Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Epithelial cells that line the bile ducts.

Gene expression markers for Cholangiocytes

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
2
Mm Hs EPCAM 0.117 0.653 1 0.157 0.104 5 Cholangiocytes Endoderm Liver Ly74,TROP1,GA733-2,EGP34,EGP40,EGP-2,KSA,CD326,Ep-CAM,HEA125,KS1/4,MK-1,MH99,MOC31,323/A3,17-1A,TACST-1,CO-17A,M4S1,MIC18,TACSTD1 epithelial cell adhesion molecule Yflag
2
Mm Hs KRT19 0.088 0.92 1 0.153 0.065 4 Cholangiocytes Endoderm Liver K19,CK19,K1CS,MGC15366 keratin 19 flag
1
Mm Hs ALB 0.008 0.013 NA 0.028 0.004 4 Cholangiocytes Endoderm Liver albumin Yflag
1
Mm Hs SPP1 0.057 0.04 NA 0.054 NA 4 Cholangiocytes Endoderm Liver BSPI,ETA-1,BNSP,OPN secreted phosphoprotein 1 flag
1
Mm Hs ELF3 0.048 0.893 1 0.098 0.033 3 Cholangiocytes Endoderm Liver ESE-1,ERT,ESX E74 like ETS transcription factor 3 flag
0
Mm Hs FXYD2 0.025 NA NA 0.004 0.031 6 Cholangiocytes Endoderm Liver MGC12372,ATP1G1,HOMG2 FXYD domain containing ion transport regulator 2 Yflag
0
Mm Hs TFF3 0.022 0.56 NA 0.033 NA 5 Cholangiocytes Endoderm Liver HITF,ITF trefoil factor 3 flag
0
Mm Hs TFF1 0.006 0.253 NA 0.015 NA 3 Cholangiocytes Endoderm Liver D21S21,pS2,pNR-2,HP1.A,BCEI trefoil factor 1 flag
0
Mm Hs SOX9 0.086 0.12 NA 0.03 NA 8 Cholangiocytes Endoderm Liver SRA1,CMD1,CMPD1 SRY-box 9 Yflag
0
Mm Hs CLDN4 0.047 0.88 0.5 0.11 0.029 5 Cholangiocytes Endoderm Liver CPE-R,WBSCR8,hCPE-R,CPETR,CPETR1 claudin 4 flag
0
Mm Hs MMP7 0.007 0.2 NA 0.021 0.004 4 Cholangiocytes Endoderm Liver PUMP-1,MPSL1 matrix metallopeptidase 7 flag
0
Mm Hs TFF2 0.002 NA NA 0 NA 4 Cholangiocytes Endoderm Liver SML1 trefoil factor 2 flag
0
Mm Hs SCGB3A1 0.006 0.173 NA 0.008 NA 3 Cholangiocytes Endoderm Liver UGRP2,HIN-1,HIN1,LU105,PnSP-2 secretoglobin family 3A member 1 flag
0
Mm Hs AGR2 0.024 0.867 0.5 0.054 0.012 7 Cholangiocytes Endoderm Liver XAG-2,HAG-2,PDIA17 anterior gradient 2, protein disulphide isomerase family member flag
0
Hs CD24 0.039 0.64 NA 0.181 NA 8 Cholangiocytes Endoderm Liver CD24A CD24 molecule flag
0
Mm Hs LCN2 0.043 0.507 NA 0.046 0.042 9 Cholangiocytes Endoderm Liver NGAL,24p3 lipocalin 2 flag
0
Mm Hs CXCL1 0.032 0.32 NA 0.039 0.031 8 Cholangiocytes Endoderm Liver SCYB1,GROa,MGSA-a,NAP-3,MGSA,GRO1,FSP C-X-C motif chemokine ligand 1 flag
0
Hs CXCL6 0.001 0.053 NA 0.004 NA 1 Cholangiocytes Endoderm Liver GCP-2,CKA-3,SCYB6 C-X-C motif chemokine ligand 6 flag
0
Mm Hs LGALS2 0.032 0.133 1 0.036 0.031 5 Cholangiocytes Endoderm Liver HL14 galectin 2 Yflag
0
Mm Hs TACSTD2 0.033 0.347 NA 0.092 NA 3 Cholangiocytes Endoderm Liver TROP2,GA733-1,EGP-1,M1S1 tumor associated calcium signal transducer 2 Yflag
0
Mm Hs MUC5B 0.002 0.213 NA 0.004 0.001 4 Cholangiocytes Endoderm Liver MG1 mucin 5B, oligomeric mucus/gel-forming Yflag
0
