Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 7014 associations (154 cell types, 4254 gene symbols, 28 tissues); Last updated: 19/02/2019 18:01:34 CET

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Gene expression markers for Chondrocytes

Species Official gene symbol UI Sensitivity Marker count Cell type Germ layer Organ Aliases Product description Disease Action
Mm Hs GADD45B 0.092 0.027 2 Chondrocytes Mesoderm Connective tissue GADD45BETA,DKFZP566B133,MYD118 growth arrest and DNA damage inducible beta flag
Mm Hs DLK1 0.061 0.027 3 Chondrocytes Mesoderm Connective tissue FA1,pG2,Pref-1,ZOG,Delta1 delta like non-canonical Notch ligand 1 flag
Mm Hs EMP1 0.059 0.049 2 Chondrocytes Mesoderm Connective tissue TMP,CL-20 epithelial membrane protein 1 flag
Mm Hs COL6A1 0.056 0.055 1 Chondrocytes Mesoderm Connective tissue collagen type VI alpha 1 chain Yflag
Mm Hs MMP14 0.052 0.011 3 Chondrocytes Mesoderm Connective tissue MT1-MMP matrix metallopeptidase 14 Yflag
Mm Hs LUM 0.05 0.055 4 Chondrocytes Mesoderm Connective tissue SLRR2D,LDC lumican flag
Mm Hs S100A8 0.047 0.045 11 Chondrocytes Mesoderm Connective tissue P8,CGLA,CAGA S100 calcium binding protein A8 flag
Mm Hs S100A9 0.047 0.043 9 Chondrocytes Mesoderm Connective tissue MIF,NIF,LIAG,MRP14,MAC387,CGLB,CAGB S100 calcium binding protein A9 flag
Mm Hs CTNNB1 0.046 0.016 5 Chondrocytes Mesoderm Connective tissue beta-catenin,armadillo,CTNNB catenin beta 1 Yflag
Mm Hs SCRG1 0.04 0.011 5 Chondrocytes Mesoderm Connective tissue SCRG-1 stimulator of chondrogenesis 1 flag
Mm Hs IGF1 0.04 0.001 6 Chondrocytes Mesoderm Connective tissue IGF1A,IGFI,IGF-I,IGF insulin like growth factor 1 Yflag
Mm Hs BCL2 0.037 0 7 Chondrocytes Mesoderm Connective tissue Bcl-2,PPP1R50 BCL2, apoptosis regulator flag
Mm Hs TNC 0.036 0.002 5 Chondrocytes Mesoderm Connective tissue MGC167029,HXB,DFNA56 tenascin C Yflag
AC159092.1 0.036 0 1 Chondrocytes Mesoderm Connective tissue flag
Mm Hs LCN2 0.035 0.009 7 Chondrocytes Mesoderm Connective tissue NGAL,24p3 lipocalin 2 flag
Mm Hs FGFR2 0.034 0.006 4 Chondrocytes Mesoderm Connective tissue CEK3,TK14,TK25,ECT1,K-SAM,CD332,KGFR,BEK,JWS fibroblast growth factor receptor 2 Yflag
Mm Hs STAT1 0.031 0 1 Chondrocytes Mesoderm Connective tissue STAT91,ISGF-3 signal transducer and activator of transcription 1 Yflag
Mm Hs TGFBR1 0.03 0 4 Chondrocytes Mesoderm Connective tissue ALK-5,ALK5,TBRI,TBR-i,MSSE,ESS1 transforming growth factor beta receptor 1 Yflag
Mm Hs CREB3L2 0.024 0.017 1 Chondrocytes Mesoderm Connective tissue BBF2H7,TCAG_1951439 cAMP responsive element binding protein 3 like 2 flag
Mm Hs COL9A3 0.02 0.114 1 Chondrocytes Mesoderm Connective tissue EDM3,FLJ90759,DJ885L7.4.1 collagen type IX alpha 3 chain Yflag
Mm Hs BMPR1A 0.019 0.004 1 Chondrocytes Mesoderm Connective tissue ALK3,CD292,ACVRLK3 bone morphogenetic protein receptor type 1A Yflag
