Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 7980 associations (170 cell types, 4578 gene symbols, 27 tissues); Last updated: 15/04/2019 11:41:03 CET

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Gene expression markers for Chondrocytes

Vote(s) Species Official gene symbol UI Sensitivity Marker count Cell type Germ layer Organ Aliases Product description Disease Action
0
Mm Hs IGF1 0.043 0.001 5 Chondrocytes Mesoderm Connective tissue IGF1A,IGFI,IGF-I,IGF insulin like growth factor 1 Yflag
0
Mm Hs CYTL1 0.01 0.25 3 Chondrocytes Mesoderm Connective tissue C17,C4orf4 cytokine like 1 flag
0
Mm Hs COL6A1 0.061 0.037 2 Chondrocytes Mesoderm Connective tissue collagen type VI alpha 1 chain Yflag
0
Mm Hs EMP1 0.073 0.029 2 Chondrocytes Mesoderm Connective tissue TMP,CL-20 epithelial membrane protein 1 flag
0
Hs CHI3L1 0.002 0 1 Chondrocytes Mesoderm Connective tissue GP39,YKL40 chitinase 3 like 1 Yflag
0
Hs CHI3L2 0.002 0 1 Chondrocytes Mesoderm Connective tissue YKL-39,YKL39 chitinase 3 like 2 flag
0
Mm Hs SDC3 0.007 0.009 1 Chondrocytes Mesoderm Connective tissue N-syndecan,SYND3 syndecan 3 Yflag
0
Mm Hs MIA 0.004 0.001 1 Chondrocytes Mesoderm Connective tissue CD-RAP MIA SH3 domain containing flag
0
Mm Hs IGF2 0.013 0 7 Chondrocytes Mesoderm Connective tissue FLJ44734,IGF-II,C11orf43 insulin like growth factor 2 Yflag
0
Mm Hs LCN2 0.04 0.006 8 Chondrocytes Mesoderm Connective tissue NGAL,24p3 lipocalin 2 flag
0
Mm Hs COL10A1 0 0 1 Chondrocytes Mesoderm Connective tissue collagen type X alpha 1 chain Yflag
0
Mm Hs COL9A1 0.006 0.302 2 Chondrocytes Mesoderm Connective tissue collagen type IX alpha 1 chain Yflag
0
Mm Hs MATN1 0.001 0 1 Chondrocytes Mesoderm Connective tissue CRTM,CMP matrilin 1 flag
0
Mm Hs ITGA3 0.011 0 4 Chondrocytes Mesoderm Connective tissue CD49c,VLA3a,VCA-2,GAP-B3,MSK18 integrin subunit alpha 3 Yflag
0
Mm Hs MMP9 0.014 0 6 Chondrocytes Mesoderm Connective tissue CLG4B matrix metallopeptidase 9 Yflag
0
Mm Hs VEGFA 0.02 0 8 Chondrocytes Mesoderm Connective tissue VEGF-A,VPF,VEGF vascular endothelial growth factor A Yflag
0
Mm Hs MMP14 0.054 0.004 4 Chondrocytes Mesoderm Connective tissue MT1-MMP matrix metallopeptidase 14 Yflag
0
Mm Hs MMP13 0 0 3 Chondrocytes Mesoderm Connective tissue CLG3 matrix metallopeptidase 13 Yflag
0
Mm Hs FMOD 0.008 0.259 3 Chondrocytes Mesoderm Connective tissue SLRR2E fibromodulin flag
0
Mm Hs CHODL 0.003 0 3 Chondrocytes Mesoderm Connective tissue FLJ12627,PRED12,MT75,C21orf68 chondrolectin flag
0
Mm Hs S100A8 0.057 0.023 12 Chondrocytes Mesoderm Connective tissue P8,CGLA,CAGA S100 calcium binding protein A8 flag
0
Mm Hs DLK1 0.058 0.022 4 Chondrocytes Mesoderm Connective tissue FA1,pG2,Pref-1,ZOG,Delta1 delta like non-canonical Notch ligand 1 flag
0
Mm Hs COL9A3 0.02 0.101 1 Chondrocytes Mesoderm Connective tissue EDM3,FLJ90759,DJ885L7.4.1 collagen type IX alpha 3 chain Yflag
