Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: A type of immune cell that has granules (small particles) with enzymes that are released during allergic reactions. Basophils are the least common of the granulocytes, representing about 0.5 to 1% of circulating white blood cells.

Gene expression markers for Basophils

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
6
Mm Hs CCL4 0.049 0 0.933 0.056 0.048 4 Basophils Mesoderm Immune system MIP-1-beta,Act-2,AT744.1,SCYA4 C-C motif chemokine ligand 4 flag
1
Mm Hs NPL 0.017 0 0.2 0.019 0.018 1 Basophils Mesoderm Immune system NPL1,DHDPS1,C1orf13 N-acetylneuraminate pyruvate lyase flag
1
Mm Hs WRN 0.004 0 0 0.006 0 2 Basophils Mesoderm Immune system RECQL2,RECQ3 Werner syndrome RecQ like helicase Yflag
1
Mm Hs NFIL3 0.014 0 0.2 0.003 0.016 1 Basophils Mesoderm Immune system E4BP4,NFIL3A,NF-IL3A,IL3BP1 nuclear factor, interleukin 3 regulated flag
1
Mm Hs TEC 0.001 0 0 0 0 1 Basophils Mesoderm Immune system PSCTK4 tec protein tyrosine kinase flag
1
Mm Hs OTUB2 0.006 0 0 0.014 0.005 2 Basophils Mesoderm Immune system FLJ21916,MGC3102,C14orf137 OTU deubiquitinase, ubiquitin aldehyde binding 2 flag
1
Mm Hs FAR2 0.004 0 0.067 0.01 0.003 1 Basophils Mesoderm Immune system FLJ10462,SDR10E2,MLSTD1 fatty acyl-CoA reductase 2 flag
1
Mm MCPT8 0.004 0 1 0 0.004 1 Basophils Mesoderm Immune system mast cell protease 8 flag
0
Mm Hs GPR183 0.019 0 0.267 0.049 0.012 3 Basophils Mesoderm Immune system EBI2 G protein-coupled receptor 183 flag
0
Mm Hs MBOAT1 0.006 0 0.333 0 0.007 1 Basophils Mesoderm Immune system MGC44669,dJ434O11.1,LPEAT1,OACT1 membrane bound O-acyltransferase domain containing 1 flag
0
Mm Hs L1CAM 0.018 0 0 0.002 0.021 5 Basophils Mesoderm Immune system CD171,HSAS1,SPG1,HSAS,MIC5 L1 cell adhesion molecule Yflag
0
Mm Hs JAZF1 0.002 0 0 0.008 0.001 1 Basophils Mesoderm Immune system TIP27,DKFZp761K2222,ZNF802 JAZF zinc finger 1 flag
0
Mm Hs INF2 0.015 0 0.067 0.018 0.015 1 Basophils Mesoderm Immune system MGC13251,C14orf151,C14orf173 inverted formin, FH2 and WH2 domain containing Yflag
0
Mm Hs IFITM1 0.059 0 1 0.032 0.064 3 Basophils Mesoderm Immune system 9-27,CD225,DSPA2a,IFI17 interferon induced transmembrane protein 1 flag
0
Mm Hs HIST1H2AC 0.01 0 0.067 0.032 0.004 1 Basophils Mesoderm Immune system H2AFL histone cluster 1 H2A family member c flag
0
Mm Hs HIST1H1D 0.006 0 0.067 0.02 0.003 1 Basophils Mesoderm Immune system H1.3,H1d,H1s-2,H1F3 histone cluster 1 H1 family member d flag
0
Mm Hs CD69 0.024 0 0.467 0.111 0.007 11 Basophils Mesoderm Immune system CLEC2C CD69 molecule flag
0
4 GM9895 0 NA NA NA NA 1 Basophils Mesoderm Immune system predicted gene 9895 flag
0
Mm Hs GABBR1 0.14 0 0 0.002 0.176 1 Basophils Mesoderm Immune system hGB1a,GPRC3A gamma-aminobutyric acid type B receptor subunit 1 flag
0