Mm Hs FGFR3 0.019 0.025 2 Chondrocytes Mesoderm Connective tissue CEK2,JTK4,CD333,ACH fibroblast growth factor receptor 3 Yflag
Mm Hs SOX6 0.018 0.005 2 Chondrocytes Mesoderm Connective tissue SRY-box 6 flag
Mm Hs VEGFA 0.017 0 7 Chondrocytes Mesoderm Connective tissue VEGF-A,VPF,VEGF vascular endothelial growth factor A Yflag
Mm Hs PTH1R 0.015 0.004 3 Chondrocytes Mesoderm Connective tissue PTHR1 parathyroid hormone 1 receptor Yflag
Mm Hs RUNX3 0.015 0 1 Chondrocytes Mesoderm Connective tissue AML2,PEBP2A3,CBFA3 runt related transcription factor 3 flag
Mm Hs PTCH1 0.013 0 5 Chondrocytes Mesoderm Connective tissue BCNS,NBCCS,PTCH patched 1 Yflag
Mm Hs MMP9 0.013 0 5 Chondrocytes Mesoderm Connective tissue CLG4B matrix metallopeptidase 9 Yflag
Mm Hs SOX5 0.012 0 2 Chondrocytes Mesoderm Connective tissue L-SOX5,MGC35153 SRY-box 5 Yflag
Mm Hs CYTL1 0.012 0.275 3 Chondrocytes Mesoderm Connective tissue C17,C4orf4 cytokine like 1 flag
Mm Hs IGF2 0.011 0 5 Chondrocytes Mesoderm Connective tissue FLJ44734,IGF-II,C11orf43 insulin like growth factor 2 Yflag
Mm RETNLG 0.011 0.096 2 Chondrocytes Mesoderm Connective tissue resistin like gamma flag
Mm Hs HAPLN1 0.011 0.431 1 Chondrocytes Mesoderm Connective tissue CRTL1 hyaluronan and proteoglycan link protein 1 flag
Mm Hs BMP7 0.01 0 3 Chondrocytes Mesoderm Connective tissue OP-1 bone morphogenetic protein 7 flag
Mm Hs SDC3 0.009 0.009 1 Chondrocytes Mesoderm Connective tissue N-syndecan,SYND3 syndecan 3 Yflag
Mm Hs CNMD 0.009 0.358 2 Chondrocytes Mesoderm Connective tissue CHM-I,CHM1,BRICD3,MYETS1,LECT1 chondromodulin flag
Mm Hs PBX2 0.009 0 1 Chondrocytes Mesoderm Connective tissue HOX12,PBX2MHC PBX homeobox 2 flag
Mm Hs ITGA3 0.009 0 5 Chondrocytes Mesoderm Connective tissue CD49c,VLA3a,VCA-2,GAP-B3,MSK18 integrin subunit alpha 3 Yflag
Mm Hs COL9A2 0.008 0.322 1 Chondrocytes Mesoderm Connective tissue EDM2 collagen type IX alpha 2 chain Yflag
Mm Hs COL11A1 0.008 0.409 1 Chondrocytes Mesoderm Connective tissue STL2,CO11A1,COLL6 collagen type XI alpha 1 chain Yflag
Mm Hs PBX3 0.008 0.011 2 Chondrocytes Mesoderm Connective tissue PBX homeobox 3 flag
Mm Hs COL2A1 0.008 0.455 1 Chondrocytes Mesoderm Connective tissue STL1,SEDC,AOM collagen type II alpha 1 chain Yflag
Mm Hs FMOD 0.007 0.38 3 Chondrocytes Mesoderm Connective tissue SLRR2E fibromodulin flag
Mm Hs COL9A1 0.007 0.324 2 Chondrocytes Mesoderm Connective tissue collagen type IX alpha 1 chain Yflag
Mm Hs FGF9 0.007 0 2 Chondrocytes Mesoderm Connective tissue fibroblast growth factor 9 Yflag
Mm Hs CRTAC1 0.006 0 1 Chondrocytes Mesoderm Connective tissue FLJ10320,CEP-68,ASPIC1 cartilage acidic protein 1 flag
Mm Hs COMP 0.006 0.581 1 Chondrocytes Mesoderm Connective tissue THBS5,PSACH,EDM1,EPD1 cartilage oligomeric matrix protein Yflag