0
Mm Hs CHAD 0.002 0.06 1 Chondrocytes Mesoderm Connective tissue SLRR4A chondroadherin flag
0
Mm Hs S100A9 0.055 0.021 10 Chondrocytes Mesoderm Connective tissue MIF,NIF,LIAG,MRP14,MAC387,CGLB,CAGB S100 calcium binding protein A9 flag
0
Mm Hs COL11A1 0.008 0.356 2 Chondrocytes Mesoderm Connective tissue STL2,CO11A1,COLL6 collagen type XI alpha 1 chain Yflag
0
Mm Hs HAPLN1 0.009 0.433 1 Chondrocytes Mesoderm Connective tissue CRTL1 hyaluronan and proteoglycan link protein 1 flag
0
Mm Hs TGFBR1 0.029 0 3 Chondrocytes Mesoderm Connective tissue ALK-5,ALK5,TBRI,TBR-i,MSSE,ESS1 transforming growth factor beta receptor 1 Yflag
0
Mm STFA1 0.006 0.103 2 Chondrocytes Mesoderm Connective tissue stefin A1 flag
0
Mm RETNLG 0.011 0.062 2 Chondrocytes Mesoderm Connective tissue resistin like gamma flag
0
Mm STFA3 0.006 0.067 1 Chondrocytes Mesoderm Connective tissue stefin A3 flag
0
Mm Hs SCRG1 0.04 0.009 3 Chondrocytes Mesoderm Connective tissue SCRG-1 stimulator of chondrogenesis 1 flag
0
Mm Hs GADD45B 0.1 0.022 2 Chondrocytes Mesoderm Connective tissue GADD45BETA,DKFZP566B133,MYD118 growth arrest and DNA damage inducible beta flag
0
Mm Hs CAPN6 0.003 0.019 1 Chondrocytes Mesoderm Connective tissue CAPNX,CalpM,CANPX calpain 6 flag
0
Mm Hs LUM 0.053 0.038 4 Chondrocytes Mesoderm Connective tissue SLRR2D,LDC lumican flag
0
AC159092.1 0.034 0 1 Chondrocytes Mesoderm Connective tissue flag
0
Mm Hs COL9A2 0.008 0.287 1 Chondrocytes Mesoderm Connective tissue EDM2 collagen type IX alpha 2 chain Yflag
0
Mm Hs BMP7 0.01 0 3 Chondrocytes Mesoderm Connective tissue OP-1 bone morphogenetic protein 7 flag
0
Mm Hs BMP2 0.007 0 2 Chondrocytes Mesoderm Connective tissue BMP2A bone morphogenetic protein 2 Yflag
0
Mm Hs ACVR1 0.001 0 1 Chondrocytes Mesoderm Connective tissue SKR1,ALK2,ACVR1A,ACVRLK2 activin A receptor type 1 Yflag
0
Mm Hs SOX6 0.018 0.004 2 Chondrocytes Mesoderm Connective tissue SRY-box 6 flag
0
Mm Hs SOX5 0.011 0 2 Chondrocytes Mesoderm Connective tissue L-SOX5,MGC35153 SRY-box 5 Yflag
0
Mm Hs RUNX3 0.016 0 2 Chondrocytes Mesoderm Connective tissue AML2,PEBP2A3,CBFA3 runt related transcription factor 3 flag
0
Mm Hs MATN3 0.001 0 1 Chondrocytes Mesoderm Connective tissue EDM5,HOA matrilin 3 Yflag
0
Mm Hs COMP 0.005 0.477 1 Chondrocytes Mesoderm Connective tissue THBS5,PSACH,EDM1,EPD1 cartilage oligomeric matrix protein Yflag
0
Mm Hs BMPR1A 0.02 0 1 Chondrocytes Mesoderm Connective tissue ALK3,CD292,ACVRLK3 bone morphogenetic protein receptor type 1A Yflag
0
Mm Hs COL2A1 0.007 0.405 2 Chondrocytes Mesoderm Connective tissue STL1,SEDC,AOM collagen type II alpha 1 chain Yflag
0
Mm Hs COL11A2 0.004 0.467 1 Chondrocytes Mesoderm Connective tissue HKE5,DFNA13,DFNB53 collagen type XI alpha 2 chain Yflag
0
Mm Hs ACAN 0.001 0.92 1 Chondrocytes Mesoderm Connective tissue CSPGCP,CSPG1,AGC1 aggrecan Yflag
0