Mm Hs FBXO9 0.059 0 0.4 0.039 0.063 1 Basophils Mesoderm Immune system FBX9,NY-REN-57 F-box protein 9 flag
0
Mm Hs FADS1 0.05 0 0 0.077 0.038 1 Basophils Mesoderm Immune system D5D,FADSD5,TU12,FADS6,LLCDL1 fatty acid desaturase 1 flag
0
Mm Hs E2F8 0.002 0 0 0 0.003 1 Basophils Mesoderm Immune system FLJ23311 E2F transcription factor 8 flag
0
Mm DEFB40 0 0 0 0 0 1 Basophils Mesoderm Immune system defensin beta 40 flag
0
Mm Hs RNF39 0.001 0 0 0.002 0 1 Basophils Mesoderm Immune system HZFw1,LIRF ring finger protein 39 flag
0
Mm Hs ID1 0.149 0 0.267 0.21 0.128 2 Basophils Mesoderm Immune system dJ857M17.1.2,bHLHb24 inhibitor of DNA binding 1, HLH protein flag
0
Mm Hs UNC93A 0 0 0 0 0 1 Basophils Mesoderm Immune system dJ366N23.2,dJ366N23.1 unc-93 homolog A flag
0
Mm Hs TULP3 0.007 0 0 0.012 0 1 Basophils Mesoderm Immune system TUBL3 tubby like protein 3 flag
0
Hs SUPT3H 0.004 0 0 0.019 0 1 Basophils Mesoderm Immune system SPT3,SPT3L SPT3 homolog, SAGA and STAGA complex component flag
0
Mm Hs ST6GALNAC5 0.007 0 0 0.002 0 1 Basophils Mesoderm Immune system MGC3184,ST6GalNAcV,SIAT7E ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 flag
0
Mm Hs SNCAIP 0.002 0 0 0.006 0 1 Basophils Mesoderm Immune system SYPH1 synuclein alpha interacting protein Yflag
0
Mm Hs SLC26A8 0.003 0 0 0.012 0 1 Basophils Mesoderm Immune system solute carrier family 26 member 8 Yflag
0
Mm Hs SLC26A3 0.003 0 0 0.012 0 2 Basophils Mesoderm Immune system DRA,CLD solute carrier family 26 member 3 Yflag
0
Mm NT5C3 0.068 0 0.667 0 0.084 1 Basophils Mesoderm Immune system 5'-nucleotidase, cytosolic III flag
0
Mm Hs PLG 0.001 0 0 0 0.002 1 Basophils Mesoderm Immune system plasminogen Yflag
0
Mm Hs PLEKHG5 0.003 0 0.067 0.001 0.004 1 Basophils Mesoderm Immune system KIAA0720,Syx,GEF720,Tech pleckstrin homology and RhoGEF domain containing G5 Yflag
0
Hs PIGY 0 NA NA NA NA 1 Basophils Mesoderm Immune system MGC14156 phosphatidylinositol glycan anchor biosynthesis class Y Yflag
0
Mm Hs PERP 0.077 0 0.133 0.168 0.052 3 Basophils Mesoderm Immune system PIGPC1,dJ496H19.1,KCP1,THW,KRTCAP1 PERP, TP53 apoptosis effector flag
0
Mm Hs PDZD4 0.005 0 0 0 0.006 1 Basophils Mesoderm Immune system KIAA1444,LU1,FLJ34125,PDZRN4L,LNX5,PDZK4 PDZ domain containing 4 flag
0
Mm Hs PDK3 0.015 0 0 0.006 0.017 1 Basophils Mesoderm Immune system pyruvate dehydrogenase kinase 3 Yflag
0
Mm Hs P2RY1 0.003 0 0.133 0.002 0.003 3 Basophils Mesoderm Immune system P2Y1,SARCC purinergic receptor P2Y1 flag
0
Mm Hs OSBPL5 0.003 0 0 0 0.004 1 Basophils Mesoderm Immune system KIAA1534,ORP5,OBPH1 oxysterol binding protein like 5 flag
0
Mm Hs ITGAX 0.007 0 0 0.016 0.005 8 Basophils Mesoderm Immune system CD11c,CD11C integrin subunit alpha X flag
0
Mm Hs CD33 0.017 0 0 0.013 0.017 7 Basophils Mesoderm Immune system SIGLEC3,SIGLEC-3,FLJ00391 CD33 molecule flag
0
Mm Hs CCL3 0.036 0 1 0.008 0.042 9 Basophils Mesoderm Immune system G0S19-1,LD78ALPHA,MIP-1-alpha,SCYA3 C-C motif chemokine ligand 3 Yflag
