-1,hDectin-1,CD369,SCARE2,CLECSF12 C-type lectin domain containing 7A Yflag
Mm Hs TNFAIP2 0.024 0.184 2 Alveolar macrophages Mesoderm Lungs B94,EXOC3L3 TNF alpha induced protein 2 flag
Mm Hs IL1B 0.022 0.103 4 Alveolar macrophages Mesoderm Lungs IL1F2,IL-1B,IL1-BETA interleukin 1 beta Yflag
Mm Hs TRIM25 0.022 0.105 1 Alveolar macrophages Mesoderm Lungs EFP,RNF147,ZNF147 tripartite motif containing 25 flag
Mm BCL2A1D 0.02 0.174 1 Alveolar macrophages Mesoderm Lungs B cell leukemia/lymphoma 2 related protein A1d flag
Mm Hs GAL 0.02 0 3 Alveolar macrophages Mesoderm Lungs GMAP,GAL-GMAP,GLNN,GALN galanin and GMAP prepropeptide Yflag
Mm LYZ1 0.02 0.132 3 Alveolar macrophages Mesoderm Lungs lysozyme 1 flag
Mm WFDC21 0.02 0.196 2 Alveolar macrophages Mesoderm Lungs WAP four-disulfide core domain 21 flag
Mm CHIL3 0.02 0.219 2 Alveolar macrophages Mesoderm Lungs chitinase-like 3 flag
Mm Hs MCEMP1 0.017 0.244 2 Alveolar macrophages Mesoderm Lungs MGC132456,C19orf59 mast cell expressed membrane protein 1 flag
Mm Hs PLET1 0.015 0 1 Alveolar macrophages Mesoderm Lungs C11orf34 placenta expressed transcript 1 flag
Mm Hs CSF2RB 0.014 0 2 Alveolar macrophages Mesoderm Lungs IL5RB,CD131,betaGMR,IL3RB colony stimulating factor 2 receptor beta common subunit Yflag
Mm Hs GPNMB 0.011 0.162 3 Alveolar macrophages Mesoderm Lungs NMB,HGFIN glycoprotein nmb flag
Mm Hs TLR2 0.009 0.248 6 Alveolar macrophages Mesoderm Lungs TIL4,CD282 toll like receptor 2 Yflag
Mm EAR2 0.008 0.563 4 Alveolar macrophages Mesoderm Lungs eosinophil-associated, ribonuclease A family, member 2 flag
Mm Hs KLHDC4 0.007 0.574 1 Alveolar macrophages Mesoderm Lungs DKFZp434G0522 kelch domain containing 4 flag
Mm Hs ITGAX 0.006 0.525 6 Alveolar macrophages Mesoderm Lungs CD11c,CD11C integrin subunit alpha X flag
Mm Hs MARCO 0.003 0.439 2 Alveolar macrophages Mesoderm Lungs SCARA2,SR-A6 macrophage receptor with collagenous structure flag
Mm EAR1 0.003 0 2 Alveolar macrophages Mesoderm Lungs eosinophil-associated, ribonuclease A family, member 1 flag
Mm Hs OLR1 0.003 0.971 1 Alveolar macrophages Mesoderm Lungs LOX-1,SCARE1,CLEC8A oxidized low density lipoprotein receptor 1 Yflag
Mm BGLAP3 0.002 0.219 1 Alveolar macrophages Mesoderm Lungs bone gamma-carboxyglutamate protein 3 flag
Mm Hs S100A4 0 4 Alveolar macrophages Mesoderm Lungs P9KA,18A2,PEL98,42A,CAPL S100 calcium binding protein A4 flag

Datasets with computationally identified Alveolar macrophages

SRA SRS tissue cluster cell type p-value FDR View
SRA711898 SRS3349280 Tonsil 7 Alveolar macrophages 1.88E-5 2.17E-3 view data
SRA550869 SRS2093772 Aortic leukocytes 7 Alveolar macrophages 7.39E-7 4.55E-4 view data
SRA638923 SRS2797072 Lung 3 Alveolar macrophages 1.28E-12 1.97E-10 view data
SRA638923 SRS2797073 Lung 5 Alveolar macrophages 5.69E-11 7.97E-9 view data