Mm Hs LGALS4 0.032 0.613 1 0.025 0.031 4 Cholangiocytes Endoderm Liver GAL4 galectin 4 flag
0
Mm Hs SSTR2 0.028 NA NA 0.012 NA 3 Cholangiocytes Endoderm Liver somatostatin receptor 2 flag
0
Mm Hs SLC4A2 0.007 NA NA NA NA 2 Cholangiocytes Endoderm Liver HKB3,BND3L,NBND3,EPB3L1 solute carrier family 4 member 2 flag
0
Mm Hs SCTR 0 NA NA NA NA 1 Cholangiocytes Endoderm Liver secretin receptor flag
0
Mm Hs KRT7 0.056 0.32 1 0.096 0.047 9 Cholangiocytes Endoderm Liver CK7,K2C7 keratin 7 flag
0
Mm Hs KCNN2 0.003 NA NA 0 0.004 1 Cholangiocytes Endoderm Liver KCa2.2,hSK2 potassium calcium-activated channel subfamily N member 2 flag
0
Mm Hs ITGB4 0.013 0.053 NA 0.013 0.014 6 Cholangiocytes Endoderm Liver CD104 integrin subunit beta 4 Yflag
0
Mm Hs GGT6 0.003 0.12 NA 0.005 0.002 1 Cholangiocytes Endoderm Liver FLJ90165 gamma-glutamyltransferase 6 flag
0
Mm Hs CFTR 0.003 0.12 NA 0.004 0.003 3 Cholangiocytes Endoderm Liver ABC35,TNR-CFTR,CFTR/MRP,CF,ABCC7 cystic fibrosis transmembrane conductance regulator Yflag
0
Mm Hs CCKBR 0 NA NA 0.001 0 2 Cholangiocytes Endoderm Liver cholecystokinin B receptor flag
0
Mm Hs AQP4 0.024 NA NA 0.006 0.029 9 Cholangiocytes Endoderm Liver MIWC aquaporin 4 flag
0
Mm Hs AQP1 0.037 0.04 NA 0.017 0.042 12 Cholangiocytes Endoderm Liver CHIP28,CO aquaporin 1 (Colton blood group) Yflag
0
Mm Hs PIGR 0.031 0.707 1 0.028 0.029 5 Cholangiocytes Endoderm Liver polymeric immunoglobulin receptor Yflag
0
Mm Hs GGT1 0.01 NA NA 0.002 0.012 3 Cholangiocytes Endoderm Liver D22S672,D22S732,CD224 gamma-glutamyltransferase 1 flag
0
Mm Hs JAG1 0.027 0.04 NA 0.023 0.028 3 Cholangiocytes Endoderm Liver AHD,AWS,HJ1,CD339,AGS,JAGL1 jagged 1 Yflag
0
Mm Hs GPBAR1 0.001 NA NA 0.004 NA 1 Cholangiocytes Endoderm Liver BG37,TGR5,M-BAR,GPCR19,GPR131,MGC40597 G protein-coupled bile acid receptor 1 flag
0
Mm Hs GGT7 0.007 NA NA 0 0.008 2 Cholangiocytes Endoderm Liver D20S101,dJ18C9.2,GGTL5,GGTL3 gamma-glutamyltransferase 7 flag
0
Mm Hs ONECUT2 0.012 NA 0.5 0.004 0.013 2 Cholangiocytes Endoderm Liver OC-2 one cut homeobox 2 flag
0
Mm Hs ALPL 0.009 NA NA 0.004 0.011 5 Cholangiocytes Endoderm Liver TNSALP,TNALP,TNAP,HOPS alkaline phosphatase, liver/bone/kidney Yflag
0
Mm Hs HNF1B 0.005 NA NA 0.01 0.005 3 Cholangiocytes Endoderm Liver LFB3,VHNF1,HNF1beta,MODY5,TCF2 HNF1 homeobox B Yflag
0
Mm MUC3 0.01 NA NA NA 0.013 4 Cholangiocytes Endoderm Liver mucin 3, intestinal flag
-1
Mm Hs DEFB1 0.009 0.08 NA 0.025 0.005 6 Cholangiocytes Endoderm Liver HBD-1,DEFB-1,DEFB101,HBD1,BD1,MGC51822 defensin beta 1 flag

Datasets with computationally identified Cholangiocytes

SRA SRS tissue cluster cell type p-value FDR View
SRA701877 SRS3279694 Pancreatic islets 6 Cholangiocytes 2.24E-5 3.95E-3 view data
SRA742961 SRS3565195 Prostate 0 Cholangiocytes 8.27E-5 7.14E-3 view data
