Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 7980 associations (170 cell types, 4578 gene symbols, 27 tissues); Last updated: 15/04/2019 11:41:03 CET

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Description: A type of immune cell that has granules (small particles) with enzymes that are released during allergic reactions. Basophils are the least common of the granulocytes, representing about 0.5 to 1% of circulating white blood cells.

Gene expression markers for Basophils

Vote(s) Species Official gene symbol UI Sensitivity Marker count Cell type Germ layer Organ Aliases Product description Disease Action
0
Mm Hs HIST1H1D 0.006 0.022 1 Basophils Mesoderm Immune system H1.3,H1d,H1s-2,H1F3 histone cluster 1 H1 family member d flag
0
Mm NT5C3 0.071 0 1 Basophils Mesoderm Immune system 5'-nucleotidase, cytosolic III flag
0
Mm Hs NPL 0.016 0 1 Basophils Mesoderm Immune system NPL1,DHDPS1,C1orf13 N-acetylneuraminate pyruvate lyase flag
0
Mm Hs NFIL3 0.013 0.01 1 Basophils Mesoderm Immune system E4BP4,NFIL3A,NF-IL3A,IL3BP1 nuclear factor, interleukin 3 regulated flag
0
Mm Hs MBOAT1 0.006 0.048 1 Basophils Mesoderm Immune system MGC44669,dJ434O11.1,LPEAT1,OACT1 membrane bound O-acyltransferase domain containing 1 flag
0
Mm Hs LAMA5 0.008 0 2 Basophils Mesoderm Immune system laminin subunit alpha 5 flag
0
Mm Hs L1CAM 0.019 0 5 Basophils Mesoderm Immune system CD171,HSAS1,SPG1,HSAS,MIC5 L1 cell adhesion molecule Yflag
0
Mm Hs JAZF1 0.003 0 1 Basophils Mesoderm Immune system TIP27,DKFZp761K2222,ZNF802 JAZF zinc finger 1 flag
0
Mm Hs INF2 0.013 0.005 1 Basophils Mesoderm Immune system MGC13251,C14orf151,C14orf173 inverted formin, FH2 and WH2 domain containing Yflag
0
Mm Hs IFITM1 0.059 0 3 Basophils Mesoderm Immune system 9-27,CD225,DSPA2a,IFI17 interferon induced transmembrane protein 1 flag
0
Mm Hs HIST1H2AC 0.01 0.016 1 Basophils Mesoderm Immune system H2AFL histone cluster 1 H2A family member c flag
0
Mm Hs OSBPL5 0.003 0 1 Basophils Mesoderm Immune system KIAA1534,ORP5,OBPH1 oxysterol binding protein like 5 flag
0
Mm Hs HGF 0.002 0 3 Basophils Mesoderm Immune system F-TCF,HGFB,HPTA,DFNB39 hepatocyte growth factor Yflag
0
GPR97 0 0 1 Basophils Mesoderm Immune system flag
0
Mm Hs GPR183 0.017 0.027 3 Basophils Mesoderm Immune system EBI2 G protein-coupled receptor 183 flag
0
4 GM9895 0 0 1 Basophils Mesoderm Immune system predicted gene 9895 flag
0
Mm Hs GABBR1 0.141 0 1 Basophils Mesoderm Immune system hGB1a,GPRC3A gamma-aminobutyric acid type B receptor subunit 1 flag
0
Mm Hs FBXO9 0.061 0.006 1 Basophils Mesoderm Immune system FBX9,NY-REN-57 F-box protein 9 flag
0
Mm Hs FAR2 0.004 0.029 1 Basophils Mesoderm Immune system FLJ10462,SDR10E2,MLSTD1 fatty acyl-CoA reductase 2 flag
0
Mm Hs FADS1 0.052 0 1 Basophils Mesoderm Immune system D5D,FADSD5,TU12,FADS6,LLCDL1 fatty acid desaturase 1 flag
0
Mm Hs E2F8 0.002 0 1 Basophils Mesoderm Immune system FLJ23311 E2F transcription factor 8 flag
0
Mm Hs SLC26A3 0.001 0 2 Basophils Mesoderm Immune system DRA,CLD solute carrier family 26 member 3 Yflag
0
Mm Hs ID1 0.143 0.002 2 Basophils Mesoderm Immune system dJ857M17.1.2,bHLHb24 inhibitor of DNA binding 1, HLH protein flag
0
Mm Hs WRN 0.004 0.008 2 Basophils Mesoderm Immune system RECQL2,RECQ3 Werner syndrome RecQ like helicase Yflag
0
Mm Hs UNC93A 0 0 1 Basophils Mesoderm Immune system dJ366N23.2,dJ366N23.1 unc-93 homolog A flag
0
