Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 7014 associations (154 cell types, 4254 gene symbols, 28 tissues); Last updated: 19/02/2019 18:01:34 CET

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Description: Bergmann glia are located in the cerebellum in which they can be seen very early in development, and play an essential role in the migration of the cerebellar Purkinje cells and granule cells. Bergmann glia are characterized by multiple radial branches, as opposed to a single process in other radial glia in other brain areas, that spans the width of the cerebellar cortex. Since Bergmann glia appear to persist in the cerebellum, and perform many of the roles characteristic of astrocytes, they have also been

Gene expression markers for Bergmann glia

Species Official gene symbol UI Sensitivity Marker count Cell type Germ layer Organ Aliases Product description Disease Action
Mm Hs TMEM47 0.049 0.004 2 Bergmann glia Ectoderm Brain BCMP1,DKFZP761J17121,DKFZp564E153,VAB-9,TM4SF10 transmembrane protein 47 flag
Mm Hs TSPAN15 0.049 0.003 3 Bergmann glia Ectoderm Brain NET-7,TM4SF15 tetraspanin 15 flag
Mm Hs CXCL14 0.046 0.016 5 Bergmann glia Ectoderm Brain BRAK,NJAC,bolekine,Kec,MIP-2g,BMAC,SCYB14 C-X-C motif chemokine ligand 14 flag
Mm Hs MPP6 0.046 0.005 1 Bergmann glia Ectoderm Brain PALS2,VAM-1,p55T membrane palmitoylated protein 6 flag
Mm Hs TST 0.046 0 4 Bergmann glia Ectoderm Brain thiosulfate sulfurtransferase flag
Mm Hs GPR37L1 0.043 0.017 4 Bergmann glia Ectoderm Brain ETBR-LP-2 G protein-coupled receptor 37 like 1 flag
Mm Hs RGS7BP 0.042 0.002 5 Bergmann glia Ectoderm Brain R7BP regulator of G protein signaling 7 binding protein flag
Mm Hs SCRG1 0.04 0.014 5 Bergmann glia Ectoderm Brain SCRG-1 stimulator of chondrogenesis 1 flag
Mm Hs LUZP2 0.039 0.015 4 Bergmann glia Ectoderm Brain leucine zipper protein 2 flag
Mm Hs HES5 0.038 0.012 4 Bergmann glia Ectoderm Brain bHLHb38 hes family bHLH transcription factor 5 flag
Mm Hs NKAIN4 0.038 0.02 3 Bergmann glia Ectoderm Brain bA261N11.2,FAM77A,C20orf58 sodium/potassium transporting ATPase interacting 4 flag
Mm Hs HEPACAM 0.037 0 3 Bergmann glia Ectoderm Brain FLJ25530,hepaCAM,GLIALCAM hepatic and glial cell adhesion molecule Yflag
Mm Hs FRRS1L 0.036 0.006 3 Bergmann glia Ectoderm Brain CG-6,C9orf4 ferric chelate reductase 1 like flag
Mm Hs TNC 0.036 0.004 5 Bergmann glia Ectoderm Brain MGC167029,HXB,DFNA56 tenascin C Yflag
Mm Hs GABRB1 0.034 0.006 1 Bergmann glia Ectoderm Brain gamma-aminobutyric acid type A receptor beta1 subunit flag
Mm Hs SLC4A4 0.034 0.014 4 Bergmann glia Ectoderm Brain NBC1,HNBC1,NBC2,pNBC,hhNMC,SLC4A5 solute carrier family 4 member 4 Yflag
Mm Hs CDC42EP4 0.031 0.01 1 Bergmann glia Ectoderm Brain KAIA1777,BORG4,MGC3740,MGC17125 CDC42 effector protein 4 flag
Mm Hs AQP4 0.028 0.019 7 Bergmann glia Ectoderm Brain MIWC aquaporin 4 flag
Mm Hs HOPX 0.027 0.026 5 Bergmann glia Ectoderm Brain LAGY,OB1,NECC1,SMAP31 HOP homeobox flag
Mm Hs CLDN10 0.026 0.025 5 Bergmann glia Ectoderm Brain OSP-L,CPETRL3 claudin 10 flag
Mm Hs DTNA 0.025 0.008 1 Bergmann glia Ectoderm Brain D18S892E,DTN,DTN-1,DTN-2,DTN-3,DRP3 dystrobrevin alpha Yflag
Mm Hs BTBD17 0.025 0.026 1 Bergmann glia Ectoderm Brain LGALS3BPL,BTBD17A,TANGO10A BTB domain containing 17 flag
Mm Hs TRIL 0.023 0.02 2 Bergmann glia Ectoderm Brain KIAA0644 TLR4 interactor with leucine rich repeats flag
