Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8371 associations (156 cell types, 4875 gene symbols, 28 tissues); Last updated: 12/12/2018 11:58:19 CET

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Description: Oval cells are adult liver stem cells derived from activated hepatic progenitor cells that reside in the small terminal bile ducts.

Gene expression markers for Oval cells

Species Official gene symbol UI Sensitivity Marker count Cell type Germ layer Organ Aliases Product description Disease Action
Mm Hs KRT18 0.113 0.071 1 Oval cells Endoderm Liver keratin 18 Yflag
Mm Hs KRT8 0.106 0 3 Oval cells Endoderm Liver K8,CK8,CYK8,K2C8,KO keratin 8 Yflag
Mm Hs GJA1 0.091 0.015 11 Oval cells Endoderm Liver CX43,ODOD,SDTY3,ODDD,GJAL gap junction protein alpha 1 Yflag
Mm Hs THY1 0.085 0.003 11 Oval cells Endoderm Liver CD90 Thy-1 cell surface antigen flag
Mm Hs KRT19 0.073 0.085 5 Oval cells Endoderm Liver K19,CK19,K1CS,MGC15366 keratin 19 flag
Mm Hs STAT3 0.071 0.036 4 Oval cells Endoderm Liver APRF signal transducer and activator of transcription 3 Yflag
Mm Hs DLK1 0.056 0.011 9 Oval cells Endoderm Liver FA1,pG2,Pref-1,ZOG,Delta1 delta like non-canonical Notch ligand 1 flag
Mm Hs KRT7 0.047 0 9 Oval cells Endoderm Liver CK7,K2C7 keratin 7 flag
Mm Hs KIT 0.012 0.003 7 Oval cells Endoderm Liver CD117,SCFR,C-Kit,PBT KIT proto-oncogene receptor tyrosine kinase Yflag
Mm Hs OSMR 0.01 0.017 1 Oval cells Endoderm Liver OSMRB oncostatin M receptor Yflag
Mm Hs ALB 0.008 0 5 Oval cells Endoderm Liver albumin Yflag
Mm Hs AFP 0.004 0 3 Oval cells Endoderm Liver FETA,HPAFP alpha fetoprotein Yflag