Mm Hs RUNX2 0.006 0 3 Chondrocytes Mesoderm Connective tissue AML3,PEBP2A1,PEBP2aA1,CCD,CBFA1,CCD1 runt related transcription factor 2 Yflag
0
Mm Hs CREB3L2 0.025 0.015 1 Chondrocytes Mesoderm Connective tissue BBF2H7,TCAG_1951439 cAMP responsive element binding protein 3 like 2 flag
0
Mm Hs BCL2 0.04 0 5 Chondrocytes Mesoderm Connective tissue Bcl-2,PPP1R50 BCL2, apoptosis regulator flag
0
Mm Hs CRTAC1 0.006 0 1 Chondrocytes Mesoderm Connective tissue FLJ10320,CEP-68,ASPIC1 cartilage acidic protein 1 flag
0
Mm Hs TNC 0.033 0 3 Chondrocytes Mesoderm Connective tissue MGC167029,HXB,DFNA56 tenascin C Yflag
0
Mm Hs GLI3 0.003 0 2 Chondrocytes Mesoderm Connective tissue PAP-A,PAPA1,PAPB,ACLS,PPDIV,GCPS,PHS GLI family zinc finger 3 Yflag
0
Mm Hs STAT1 0.034 0 1 Chondrocytes Mesoderm Connective tissue STAT91,ISGF-3 signal transducer and activator of transcription 1 Yflag
0
Mm Hs SMO 0.005 0.014 2 Chondrocytes Mesoderm Connective tissue FZD11,SMOH smoothened, frizzled class receptor Yflag
0
Mm Hs PTHLH 0.001 0 2 Chondrocytes Mesoderm Connective tissue PTHRP parathyroid hormone like hormone Yflag
0
Mm Hs PTH1R 0.015 0.004 6 Chondrocytes Mesoderm Connective tissue PTHR1 parathyroid hormone 1 receptor Yflag
0
Mm Hs PTCH1 0.012 0 5 Chondrocytes Mesoderm Connective tissue BCNS,NBCCS,PTCH patched 1 Yflag
0
Mm Hs PBX3 0.006 0 2 Chondrocytes Mesoderm Connective tissue PBX homeobox 3 flag
0
Mm Hs PBX2 0.008 0 2 Chondrocytes Mesoderm Connective tissue HOX12,PBX2MHC PBX homeobox 2 flag
0
Mm Hs IHH 0.002 0 1 Chondrocytes Mesoderm Connective tissue HHG2,BDA1 indian hedgehog Yflag
0
Mm Hs PRG4 0.003 0.184 4 Chondrocytes Mesoderm Connective tissue JCAP,SZP,HAPO,bG174L6.2,FLJ32635,CACP proteoglycan 4 Yflag
0
Mm Hs GLI2 0 0 1 Chondrocytes Mesoderm Connective tissue THP2,HPE9,THP1 GLI family zinc finger 2 Yflag
0
Mm Hs FGFR3 0.021 0.021 2 Chondrocytes Mesoderm Connective tissue CEK2,JTK4,CD333,ACH fibroblast growth factor receptor 3 Yflag
0
Mm Hs FGFR2 0.033 0.004 4 Chondrocytes Mesoderm Connective tissue CEK3,TK14,TK25,ECT1,K-SAM,CD332,KGFR,BEK,JWS fibroblast growth factor receptor 2 Yflag
0
Mm Hs FGF9 0.006 0 1 Chondrocytes Mesoderm Connective tissue fibroblast growth factor 9 Yflag
0
Mm Hs FGF18 0.001 0 1 Chondrocytes Mesoderm Connective tissue FGF-18,ZFGF5 fibroblast growth factor 18 flag
0
Mm Hs CTNNB1 0.052 0.006 8 Chondrocytes Mesoderm Connective tissue beta-catenin,armadillo,CTNNB catenin beta 1 Yflag
0
Mm Hs CNMD 0.006 0.354 1 Chondrocytes Mesoderm Connective tissue CHM-I,CHM1,BRICD3,MYETS1,LECT1 chondromodulin flag

Datasets with computationally identified Chondrocytes

SRA SRS tissue cluster cell type p-value FDR View
SRA638923 SRS2797046 Bone marrow 7 Chondrocytes 7.38E-14 1.76E-10 view data
SRA638923 SRS2797089 Calvaria 0 Chondrocytes 5.26E-11 8.94E-9 view data
SRA638923 SRS2797089 Calvaria 1 Chondrocytes 1.60E-11 4.08E-9 view data