SRA742961 SRS3565195 Prostate 1 Cholangiocytes 4.35E-10 5.30E-7 view data
SRA742961 SRS3565195 Prostate 2 Cholangiocytes 8.50E-8 2.69E-5 view data
SRA742961 SRS3565195 Prostate 3 Cholangiocytes 7.03E-11 2.00E-7 view data
SRA742961 SRS3565195 Prostate 8 Cholangiocytes 3.25E-4 1.95E-2 view data
SRA742961 SRS3565195 Prostate 14 Cholangiocytes 4.68E-6 8.34E-4 view data
SRA742961 SRS3565211 Prostate 10 Cholangiocytes 5.52E-6 1.79E-3 view data
SRA728025 SRS3454426 Colon 0 Cholangiocytes 5.30E-4 2.11E-2 view data
SRA728025 SRS3454426 Colon 1 Cholangiocytes 1.19E-6 1.44E-4 view data
SRA728025 SRS3454426 Colon 8 Cholangiocytes 2.91E-5 1.87E-3 view data
SRA728025 SRS3454426 Colon 12 Cholangiocytes 2.44E-5 1.66E-3 view data
SRA703206 SRS3296614 Colon (Ulcerative Colitis) 18 Cholangiocytes 4.57E-6 6.56E-4 view data
SRA639854 SRS2766803 Intestinal crypt epithelium 16 Cholangiocytes 3.87E-4 4.81E-2 view data
SRA728025 SRS3454428 Colon 0 Cholangiocytes 1.43E-10 5.40E-8 view data
SRA728025 SRS3454428 Colon 1 Cholangiocytes 2.05E-8 3.45E-6 view data
SRA728025 SRS3454428 Colon 3 Cholangiocytes 5.44E-7 6.10E-5 view data
SRA728025 SRS3454428 Colon 4 Cholangiocytes 2.08E-5 1.37E-3 view data
SRA728025 SRS3454428 Colon 7 Cholangiocytes 1.51E-9 3.81E-7 view data
SRA728025 SRS3454428 Colon 8 Cholangiocytes 1.20E-7 1.65E-5 view data
SRA728025 SRS3454428 Colon 12 Cholangiocytes 2.26E-4 9.89E-3 view data
SRA728025 SRS3454428 Colon 14 Cholangiocytes 3.39E-6 2.70E-4 view data
SRA728025 SRS3454430 Colon 0 Cholangiocytes 5.86E-8 1.17E-5 view data
SRA728025 SRS3454430 Colon 5 Cholangiocytes 1.44E-7 2.31E-5 view data
SRA728025 SRS3454430 Colon 6 Cholangiocytes 3.05E-4 1.50E-2 view data
SRA728025 SRS3454430 Colon 7 Cholangiocytes 7.99E-8 1.45E-5 view data
SRA728025 SRS3454430 Colon 10 Cholangiocytes 2.72E-4 1.43E-2 view data
SRA728025 SRS3454430 Colon 15 Cholangiocytes 1.22E-5 1.03E-3 view data
SRA728025 SRS3454430 Colon 17 Cholangiocytes 1.48E-5 1.18E-3 view data
SRA716608 SRS3391631 Liver 9 Cholangiocytes 3.60E-10 1.37E-7 view data
SRA728025 SRS3454422 Colon 2 Cholangiocytes 1.50E-6 2.10E-4 view data
SRA728025 SRS3454422 Colon 6 Cholangiocytes 3.58E-4 2.07E-2 view data
SRA628138 SRS2659230 Intestinal organoid epithelial cells 10 Cholangiocytes 6.99E-5 8.16E-3 view data
SRA691388 SRS3173555 Breast epithelium 3 Cholangiocytes 9.09E-5 5.85E-3 view data
SRA691388 SRS3173555 Breast epithelium 8 Cholangiocytes 1.35E-4 8.44E-3 view data
SRA782908 SRS3815606 Decidua 16 Cholangiocytes 1.27E-5 1.16E-3 view data
SRA742961 SRS3565204 Prostate 6 Cholangiocytes 1.41E-8 1.26E-5 view data
SRA742961 SRS3565204 Prostate 11 Cholangiocytes 4.51E-4 2.74E-2 view data
SRA728025 SRS3454423 Colon 0 Cholangiocytes 7.26E-7 1.29E-4 view data
SRA728025 SRS3454423 Colon 3 Cholangiocytes 3.08E-5 3.34E-3 view data