Datasets with computationally identified Oval cells

SRA SRS tissue cluster cell type p-value FDR View
SRA608611 SRS2517316 Lung progenitors 0 Oval cells 6.04E-5 1.89E-3 view data
SRA608611 SRS2517316 Lung progenitors 1 Oval cells 8.58E-8 7.43E-6 view data
SRA608611 SRS2517316 Lung progenitors 3 Oval cells 1.09E-9 1.70E-7 view data
SRA608611 SRS2517316 Lung progenitors 4 Oval cells 8.40E-6 3.12E-4 view data
SRA608611 SRS2517317 Lung progenitors 5 Oval cells 9.60E-4 2.36E-2 view data
SRA638923 SRS2797055 Embryo 0 Oval cells 1.20E-4 4.68E-2 view data
SRA638923 SRS2797076 Mammary gland 2 Oval cells 1.34E-4 8.93E-3 view data
SRA638923 SRS2797082 Mammary gland 3 Oval cells 1.24E-6 8.82E-5 view data
SRA638923 SRS2797100 Ovary 7 Oval cells 7.20E-5 5.19E-3 view data
SRA638923 SRS2797122 Uterus 3 Oval cells 6.54E-4 3.22E-2 view data
SRA638923 SRS2797296 Mammary gland 2 Oval cells 6.38E-7 4.42E-5 view data
SRA625553 SRS2641016 Mammary epithelial cells 2 Oval cells 5.28E-6 4.39E-4 view data
SRA625553 SRS2641016 Mammary epithelial cells 4 Oval cells 5.98E-5 3.73E-3 view data
SRA625553 SRS2641016 Mammary epithelial cells 6 Oval cells 1.14E-3 3.48E-2 view data
SRA625553 SRS2641017 Mammary epithelial cells 2 Oval cells 4.26E-5 4.09E-3 view data
SRA625553 SRS2641017 Mammary epithelial cells 6 Oval cells 1.96E-5 2.22E-3 view data
SRA625553 SRS2641017 Mammary epithelial cells 7 Oval cells 1.31E-5 1.64E-3 view data
SRA625553 SRS2641018 Mammary epithelial cells 13 Oval cells 1.57E-4 7.06E-3 view data
SRA625553 SRS2641019 Mammary epithelial cells 9 Oval cells 6.13E-6 5.22E-4 view data
SRA625553 SRS2641019 Mammary epithelial cells 11 Oval cells 5.24E-4 2.00E-2 view data
SRA625553 SRS2641022 Mammary epithelial cells 4 Oval cells 2.19E-6 4.78E-4 view data
SRA625553 SRS2641022 Mammary epithelial cells 6 Oval cells 3.55E-5 3.88E-3 view data
SRA625553 SRS2641023 Mammary epithelial cells 2 Oval cells 3.52E-4 2.13E-2 view data
SRA625553 SRS2641023 Mammary epithelial cells 4 Oval cells 8.65E-6 1.25E-3 view data
SRA625553 SRS2641023 Mammary epithelial cells 8 Oval cells 1.68E-4 1.20E-2 view data
SRA639854 SRS2766803 Intestinal crypt epithelium 11 Oval cells 2.19E-4 9.22E-3 view data
SRA555753 SRS2135625 Neonatal mouse stomach organoid 4 Oval cells 2.25E-4 4.90E-2 view data
SRA603929 SRS2477904 Mammary gland epithelium cell 5 Oval cells 4.54E-4 4.62E-2 view data
SRA603929 SRS2477905 Mammary gland epithelium cell 2 Oval cells 4.68E-4 4.14E-2 view data
SRA603929 SRS2477905 Mammary gland epithelium cell 4 Oval cells 8.87E-5 1.27E-2 view data
SRA603929 SRS2477905 Mammary gland epithelium cell 7 Oval cells 1.99E-4 2.26E-2 view data
SRA603929 SRS2477905 Mammary gland epithelium cell 8 Oval cells 4.78E-4 4.14E-2 view data
SRA608353 SRS2517519 Hepatocellular carcinoma 3 Oval cells 6.39E-4 3.12E-2 view data
SRA608353 SRS2517519 Hepatocellular carcinoma 4 Oval cells 7.10E-6 5.54E-4 view data
SRA608353 SRS2517521 Hepatocellular carcinoma 0 Oval cells 7.18E-6 5.09E-4 view data
SRA608353 SRS2517521 Hepatocellular carcinoma 4 Oval cells 3.95E-7 3.42E-5 view data
SRA658915 SRS2944102 Tumor 3 Oval cells 1.36E-4 3.52E-2 view data
SRA658915 SRS2944103 Tumor 2 Oval cells 3.06E-5 1.91E-2 view data
SRA635094 SRS2725548 Embryoid body 0 Oval cells 6.75E-5 1.05E-2 view data
SRA635094 SRS2725549 Embryoid body 1 Oval cells 1.24E-3 4.59E-2 view data
SRA635094 SRS2725549 Embryoid body 2 Oval cells 1.28E-3 4.59E-2 view data
SRA691388 SRS3173558 Breast epithelium 4 Oval cells 1.82E-4 7.73E-3 view data
SRA691388 SRS3173558 Breast epithelium 5 Oval cells 7.10E-5 4.15E-3 view data
SRA691388 SRS3173558 Breast epithelium 7 Oval cells 8.99E-7 9.71E-5 view data
SRA691388 SRS3173558 Breast epithelium 8 Oval cells 1.76E-4 7.73E-3 view data
SRA732346 SRS3496836 Endothelial cells 7 Oval cells 3.65E-4 2.70E-2 view data