Mm Hs TEC 0.001 0.003 1 Basophils Mesoderm Immune system PSCTK4 tec protein tyrosine kinase flag
0
Mm Hs TULP3 0.008 0 1 Basophils Mesoderm Immune system TUBL3 tubby like protein 3 flag
0
Hs SUPT3H 0.004 0 1 Basophils Mesoderm Immune system SPT3,SPT3L SPT3 homolog, SAGA and STAGA complex component flag
0
Mm Hs ST6GALNAC5 0.008 0 1 Basophils Mesoderm Immune system MGC3184,ST6GalNAcV,SIAT7E ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 flag
0
Mm Hs SNCAIP 0.003 0 1 Basophils Mesoderm Immune system SYPH1 synuclein alpha interacting protein Yflag
0
Mm Hs SLC26A8 0.003 0 1 Basophils Mesoderm Immune system solute carrier family 26 member 8 Yflag
0
Mm DEFB40 0 0 1 Basophils Mesoderm Immune system defensin beta 40 flag
0
Mm Hs RNF39 0.001 0 1 Basophils Mesoderm Immune system HZFw1,LIRF ring finger protein 39 flag
0
Mm Hs PLG 0.002 0.003 1 Basophils Mesoderm Immune system plasminogen Yflag
0
Mm Hs PLEKHG5 0.004 0.016 1 Basophils Mesoderm Immune system KIAA0720,Syx,GEF720,Tech pleckstrin homology and RhoGEF domain containing G5 Yflag
0
Hs PIGY 0 0 1 Basophils Mesoderm Immune system MGC14156 phosphatidylinositol glycan anchor biosynthesis class Y Yflag
0
Mm Hs PERP 0.078 0.003 3 Basophils Mesoderm Immune system PIGPC1,dJ496H19.1,KCP1,THW,KRTCAP1 PERP, TP53 apoptosis effector flag
0
Mm Hs PDZD4 0.005 0 1 Basophils Mesoderm Immune system KIAA1444,LU1,FLJ34125,PDZRN4L,LNX5,PDZK4 PDZ domain containing 4 flag
0
Mm Hs PDK3 0.016 0 1 Basophils Mesoderm Immune system pyruvate dehydrogenase kinase 3 Yflag
0
Mm Hs P2RY1 0.003 0 2 Basophils Mesoderm Immune system P2Y1,SARCC purinergic receptor P2Y1 flag
0
Mm Hs OTUB2 0.007 0 2 Basophils Mesoderm Immune system FLJ21916,MGC3102,C14orf137 OTU deubiquitinase, ubiquitin aldehyde binding 2 flag
0
Mm Hs ITGAX 0.006 0 8 Basophils Mesoderm Immune system CD11c,CD11C integrin subunit alpha X flag
0
Mm Hs CCL3 0.029 0.021 7 Basophils Mesoderm Immune system G0S19-1,LD78ALPHA,MIP-1-alpha,SCYA3 C-C motif chemokine ligand 3 Yflag
0
Mm Hs GATA2 0.019 0.031 5 Basophils Mesoderm Immune system NFE1B GATA binding protein 2 Yflag
0
Mm Hs HDC 0.017 0.035 5 Basophils Mesoderm Immune system histidine decarboxylase Yflag
0
Mm Hs MS4A3 0.014 0.004 1 Basophils Mesoderm Immune system HTM4,CD20L membrane spanning 4-domains A3 flag
0
Mm Hs MS4A2 0.002 0.237 2 Basophils Mesoderm Immune system MS4A1,FCER1B,APY membrane spanning 4-domains A2 Yflag
0
Mm PRSS34 0.002 0.207 1 Basophils Mesoderm Immune system protease, serine 34 flag
0
Mm MCPT8 0.003 0.227 1 Basophils Mesoderm Immune system mast cell protease 8 flag
0
Mm Hs IL4 0.002 0 4 Basophils Mesoderm Immune system BSF1,IL-4,BCGF1,BCGF-1,MGC79402 interleukin 4 flag
0
Mm Hs ITGB7 0.027 0.018 2 Basophils Mesoderm Immune system integrin subunit beta 7 flag
0
Hs IL4R 0.003 0 4 Basophils Mesoderm Immune system CD124 interleukin 4 receptor Yflag
0
Mm Hs CD33 0.012 0 7 Basophils Mesoderm Immune system SIGLEC3,SIGLEC-3,FLJ00391 CD33 molecule flag
0
Mm Hs ITGAM 0.024 0.003 8 Basophils Mesoderm Immune system CD11b,CR3A,CD11B integrin subunit alpha M Yflag
0
Mm Hs ITGAL 0.012 0.005 5 Basophils Mesoderm Immune system CD11A integrin subunit alpha L flag
0
Mm Hs CPA3 0.008 0.073 3 Basophils Mesoderm Immune system carboxypeptidase A3 flag
0
Mm Hs LTC4S 0.033 0 5 Basophils Mesoderm Immune system MGC33147 leukotriene C4 synthase Yflag
0
Mm Hs TLR4 0 0 7 Basophils Mesoderm Immune system hToll,CD284,TLR-4,ARMD10 toll like receptor 4 Yflag