SRA728025 SRS3454423 Colon 5 Cholangiocytes 3.04E-7 6.32E-5 view data
SRA728025 SRS3454423 Colon 8 Cholangiocytes 1.18E-5 1.34E-3 view data
SRA639854 SRS2766801 Intestinal crypt epithelium 14 Cholangiocytes 1.86E-5 3.12E-3 view data
SRA728025 SRS3454427 Colon 0 Cholangiocytes 1.21E-9 3.53E-7 view data
SRA728025 SRS3454427 Colon 4 Cholangiocytes 2.51E-7 3.36E-5 view data
SRA728025 SRS3454427 Colon 5 Cholangiocytes 4.85E-7 6.10E-5 view data
SRA728025 SRS3454427 Colon 6 Cholangiocytes 5.55E-7 6.35E-5 view data
SRA728025 SRS3454427 Colon 8 Cholangiocytes 1.31E-5 9.30E-4 view data
SRA728025 SRS3454427 Colon 10 Cholangiocytes 7.95E-6 6.54E-4 view data
SRA728025 SRS3454427 Colon 15 Cholangiocytes 1.34E-6 1.38E-4 view data
SRA728025 SRS3454427 Colon 16 Cholangiocytes 2.16E-4 9.63E-3 view data
SRA742961 SRS3565203 Prostate 1 Cholangiocytes 1.40E-6 1.31E-4 view data
SRA742961 SRS3565203 Prostate 3 Cholangiocytes 4.26E-9 4.17E-6 view data
SRA742961 SRS3565203 Prostate 5 Cholangiocytes 4.61E-8 2.04E-5 view data
SRA742961 SRS3565203 Prostate 6 Cholangiocytes 3.47E-7 4.29E-5 view data
SRA742961 SRS3565203 Prostate 8 Cholangiocytes 7.29E-8 2.04E-5 view data
SRA742961 SRS3565203 Prostate 10 Cholangiocytes 9.30E-6 5.52E-4 view data
SRA742961 SRS3565202 Prostate 3 Cholangiocytes 3.93E-11 1.19E-7 view data
SRA742961 SRS3565202 Prostate 7 Cholangiocytes 1.60E-8 8.06E-6 view data
SRA728025 SRS3454425 Colon 1 Cholangiocytes 4.42E-7 5.74E-5 view data
SRA728025 SRS3454425 Colon 5 Cholangiocytes 6.76E-6 6.34E-4 view data
SRA728025 SRS3454425 Colon 6 Cholangiocytes 9.38E-7 1.03E-4 view data
SRA728025 SRS3454425 Colon 7 Cholangiocytes 7.70E-4 2.99E-2 view data
SRA728025 SRS3454425 Colon 11 Cholangiocytes 3.88E-6 3.95E-4 view data
SRA728025 SRS3454425 Colon 15 Cholangiocytes 2.57E-5 1.59E-3 view data
SRA742961 SRS3565199 Prostate 2 Cholangiocytes 1.88E-4 2.44E-2 view data
SRA742961 SRS3565207 Prostate 11 Cholangiocytes 1.47E-8 8.92E-6 view data
SRA742961 SRS3565207 Prostate 13 Cholangiocytes 4.73E-4 3.67E-2 view data
SRA742961 SRS3565197 Prostate 4 Cholangiocytes 3.03E-12 8.63E-9 view data
SRA742961 SRS3565197 Prostate 6 Cholangiocytes 1.40E-7 4.00E-5 view data
SRA742961 SRS3565197 Prostate 13 Cholangiocytes 2.42E-6 4.91E-4 view data
SRA760933 SRS3693061 Hepatocyte-derived liver progenitor-like cells 7 Cholangiocytes 1.82E-4 1.87E-2 view data
SRA760933 SRS3693061 Hepatocyte-derived liver progenitor-like cells 11 Cholangiocytes 6.90E-5 7.67E-3 view data
SRA728025 SRS3454424 Colon 0 Cholangiocytes 1.30E-10 4.06E-8 view data
SRA728025 SRS3454424 Colon 1 Cholangiocytes 3.29E-5 1.87E-3 view data
SRA728025 SRS3454424 Colon 3 Cholangiocytes 1.13E-5 7.41E-4 view data
SRA728025 SRS3454424 Colon 5 Cholangiocytes 8.59E-7 7.38E-5 view data
SRA728025 SRS3454424 Colon 10 Cholangiocytes 2.19E-7 2.38E-5 view data