Mm Hs RUNX2 0.006 0 3 Chondrocytes Mesoderm Connective tissue AML3,PEBP2A1,PEBP2aA1,CCD,CBFA1,CCD1 runt related transcription factor 2 Yflag
Mm Hs BMP2 0.006 0 1 Chondrocytes Mesoderm Connective tissue BMP2A bone morphogenetic protein 2 Yflag
Mm STFA3 0.005 0.143 2 Chondrocytes Mesoderm Connective tissue stefin A3 flag
Mm Hs MIA 0.004 0 1 Chondrocytes Mesoderm Connective tissue CD-RAP MIA SH3 domain containing flag
Mm STFA1 0.004 0.221 3 Chondrocytes Mesoderm Connective tissue stefin A1 flag
Mm Hs SMO 0.004 0.038 2 Chondrocytes Mesoderm Connective tissue FZD11,SMOH smoothened, frizzled class receptor Yflag
Mm Hs GLI3 0.004 0 2 Chondrocytes Mesoderm Connective tissue PAP-A,PAPA1,PAPB,ACLS,PPDIV,GCPS,PHS GLI family zinc finger 3 Yflag
Mm Hs COL11A2 0.004 0.452 1 Chondrocytes Mesoderm Connective tissue HKE5,DFNA13,DFNB53 collagen type XI alpha 2 chain Yflag
Mm Hs CAPN6 0.004 0.043 1 Chondrocytes Mesoderm Connective tissue CAPNX,CalpM,CANPX calpain 6 flag
Mm Hs PRG4 0.003 0.3 4 Chondrocytes Mesoderm Connective tissue JCAP,SZP,HAPO,bG174L6.2,FLJ32635,CACP proteoglycan 4 Yflag
Mm Hs ACAN 0.002 0.923 2 Chondrocytes Mesoderm Connective tissue CSPGCP,CSPG1,AGC1 aggrecan Yflag
Hs CHI3L2 0.002 0 1 Chondrocytes Mesoderm Connective tissue YKL-39,YKL39 chitinase 3 like 2 flag
Mm Hs CHAD 0.002 0.029 1 Chondrocytes Mesoderm Connective tissue SLRR4A chondroadherin flag
Hs CHI3L1 0.001 0 1 Chondrocytes Mesoderm Connective tissue GP39,YKL40 chitinase 3 like 1 Yflag
Mm Hs MATN3 0.001 0 1 Chondrocytes Mesoderm Connective tissue EDM5,HOA matrilin 3 Yflag
Mm Hs MATN1 0.001 0 1 Chondrocytes Mesoderm Connective tissue CRTM,CMP matrilin 1 flag
Mm Hs PTHLH 0.001 0 2 Chondrocytes Mesoderm Connective tissue PTHRP parathyroid hormone like hormone Yflag
Mm Hs IHH 0.001 0 1 Chondrocytes Mesoderm Connective tissue HHG2,BDA1 indian hedgehog Yflag
Mm Hs GLI2 0.001 0 1 Chondrocytes Mesoderm Connective tissue THP2,HPE9,THP1 GLI family zinc finger 2 Yflag
Mm Hs FGF18 0.001 0 1 Chondrocytes Mesoderm Connective tissue FGF-18,ZFGF5 fibroblast growth factor 18 flag
Mm Hs ACVR1 0.001 0 1 Chondrocytes Mesoderm Connective tissue SKR1,ALK2,ACVR1A,ACVRLK2 activin A receptor type 1 Yflag
Mm Hs COL10A1 0 0 1 Chondrocytes Mesoderm Connective tissue collagen type X alpha 1 chain Yflag
Mm Hs MMP13 0 0 2 Chondrocytes Mesoderm Connective tissue CLG3 matrix metallopeptidase 13 Yflag

Datasets with computationally identified Chondrocytes

SRA SRS tissue cluster cell type p-value FDR View
SRA638923 SRS2797046 Bone marrow 6 Chondrocytes 1.15E-17 2.48E-14 view data
SRA638923 SRS2797089 Calvaria 0 Chondrocytes 4.05E-17 1.87E-14 view data
SRA638923 SRS2797089 Calvaria 1 Chondrocytes 9.47E-17 2.19E-14 view data
SRA638923 SRS2797089 Calvaria 2 Chondrocytes 3.10E-14 4.77E-12 view data