SRA638923 SRS2797074 Liver 4 Alveolar macrophages 4.33E-7 1.11E-4 view data
SRA638923 SRS2797079 Lung 3 Alveolar macrophages 5.31E-13 1.47E-10 view data
SRA555753 SRS2135627 Neonatal mouse stomach explants 6 Alveolar macrophages 1.12E-13 1.59E-11 view data
SRA611634 SRS2532205 Lung 1 Alveolar macrophages 5.34E-20 4.11E-17 view data
SRA611634 SRS2532205 Lung 5 Alveolar macrophages 5.52E-11 1.21E-8 view data
SRA611634 SRS2532205 Lung 16 Alveolar macrophages 4.14E-16 1.42E-13 view data
SRA611634 SRS2532206 Lung 1 Alveolar macrophages 3.31E-19 1.13E-16 view data
SRA611634 SRS2532207 Lung 8 Alveolar macrophages 9.91E-13 2.03E-10 view data
SRA611634 SRS2532208 Lung 2 Alveolar macrophages 1.56E-14 1.44E-11 view data
SRA611634 SRS2532209 Lung 2 Alveolar macrophages 7.00E-16 4.09E-13 view data
SRA611634 SRS2532210 Lung 7 Alveolar macrophages 4.88E-18 3.00E-15 view data
SRA739096 SRS3545826 Lung 0 Alveolar macrophages 2.97E-22 7.62E-20 view data
SRA739096 SRS3545826 Lung 1 Alveolar macrophages 2.04E-22 5.88E-20 view data
SRA739096 SRS3545826 Lung 2 Alveolar macrophages 5.58E-26 4.30E-23 view data
SRA739096 SRS3545826 Lung 3 Alveolar macrophages 3.91E-18 7.52E-16 view data
SRA739096 SRS3545826 Lung 4 Alveolar macrophages 2.40E-23 7.92E-21 view data
SRA739096 SRS3545826 Lung 5 Alveolar macrophages 3.58E-24 1.65E-21 view data
SRA739096 SRS3545826 Lung 6 Alveolar macrophages 3.20E-26 3.69E-23 view data
SRA739096 SRS3545826 Lung 7 Alveolar macrophages 9.46E-22 2.19E-19 view data
SRA739096 SRS3545826 Lung 8 Alveolar macrophages 2.03E-25 1.17E-22 view data
SRA739096 SRS3545826 Lung 9 Alveolar macrophages 9.95E-24 3.83E-21 view data
SRA739096 SRS3545826 Lung 10 Alveolar macrophages 2.19E-26 3.69E-23 view data
SRA739096 SRS3545826 Lung 11 Alveolar macrophages 2.24E-13 3.70E-11 view data
SRA739096 SRS3545826 Lung 12 Alveolar macrophages 1.20E-17 2.13E-15 view data
SRA739096 SRS3545826 Lung 13 Alveolar macrophages 3.30E-19 6.93E-17 view data
SRA739096 SRS3545827 Lung 0 Alveolar macrophages 1.96E-37 3.93E-34 view data
SRA739096 SRS3545827 Lung 1 Alveolar macrophages 2.75E-34 2.75E-31 view data
SRA739096 SRS3545827 Lung 2 Alveolar macrophages 2.58E-22 5.17E-20 view data
SRA739096 SRS3545827 Lung 3 Alveolar macrophages 1.93E-31 5.51E-29 view data
SRA739096 SRS3545827 Lung 4 Alveolar macrophages 3.99E-32 2.00E-29 view data
SRA739096 SRS3545827 Lung 5 Alveolar macrophages 4.81E-29 1.07E-26 view data
SRA739096 SRS3545827 Lung 7 Alveolar macrophages 4.42E-31 1.11E-28 view data
SRA739096 SRS3545827 Lung 8 Alveolar macrophages 2.39E-16 4.34E-14 view data
SRA739096 SRS3545827 Lung 9 Alveolar macrophages 1.07E-31 4.30E-29 view data
SRA739096 SRS3545827 Lung 10 Alveolar macrophages 1.56E-31 5.19E-29 view data