0
Mm Hs FCER1A 0.004 0 3 Basophils Mesoderm Immune system FCE1A Fc fragment of IgE receptor Ia flag
0
Mm Hs ENPP3 0.001 0 2 Basophils Mesoderm Immune system PD-IBETA,gp130RB13-6,B10,CD203c,PDNP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 flag
0
Mm Hs CCR3 0.001 0 7 Basophils Mesoderm Immune system CC-CKR-3,CKR3,CD193,CMKBR3 C-C motif chemokine receptor 3 flag
0
Mm Hs IL3RA 0.007 0.054 3 Basophils Mesoderm Immune system CD123 interleukin 3 receptor subunit alpha flag
0
Mm Hs ACSS2 0.007 0.01 2 Basophils Mesoderm Immune system ACSA,AceCS,dJ1161H23.1,ACAS2 acyl-CoA synthetase short chain family member 2 flag
0
Mm Hs CEBPA 0.018 0.013 6 Basophils Mesoderm Immune system C/EBP-alpha,CEBP CCAAT enhancer binding protein alpha Yflag
0
Mm CCL9 0.033 0.018 6 Basophils Mesoderm Immune system chemokine (C-C motif) ligand 9 flag
0
Mm Hs CCL4 0.039 0.018 4 Basophils Mesoderm Immune system MIP-1-beta,Act-2,AT744.1,SCYA4 C-C motif chemokine ligand 4 flag
0
Mm Hs CABLES1 0.001 0 1 Basophils Mesoderm Immune system HsT2563,FLJ35924 Cdk5 and Abl enzyme substrate 1 flag
0
Mm Hs BMP4 0.017 0 6 Basophils Mesoderm Immune system BMP2B bone morphogenetic protein 4 Yflag
0
Mm Hs BACE1 0.023 0.003 3 Basophils Mesoderm Immune system BACE beta-secretase 1 flag
0
Mm Hs AQP9 0.004 0.135 3 Basophils Mesoderm Immune system SSC1,HsT17287 aquaporin 9 flag
0
Mm ALOX8 0 0 1 Basophils Mesoderm Immune system arachidonate 8-lipoxygenase flag
0
Mm Hs ADORA2B 0.001 0 1 Basophils Mesoderm Immune system adenosine A2b receptor flag
0
Mm Hs CD69 0.026 0.038 11 Basophils Mesoderm Immune system CLEC2C CD69 molecule flag
0
Mm Hs GRM6 0.003 0.02 2 Basophils Mesoderm Immune system GPRC1F,mGlu6,MGLUR6,CSNB1B glutamate metabotropic receptor 6 Yflag
0
Mm Hs GPC4 0.01 0 1 Basophils Mesoderm Immune system K-glypican glypican 4 flag
0
Mm Hs FADS2 0.009 0 1 Basophils Mesoderm Immune system FADSD6,D6D,TU13,DES6,SLL0262,LLCDL2 fatty acid desaturase 2 flag
0
Mm Hs DNASE2B 0.001 0 1 Basophils Mesoderm Immune system DLAD deoxyribonuclease 2 beta flag
0
Mm MRGPRA6 0 0 1 Basophils Mesoderm Immune system MAS-related GPR, member A6 flag
0
Mm Hs IGFBP7 0.167 0.001 3 Basophils Mesoderm Immune system MAC25,IGFBP-7,FSTL2 insulin like growth factor binding protein 7 Yflag
0
Mm Hs HTR1B 0.002 0.027 1 Basophils Mesoderm Immune system 5-HT1B,HTR1D2,5-HT1DB 5-hydroxytryptamine receptor 1B flag
0
Mm Hs CDH1 0.049 0 14 Basophils Mesoderm Immune system uvomorulin,CD324,UVO cadherin 1 Yflag
0
Mm Hs CD44 0.122 0.002 9 Basophils Mesoderm Immune system IN,MC56,Pgp1,CD44R,HCELL,CSPG8,MIC4,MDU2,MDU3 CD44 molecule (Indian blood group) Yflag

Datasets with computationally identified Basophils

SRA SRS tissue cluster cell type p-value FDR View
SRA638923 SRS2960038 Pancreas 11 Basophils 5.66E-5 9.62E-3 view data
SRA611634 SRS2532209 Lung 13 Basophils 6.59E-8 3.36E-5 view data
SRA585365 SRS2345687 Pancreas 29 Basophils 7.23E-11 9.21E-8 view data
SRA585365 SRS3297651 Pancreas 28 Basophils 1.34E-10 8.08E-8 view data
SRA653146 SRS3044261 Lung 14 Basophils 1.42E-8 2.41E-6 view data
SRA653146 SRS3044246 Marrow 16 Basophils 2.49E-10 6.36E-8 view data
SRA653146 SRS3044247 Marrow 15 Basophils 4.72E-13 1.44E-10 view data
SRA653146 SRS2874278 Bone marrow 16 Basophils 6.35E-23 2.93E-20 view data
SRA834897 SRS4252175 Macrophage from E14.5 31 Basophils 2.31E-10 8.64E-8 view data
SRA834897 SRS4252176 Bone marrow 18 Basophils 2.18E-7 5.29E-5 view data