SRA638923 SRS2797090 Calvaria 0 Chondrocytes 1.45E-18 1.56E-15 view data
SRA638923 SRS2797090 Calvaria 1 Chondrocytes 1.74E-13 3.76E-11 view data
SRA638923 SRS2797090 Calvaria 2 Chondrocytes 6.93E-18 2.49E-15 view data
SRA638923 SRS2797090 Calvaria 3 Chondrocytes 9.23E-18 2.49E-15 view data
SRA638923 SRS2797090 Calvaria 4 Chondrocytes 3.33E-18 1.80E-15 view data
SRA638923 SRS2797090 Calvaria 5 Chondrocytes 7.58E-13 1.36E-10 view data
SRA638923 SRS2797092 Muscle 0 Chondrocytes 1.44E-5 5.45E-3 view data
SRA638923 SRS2797092 Muscle 11 Chondrocytes 1.71E-4 3.96E-2 view data
SRA638923 SRS2797093 Muscle 0 Chondrocytes 4.59E-28 3.53E-25 view data
SRA638923 SRS2797094 Rib 0 Chondrocytes 1.31E-21 4.05E-19 view data
SRA638923 SRS2797094 Rib 1 Chondrocytes 3.80E-22 2.34E-19 view data
SRA638923 SRS2797094 Rib 2 Chondrocytes 9.22E-22 3.79E-19 view data
SRA638923 SRS2797094 Rib 3 Chondrocytes 1.53E-16 3.76E-14 view data
SRA638923 SRS2797094 Rib 5 Chondrocytes 2.26E-8 3.98E-6 view data
SRA638923 SRS2797095 Rib 0 Chondrocytes 2.40E-25 4.00E-22 view data
SRA638923 SRS2797095 Rib 1 Chondrocytes 2.93E-12 9.01E-10 view data
SRA638923 SRS2797095 Rib 2 Chondrocytes 2.90E-20 1.34E-17 view data
SRA638923 SRS2797095 Rib 3 Chondrocytes 4.81E-22 2.96E-19 view data
SRA638923 SRS2797095 Rib 5 Chondrocytes 3.08E-5 4.38E-3 view data
SRA638923 SRS2797095 Rib 6 Chondrocytes 4.24E-8 9.79E-6 view data
SRA638923 SRS2797095 Rib 8 Chondrocytes 2.67E-6 4.48E-4 view data
SRA638923 SRS2797095 Rib 9 Chondrocytes 4.51E-20 1.67E-17 view data
SRA638923 SRS2797097 Rib 1 Chondrocytes 4.81E-16 2.22E-13 view data
SRA665153 SRS3030316 Airway submucosal glandular epithelial cells 3 Chondrocytes 6.36E-12 1.20E-9 view data
SRA566478 notused Lung 7 Chondrocytes 2.15E-22 1.75E-20 view data
SRA782908 SRS3815597 Placenta 9 Chondrocytes 2.34E-5 1.18E-2 view data
SRA653146 SRS3044263 Trachea 1 Chondrocytes 3.79E-15 2.05E-12 view data
SRA653146 SRS3044263 Trachea 2 Chondrocytes 2.36E-17 2.55E-14 view data
SRA653146 SRS3044263 Trachea 3 Chondrocytes 5.24E-9 1.16E-6 view data
SRA653146 SRS3044263 Trachea 4 Chondrocytes 1.17E-12 4.19E-10 view data
SRA653146 SRS3044263 Trachea 5 Chondrocytes 7.98E-8 1.36E-5 view data
SRA653146 SRS3044263 Trachea 6 Chondrocytes 2.04E-18 4.28E-15 view data
SRA653146 SRS3044263 Trachea 13 Chondrocytes 1.32E-8 2.68E-6 view data
SRA653146 SRS3044263 Trachea 17 Chondrocytes 2.40E-8 4.57E-6 view data
SRA653146 SRS3044262 Trachea 0 Chondrocytes 1.73E-19 1.79E-16 view data
SRA653146 SRS3044262 Trachea 1 Chondrocytes 8.12E-6 7.85E-4 view data
SRA653146 SRS3044262 Trachea 3 Chondrocytes 6.73E-16 2.80E-13 view data
SRA653146 SRS3044262 Trachea 6 Chondrocytes 2.31E-10 4.37E-8 view data
SRA653146 SRS3044262 Trachea 20 Chondrocytes 1.70E-8 2.43E-6 view data
SRA653146 SRS2874285 Trachea 2 Chondrocytes 7.24E-17 1.06E-14 view data