0
Mm Hs GATA2 0.02 0 0.933 0.013 0.021 6 Basophils Mesoderm Immune system NFE1B GATA binding protein 2 Yflag
0
Mm Hs HDC 0.019 0 1 0.002 0.022 5 Basophils Mesoderm Immune system histidine decarboxylase Yflag
0
Mm Hs MS4A3 0.013 0 0.2 0.003 0.014 1 Basophils Mesoderm Immune system HTM4,CD20L membrane spanning 4-domains A3 flag
0
Mm Hs MS4A2 0.003 0 0.933 0.002 0.002 2 Basophils Mesoderm Immune system MS4A1,FCER1B,APY membrane spanning 4-domains A2 Yflag
0
Mm PRSS34 0.003 0 0.667 0 0.003 1 Basophils Mesoderm Immune system protease, serine 34 flag
0
Mm Hs IL4 0.002 0 0.6 0 0.002 4 Basophils Mesoderm Immune system BSF1,IL-4,BCGF1,BCGF-1,MGC79402 interleukin 4 flag
0
Mm Hs ITGB7 0.031 0 0.8 0 0.037 2 Basophils Mesoderm Immune system integrin subunit beta 7 flag
0
Hs IL4R 0.002 0 0 0.01 0 4 Basophils Mesoderm Immune system CD124 interleukin 4 receptor Yflag
0
Mm Hs CD44 0.127 0 0.133 0.3 0.088 9 Basophils Mesoderm Immune system IN,MC56,Pgp1,CD44R,HCELL,CSPG8,MIC4,MDU2,MDU3 CD44 molecule (Indian blood group) Yflag
0
Mm Hs ITGAM 0.025 0 0.067 0.003 0.03 8 Basophils Mesoderm Immune system CD11b,CR3A,CD11B integrin subunit alpha M Yflag
0
Mm Hs ITGAL 0.013 0 0.067 0.004 0.015 5 Basophils Mesoderm Immune system CD11A integrin subunit alpha L flag
0
Mm Hs CPA3 0.009 0 0.933 0.008 0.008 3 Basophils Mesoderm Immune system carboxypeptidase A3 flag
0
Mm Hs LTC4S 0.037 0 0 0.008 0.045 5 Basophils Mesoderm Immune system MGC33147 leukotriene C4 synthase Yflag
0
Mm Hs TLR4 0 0 0 0 0 10 Basophils Mesoderm Immune system hToll,CD284,TLR-4,ARMD10 toll like receptor 4 Yflag
0
Mm Hs FCER1A 0.004 0 0.867 0.018 0.001 3 Basophils Mesoderm Immune system FCE1A Fc fragment of IgE receptor Ia flag
0
Mm Hs ENPP3 0.002 0 0 0 0.002 2 Basophils Mesoderm Immune system PD-IBETA,gp130RB13-6,B10,CD203c,PDNP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 flag
0
Mm Hs CCR3 0.001 0 0 0 0.001 6 Basophils Mesoderm Immune system CC-CKR-3,CKR3,CD193,CMKBR3 C-C motif chemokine receptor 3 flag
0
Mm Hs IL3RA 0.008 0 0.6 0 0.007 3 Basophils Mesoderm Immune system CD123 interleukin 3 receptor subunit alpha flag
0
Mm Hs ACSS2 0.006 0 0.067 0.006 0.007 2 Basophils Mesoderm Immune system ACSA,AceCS,dJ1161H23.1,ACAS2 acyl-CoA synthetase short chain family member 2 flag
0
Mm CCL9 0.037 0 0.933 0 0.043 6 Basophils Mesoderm Immune system chemokine (C-C motif) ligand 9 flag
0
Mm Hs CABLES1 0.001 0 0 0 0.001 1 Basophils Mesoderm Immune system HsT2563,FLJ35924 Cdk5 and Abl enzyme substrate 1 flag
0
Mm Hs BMP4 0.019 0 0 0.024 0.017 6 Basophils Mesoderm Immune system BMP2B bone morphogenetic protein 4 Yflag
0
Mm Hs BACE1 0.022 0 0.067 0.004 0.026 3 Basophils Mesoderm Immune system BACE beta-secretase 1 flag
0
Mm Hs AQP9 0.003 0 0.533 0.003 0.003 3 Basophils Mesoderm Immune system SSC1,HsT17287 aquaporin 9 flag