SRA739096 SRS3545827 Lung 11 Alveolar macrophages 2.26E-33 1.51E-30 view data
SRA640325 SRS2769051 Lung proximal airway stromal cells 19 Alveolar macrophages 6.24E-6 4.06E-4 view data
SRA665588 SRS3034027 Lung 3 Alveolar macrophages 1.62E-10 5.00E-8 view data
SRA665588 SRS3034028 Lung 2 Alveolar macrophages 3.69E-9 1.13E-6 view data
SRA665588 SRS3034028 Lung 6 Alveolar macrophages 6.00E-11 3.70E-8 view data
SRA665588 SRS3034030 Lung 0 Alveolar macrophages 2.28E-5 3.04E-3 view data
SRA665588 SRS3034030 Lung 4 Alveolar macrophages 1.29E-14 6.48E-12 view data
SRA665588 SRS3034030 Lung 5 Alveolar macrophages 2.30E-15 1.53E-12 view data
SRA665588 SRS3034031 Lung 0 Alveolar macrophages 7.87E-15 5.45E-12 view data
SRA665588 SRS3034031 Lung 1 Alveolar macrophages 2.12E-10 9.80E-8 view data
SRA665588 SRS3034032 Lung 0 Alveolar macrophages 1.25E-11 5.80E-9 view data
SRA665588 SRS3034032 Lung 1 Alveolar macrophages 1.07E-16 9.92E-14 view data
SRA665588 SRS3034033 Lung 0 Alveolar macrophages 4.26E-8 9.84E-6 view data
SRA665588 SRS3034033 Lung 1 Alveolar macrophages 9.21E-9 2.84E-6 view data
SRA665588 SRS3034034 Lung 0 Alveolar macrophages 2.11E-9 7.18E-7 view data
SRA665588 SRS3034034 Lung 1 Alveolar macrophages 5.83E-11 6.29E-8 view data
SRA665588 SRS3034034 Lung 2 Alveolar macrophages 3.99E-14 8.61E-11 view data
SRA665588 SRS3034034 Lung 5 Alveolar macrophages 4.72E-5 5.09E-3 view data
SRA665588 SRS3034034 Lung 9 Alveolar macrophages 1.60E-9 7.18E-7 view data
SRA665588 SRS3034034 Lung 13 Alveolar macrophages 5.13E-8 1.38E-5 view data
SRA665588 SRS3034035 Lung 0 Alveolar macrophages 5.84E-11 4.10E-8 view data
SRA665588 SRS3034035 Lung 2 Alveolar macrophages 3.48E-15 5.89E-12 view data
SRA665588 SRS3034035 Lung 3 Alveolar macrophages 3.29E-7 9.30E-5 view data
SRA665588 SRS3034036 Lung 0 Alveolar macrophages 1.30E-19 1.70E-16 view data
SRA665588 SRS3034036 Lung 1 Alveolar macrophages 3.54E-16 2.32E-13 view data
SRA665588 SRS3034036 Lung 2 Alveolar macrophages 4.09E-7 6.70E-5 view data
SRA665588 SRS3034036 Lung 7 Alveolar macrophages 9.70E-14 5.08E-11 view data
SRA665588 SRS3034036 Lung 9 Alveolar macrophages 7.09E-10 2.65E-7 view data
SRA665588 SRS3034036 Lung 16 Alveolar macrophages 5.58E-18 4.87E-15 view data
SRA765376 SRS3733218 Heart macrophages and dendritic cells 12 Alveolar macrophages 3.78E-4 3.71E-2 view data
SRA653146 SRS3044261 Lung 6 Alveolar macrophages 2.54E-21 1.25E-18 view data
SRA653146 SRS3044260 Lung 9 Alveolar macrophages 7.20E-4 3.59E-2 view data
SRA653146 SRS3044260 Lung 10 Alveolar macrophages 2.01E-17 5.68E-15 view data
SRA653146 SRS3044252 Lung 0 Alveolar macrophages 8.97E-23 3.92E-20 view data
SRA653146 SRS3044253 Lung 4 Alveolar macrophages 2.84E-24 1.02E-21 view data
SRA653146 SRS3044253 Lung 18 Alveolar macrophages 2.80E-18 6.03E-16 view data