SRA638923 SRS2797089 Calvaria 2 Chondrocytes 4.09E-14 2.09E-11 view data
SRA638923 SRS2797090 Calvaria 0 Chondrocytes 2.92E-13 1.74E-10 view data
SRA638923 SRS2797090 Calvaria 1 Chondrocytes 9.85E-12 2.34E-9 view data
SRA638923 SRS2797090 Calvaria 2 Chondrocytes 4.17E-12 1.65E-9 view data
SRA638923 SRS2797090 Calvaria 3 Chondrocytes 1.60E-13 1.74E-10 view data
SRA638923 SRS2797090 Calvaria 4 Chondrocytes 7.45E-12 2.22E-9 view data
SRA638923 SRS2797090 Calvaria 5 Chondrocytes 1.24E-11 2.45E-9 view data
SRA638923 SRS2797093 Muscle 1 Chondrocytes 4.14E-17 2.82E-14 view data
SRA638923 SRS2797094 Rib 0 Chondrocytes 1.56E-11 3.98E-9 view data
SRA638923 SRS2797094 Rib 1 Chondrocytes 1.55E-13 7.91E-11 view data
SRA638923 SRS2797094 Rib 2 Chondrocytes 1.19E-12 4.04E-10 view data
SRA638923 SRS2797095 Rib 0 Chondrocytes 7.97E-17 1.49E-13 view data
SRA638923 SRS2797095 Rib 1 Chondrocytes 1.80E-5 4.01E-3 view data
SRA638923 SRS2797095 Rib 2 Chondrocytes 7.92E-15 4.94E-12 view data
SRA638923 SRS2797095 Rib 3 Chondrocytes 8.37E-16 7.83E-13 view data
SRA638923 SRS2797095 Rib 6 Chondrocytes 1.59E-5 4.01E-3 view data
SRA638923 SRS2797095 Rib 8 Chondrocytes 5.59E-5 1.05E-2 view data
SRA638923 SRS2797097 Rib 1 Chondrocytes 4.17E-12 2.13E-9 view data
SRA665153 SRS3030316 Airway submucosal glandular epithelial cells 3 Chondrocytes 4.98E-10 1.16E-7 view data
SRA653146 SRS3044263 Trachea 1 Chondrocytes 1.16E-13 9.33E-11 view data
SRA653146 SRS3044263 Trachea 1 Chondrocytes 1.56E-13 1.21E-10 view data
SRA653146 SRS3044263 Trachea 1 Chondrocytes 1.56E-13 1.23E-10 view data
SRA653146 SRS3044263 Trachea 1 Chondrocytes 2.10E-13 1.66E-10 view data
SRA653146 SRS3044263 Trachea 2 Chondrocytes 4.34E-13 2.80E-10 view data
SRA653146 SRS3044263 Trachea 2 Chondrocytes 6.09E-13 3.77E-10 view data
SRA653146 SRS3044263 Trachea 2 Chondrocytes 6.09E-13 3.84E-10 view data
SRA653146 SRS3044263 Trachea 2 Chondrocytes 8.48E-13 5.35E-10 view data
SRA653146 SRS3044263 Trachea 4 Chondrocytes 1.19E-5 2.02E-3 view data
SRA653146 SRS3044263 Trachea 4 Chondrocytes 1.37E-5 2.13E-3 view data
SRA653146 SRS3044263 Trachea 5 Chondrocytes 1.17E-10 4.73E-8 view data
SRA653146 SRS3044263 Trachea 6 Chondrocytes 2.65E-14 4.28E-11 view data
SRA653146 SRS3044263 Trachea 11 Chondrocytes 8.94E-12 4.81E-9 view data
SRA653146 SRS3044263 Trachea 14 Chondrocytes 5.25E-4 4.98E-2 view data
SRA653146 SRS3044262 Trachea 0 Chondrocytes 4.26E-14 2.90E-11 view data
SRA653146 SRS3044262 Trachea 5 Chondrocytes 7.72E-8 1.53E-5 view data
SRA653146 SRS3044262 Trachea 10 Chondrocytes 3.26E-9 8.17E-7 view data
SRA653146 SRS3044262 Trachea 12 Chondrocytes 3.44E-15 3.27E-12 view data
SRA653146 SRS2874285 Trachea 1 Chondrocytes 1.62E-12 2.86E-10 view data
SRA709816 SRS3331831 ES-derived kidney organoid 5 Chondrocytes 3.85E-5 2.45E-2 view data
SRA807566 SRS4031560 Lung 13 Chondrocytes 5.61E-5 1.30E-2 view data