Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 7014 associations (154 cell types, 4254 gene symbols, 28 tissues); Last updated: 19/02/2019 18:01:34 CET

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Description: A type of immune cell that has granules (small particles) with enzymes that are released during allergic reactions. Basophils are the least common of the granulocytes, representing about 0.5 to 1% of circulating white blood cells.

Gene expression markers for Basophils

Species Official gene symbol UI Sensitivity Marker count Cell type Germ layer Organ Aliases Product description Disease Action
Mm Hs LTC4S 0.032 0 5 Basophils Mesoderm Immune system MGC33147 leukotriene C4 synthase Yflag
Mm Hs CD69 0.025 0 9 Basophils Mesoderm Immune system CLEC2C CD69 molecule flag
Mm Hs ITGAM 0.02 0 7 Basophils Mesoderm Immune system CD11b,CR3A,CD11B integrin subunit alpha M Yflag
Mm Hs ITGB7 0.019 0 2 Basophils Mesoderm Immune system integrin subunit beta 7 flag
Mm Hs ITGAL 0.009 0 5 Basophils Mesoderm Immune system CD11A integrin subunit alpha L flag
Mm Hs CPA3 0.007 0 3 Basophils Mesoderm Immune system carboxypeptidase A3 flag
Mm Hs ITGAX 0.006 0 6 Basophils Mesoderm Immune system CD11c,CD11C integrin subunit alpha X flag
Mm Hs IL3RA 0.005 0 2 Basophils Mesoderm Immune system CD123 interleukin 3 receptor subunit alpha flag
Mm Hs FCER1A 0.004 0 1 Basophils Mesoderm Immune system FCE1A Fc fragment of IgE receptor Ia flag
Hs IL4R 0.003 0 2 Basophils Mesoderm Immune system CD124 interleukin 4 receptor Yflag
Mm Hs IL4 0.002 0 5 Basophils Mesoderm Immune system BSF1,IL-4,BCGF1,BCGF-1,MGC79402 interleukin 4 flag
Mm Hs ENPP3 0.001 0 2 Basophils Mesoderm Immune system PD-IBETA,gp130RB13-6,B10,CD203c,PDNP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 flag
Mm Hs CCR3 0.001 0 7 Basophils Mesoderm Immune system CC-CKR-3,CKR3,CD193,CMKBR3 C-C motif chemokine receptor 3 flag
Mm Hs TLR4 0 0 6 Basophils Mesoderm Immune system hToll,CD284,TLR-4,ARMD10 toll like receptor 4 Yflag
Mm MCPT8 0 1 Basophils Mesoderm Immune system mast cell protease 8 flag
Mm PRSS34 0 1 Basophils Mesoderm Immune system protease, serine 34 flag
Mm Hs MS4A2 0 2 Basophils Mesoderm Immune system MS4A1,FCER1B,APY membrane spanning 4-domains A2 Yflag
Mm Hs MS4A3 0 1 Basophils Mesoderm Immune system HTM4,CD20L membrane spanning 4-domains A3 flag
Mm Hs HDC 0 6 Basophils Mesoderm Immune system histidine decarboxylase Yflag
Mm Hs GATA2 0 5 Basophils Mesoderm Immune system NFE1B GATA binding protein 2 Yflag
Mm Hs S100A8 0 11 Basophils Mesoderm Immune system P8,CGLA,CAGA S100 calcium binding protein A8 flag

Datasets with computationally identified Basophils

SRA SRS tissue cluster cell type p-value FDR View
SRA638923 SRS2797044 Bone marrow 8 Basophils 2.01E-8 1.24E-5 view data
SRA638923 SRS2797046 Bone marrow 10 Basophils 6.74E-8 3.63E-5 view data
SRA638923 SRS2797047 Bone marrow 9 Basophils 1.57E-8 7.23E-6 view data
SRA638923 SRS2960038 Pancreas 11 Basophils 8.82E-6 9.59E-4 view data
SRA585365 SRS2345687 Pancreas 28 Basophils 1.31E-8 3.50E-6 view data
SRA585365 SRS3297651 Pancreas 31 Basophils 1.11E-10 2.23E-8 view data
SRA585365 SRS3297652 Pancreas 27 Basophils 5.82E-12 1.48E-9 view data
SRA740174 SRS3548783 Bone marrow 9 Basophils 1.36E-4 3.40E-2 view data
SRA808665 SRS4036272 Bone marrow 8 Basophils 1.44E-8 7.39E-6 view data
SRA808665 SRS4036273 Bone marrow 10 Basophils 1.16E-9 1.01E-6 view data
SRA808665 SRS4036274 Bone marrow 10 Basophils 1.63E-9 8.38E-7 view data
SRA653146 SRS3044246 Marrow 17 Basophils 6.23E-12 1.07E-9 view data
SRA653146 SRS3044247 Marrow 15 Basophils 3.81E-10 5.57E-8 view data