Mm Hs FAM181B 0.023 0.032 2 Bergmann glia Ectoderm Brain LOC220382,MGC33846 family with sequence similarity 181 member B flag
Mm Hs ACSBG1 0.022 0.033 4 Bergmann glia Ectoderm Brain BGM,FLJ30320,MGC14352,BG1,KIAA0631,hBG1,hsBG acyl-CoA synthetase bubblegum family member 1 flag
Mm Hs BAALC 0.021 0.023 3 Bergmann glia Ectoderm Brain BAALC, MAP3K1 and KLF4 binding flag
Mm Hs NTSR2 0.021 0.025 2 Bergmann glia Ectoderm Brain NTR2 neurotensin receptor 2 flag
Mm Hs TIMP4 0.02 0.023 2 Bergmann glia Ectoderm Brain TIMP metallopeptidase inhibitor 4 flag
Mm Hs ABI3BP 0.018 0.005 3 Bergmann glia Ectoderm Brain NESHBP,DKFZP586L2024,TARSH ABI family member 3 binding protein flag
Mm Hs FAM107A 0.015 0.043 1 Bergmann glia Ectoderm Brain DRR1,TU3A family with sequence similarity 107 member A flag
Mm Hs GPD1 0.015 0 2 Bergmann glia Ectoderm Brain glycerol-3-phosphate dehydrogenase 1 Yflag
Mm Hs GFAP 0.015 0.005 9 Bergmann glia Ectoderm Brain FLJ45472 glial fibrillary acidic protein Yflag
Mm Hs NPY 0.015 0 6 Bergmann glia Ectoderm Brain PYY4 neuropeptide Y flag
Mm Hs GRIA4 0.014 0.019 3 Bergmann glia Ectoderm Brain GluA4,GLURD,GLUR4 glutamate ionotropic receptor AMPA type subunit 4 flag
Mm Hs PTCH1 0.013 0.03 5 Bergmann glia Ectoderm Brain BCNS,NBCCS,PTCH patched 1 Yflag
Mm Hs TLCD1 0.012 0.062 1 Bergmann glia Ectoderm Brain TLC domain containing 1 flag
Mm Hs GJB6 0.012 0.022 3 Bergmann glia Ectoderm Brain EDH,CX30,ED2 gap junction protein beta 6 Yflag
Mm Hs A2M 0.011 0 1 Bergmann glia Ectoderm Brain FWP007,S863-7,CPAMD5 alpha-2-macroglobulin Yflag
Mm Hs PREX1 0.011 0.024 1 Bergmann glia Ectoderm Brain KIAA1415,P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 flag
Mm Hs ITIH3 0.009 0.016 2 Bergmann glia Ectoderm Brain H3P inter-alpha-trypsin inhibitor heavy chain 3 flag
Mm Hs ELMO2 0.008 0.019 1 Bergmann glia Ectoderm Brain ELMO-2,KIAA1834,FLJ11656 engulfment and cell motility 2 flag
Mm Hs SLC20A2 0.008 0.06 1 Bergmann glia Ectoderm Brain PiT-2,Glvr-2,Ram-1,MLVAR,GLVR2 solute carrier family 20 member 2 Yflag
Mm Hs IGDCC3 0.006 0 1 Bergmann glia Ectoderm Brain HsT18880,PUNC immunoglobulin superfamily DCC subclass member 3 flag
Mm Hs GRID2 0.005 0 1 Bergmann glia Ectoderm Brain GluD2,GluR-delta-2 glutamate ionotropic receptor delta type subunit 2 Yflag
Mm Hs GDF10 0.004 0.07 2 Bergmann glia Ectoderm Brain BMP-3b growth differentiation factor 10 flag
Mm Hs LCAT 0.004 0.07 2 Bergmann glia Ectoderm Brain lecithin-cholesterol acyltransferase Yflag
Mm Hs GRM3 0.003 0 1 Bergmann glia Ectoderm Brain GPRC1C,mGlu3,MGLUR3 glutamate metabotropic receptor 3 flag
Mm Hs SLC6A9 0.001 0 1 Bergmann glia Ectoderm Brain solute carrier family 6 member 9 flag
Mm Hs GRM2 0 0 1 Bergmann glia Ectoderm Brain GPRC1B,mGlu2,MGLUR2 glutamate metabotropic receptor 2 flag

Datasets with computationally identified Bergmann glia

SRA SRS tissue cluster cell type p-value FDR View
SRA667466 SRS3059947 Dentate gyrus 9 Bergmann glia 8.68E-6 1.19E-3 view data
SRA667466 SRS3059959 Cerebellum 1 Bergmann glia 0.00E+0 0.00E+0 view data
SRA667466 SRS3059960 Cerebellum 1 Bergmann glia 8.22E-42 8.86E-39 view data
SRA667466 SRS3059972 Neo-cortex 7 Bergmann glia 1.68E-22 3.62E-19 view data
SRA667466 SRS3059982 Cerebellum 1 Bergmann glia 1.45E-39 2.68E-36 view data
SRA667466 SRS3059983 Cerebellum 1 Bergmann glia 6.61E-26 9.16E-23 view data