SRA732346 SRS3496838 Endothelial cells 0 Oval cells 2.84E-4 1.38E-2 view data
SRA732346 SRS3496838 Endothelial cells 1 Oval cells 2.75E-4 1.38E-2 view data
SRA732346 SRS3496838 Endothelial cells 3 Oval cells 1.16E-3 4.29E-2 view data
SRA732346 SRS3496838 Endothelial cells 4 Oval cells 1.38E-3 4.83E-2 view data
SRA732346 SRS3496838 Endothelial cells 5 Oval cells 8.57E-6 8.02E-4 view data
SRA732346 SRS3496838 Endothelial cells 7 Oval cells 2.86E-4 1.38E-2 view data
SRA704181 SRS3305829 Breast cancer cell line 5 Oval cells 2.87E-6 3.67E-4 view data
SRA704181 SRS3305829 Breast cancer cell line 6 Oval cells 2.54E-4 2.23E-2 view data
SRA704181 SRS3305829 Breast cancer cell line 8 Oval cells 1.01E-4 1.01E-2 view data
SRA704181 SRS3305830 Breast cancer cell line 4 Oval cells 9.27E-6 1.00E-3 view data
SRA704181 SRS3305830 Breast cancer cell line 7 Oval cells 1.30E-4 8.31E-3 view data
SRA704181 SRS3305831 Breast cancer cell line 1 Oval cells 1.80E-4 1.40E-2 view data
SRA704181 SRS3305831 Breast cancer cell line 4 Oval cells 2.86E-5 4.47E-3 view data
SRA704181 SRS3305831 Breast cancer cell line 5 Oval cells 1.06E-4 1.05E-2 view data
SRA704181 SRS3305832 Breast cancer cell line 2 Oval cells 6.91E-4 3.72E-2 view data
SRA704181 SRS3305832 Breast cancer cell line 5 Oval cells 6.49E-6 6.75E-4 view data
SRA704181 SRS3305832 Breast cancer cell line 7 Oval cells 1.54E-4 1.15E-2 view data
SRA711739 SRS3344652 Embryonic fibroblasts 2 Oval cells 3.49E-4 2.99E-2 view data
SRA711739 SRS3344652 Embryonic fibroblasts 5 Oval cells 1.62E-4 1.55E-2 view data
SRA711739 SRS3344652 Embryonic fibroblasts 8 Oval cells 3.93E-5 5.19E-3 view data
SRA711739 SRS3344657 Embryonic fibroblasts 0 Oval cells 3.45E-4 4.23E-2 view data
SRA711739 SRS3344657 Embryonic fibroblasts 2 Oval cells 4.45E-4 4.50E-2 view data
SRA711739 SRS3344657 Embryonic fibroblasts 6 Oval cells 2.41E-4 3.45E-2 view data
SRA711739 SRS3344657 Embryonic fibroblasts 9 Oval cells 2.23E-4 3.45E-2 view data
SRA711739 SRS3344657 Embryonic fibroblasts 10 Oval cells 3.16E-4 4.18E-2 view data
SRA711739 SRS3344658 Embryonic fibroblasts 2 Oval cells 5.65E-4 4.41E-2 view data
SRA711739 SRS3344658 Embryonic fibroblasts 3 Oval cells 2.21E-4 1.97E-2 view data
SRA711739 SRS3344658 Embryonic fibroblasts 6 Oval cells 7.34E-5 1.15E-2 view data
SRA711739 SRS3344661 Embryonic fibroblasts 0 Oval cells 3.09E-4 4.28E-2 view data
SRA711739 SRS3344662 Embryonic fibroblasts 2 Oval cells 1.56E-4 2.68E-2 view data
SRA585365 SRS2345685 Pancreas 6 Oval cells 3.87E-4 4.74E-2 view data
SRA585365 SRS3297650 Pancreas 4 Oval cells 3.81E-4 3.30E-2 view data
SRA760933 SRS3693061 Hepatocyte-derived liver progenitor-like cells 6 Oval cells 1.10E-4 3.83E-3 view data
SRA760933 SRS3693061 Hepatocyte-derived liver progenitor-like cells 11 Oval cells 9.72E-5 3.42E-3 view data
SRA760933 SRS3693061 Hepatocyte-derived liver progenitor-like cells 13 Oval cells 1.00E-7 5.09E-6 view data
SRA594984 SRS2397152 Embryonic skin 8 Oval cells 3.22E-4 2.01E-2 view data
SRA782908 SRS3815594 Placenta 0 Oval cells 3.89E-4 4.55E-2 view data
SRA782908 SRS3815594 Placenta 1 Oval cells 3.33E-5 1.56E-2 view data
SRA782908 SRS3815594 Placenta 2 Oval cells 1.89E-4 4.42E-2 view data
SRA782908 SRS3815597 Placenta 0 Oval cells 4.66E-5 8.10E-3 view data
SRA782908 SRS3815597 Placenta 3 Oval cells 2.30E-4 2.69E-2 view data
SRA782908 SRS3815599 Placenta 0 Oval cells 1.53E-4 2.51E-2 view data
SRA782908 SRS3815599 Placenta 1 Oval cells 1.84E-4 2.51E-2 view data
SRA782908 SRS3815599 Placenta 2 Oval cells 8.36E-5 1.83E-2 view data
SRA782908 SRS3815599 Placenta 4 Oval cells 1.72E-4 2.51E-2 view data
SRA782908 SRS3815600 Placenta 5 Oval cells 1.03E-5 3.12E-4 view data
SRA782908 SRS3815600 Placenta 12 Oval cells 2.23E-4 4.17E-3 view data