0
Mm ALOX8 0 0 0.067 0 0 1 Basophils Mesoderm Immune system arachidonate 8-lipoxygenase flag
0
Mm Hs ADORA2B 0.004 0 0.133 0.004 0.004 1 Basophils Mesoderm Immune system adenosine A2b receptor flag
0
Mm Hs CEBPA 0.025 0 0.533 0 0.029 7 Basophils Mesoderm Immune system C/EBP-alpha,CEBP CCAAT enhancer binding protein alpha Yflag
0
Mm Hs GRM6 0.003 0 0.067 0 0.003 2 Basophils Mesoderm Immune system GPRC1F,mGlu6,MGLUR6,CSNB1B glutamate metabotropic receptor 6 Yflag
0
Mm Hs GPC4 0.01 0 0 0.008 0.011 1 Basophils Mesoderm Immune system K-glypican glypican 4 flag
0
Mm Hs FADS2 0.008 0 0 0.021 0.004 1 Basophils Mesoderm Immune system FADSD6,D6D,TU13,DES6,SLL0262,LLCDL2 fatty acid desaturase 2 flag
0
Mm Hs DNASE2B 0.001 0 0 0.001 0.001 1 Basophils Mesoderm Immune system DLAD deoxyribonuclease 2 beta flag
0
Mm MRGPRA6 0 0 0 0 0 1 Basophils Mesoderm Immune system MAS-related GPR, member A6 flag
0
Mm Hs IGFBP7 0.172 0 0.2 0.239 0.163 3 Basophils Mesoderm Immune system MAC25,IGFBP-7,FSTL2 insulin like growth factor binding protein 7 Yflag
0
Mm Hs HTR1B 0.002 0 0.067 0 0.002 1 Basophils Mesoderm Immune system 5-HT1B,HTR1D2,5-HT1DB 5-hydroxytryptamine receptor 1B flag
-1
GPR97 0 NA NA NA NA 1 Basophils Mesoderm Immune system flag
-1
Mm Hs LAMA5 0.008 0 0 0.012 0.008 2 Basophils Mesoderm Immune system laminin subunit alpha 5 flag
-1
Mm Hs CDH1 0.056 0 0.2 0.042 0.057 15 Basophils Mesoderm Immune system uvomorulin,CD324,UVO cadherin 1 Yflag
-2
Mm Hs HGF 0.002 0 0.533 0.008 0 3 Basophils Mesoderm Immune system F-TCF,HGFB,HPTA,DFNB39 hepatocyte growth factor Yflag

Datasets with computationally identified Basophils

SRA SRS tissue cluster cell type p-value FDR View
SRA834897 SRS4252175 Macrophage from E14.5 31 Basophils 1.72E-10 7.21E-8 view data
SRA797768 SRS3969076 Bone marrow mesenchymal and endothelial cells 5 Basophils 4.47E-7 1.55E-4 view data
SRA797768 SRS4351136 Bone marrow mesenchymal and endothelial cells 4 Basophils 1.06E-11 6.98E-9 view data
SRA797768 SRS4351136 Bone marrow mesenchymal and endothelial cells 11 Basophils 3.22E-9 1.42E-6 view data
SRA653146 SRS3044261 Lung 14 Basophils 1.16E-8 1.91E-6 view data
SRA834897 SRS4252176 Bone marrow 18 Basophils 1.75E-7 4.39E-5 view data
SRA653146 SRS3044246 Marrow 16 Basophils 1.60E-9 3.90E-7 view data
SRA585365 SRS2345687 Pancreas 29 Basophils 5.81E-11 7.72E-8 view data
SRA653146 SRS3044247 Marrow 15 Basophils 3.71E-12 9.79E-10 view data
SRA866994 SRS4545958 Dura mater 25 Basophils 1.99E-12 5.94E-10 view data
SRA585365 SRS3297651 Pancreas 28 Basophils 1.00E-10 6.34E-8 view data
SRA653146 SRS2874278 Bone marrow 16 Basophils 4.56E-22 2.21E-19 view data
SRA638923 SRS2960038 Pancreas 11 Basophils 4.90E-5 8.47E-3 view data
SRA839328 SRS4292911 Sorted myeloid cells 14 Basophils 3.11E-9 2.47E-6 view data
SRA611634 SRS2532209 Lung 13 Basophils 5.55E-8 2.93E-5 view data