Publications in the scientific literature

This list contains 1400 papers covering various topics of single cell sequencing. The list is compiled by searching for keywords in abstracts and titles using data from ftp://ftp.ncbi.nlm.nih.gov/pubmed/updatefiles/ and ftp://ftp.ncbi.nlm.nih.gov/pubmed/baseline/. The list is automatically updated once every 24h. Rows in blue indicate papers in "high impact" journals.

added within the last 24h to this list.

the study is about a computer software/algorithm/database/pure bioinformatics.

the study is about a new method.

the study is a review or comment.

the study does not involve mammalian scRNA-seq data or raw data are not public.

Include studies:

First author Journal Title Pub. date DOI Citations Action
Zwarycz Cell Mol Gastroenterol Hepatol IL22 Inhibits Epithelial Stem Cell Expansion in an Ileal Organoid Model. 2019-10-01 10.1016/j.jcmgh.2018.06.008 view
McCracken Curr. Opin. Lipidol. Unravelling atherosclerotic heterogeneity by single cell RNA sequencing. 2018-12-01 10.1097/MOL.0000000000000559 view
Behjati Ardakani Epigenetics Chromatin Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters. 2018-11-10 10.1186/s13072-018-0236-7 view
Balboa Elife Insulin mutations impair beta-cell development in a patient-derived iPSC model of neonatal diabetes. 2018-11-09 10.7554/eLife.38519 view
Zhu Elife T-ALL leukemia stem cell 'stemness' is epigenetically controlled by the master regulator SPI1. 2018-11-09 10.7554/eLife.38314 view
Khong Stem Cells Single-Cell Transcriptomics of Human Mesenchymal Stem Cells Reveal Age-Related Cellular Subpopulation Depletion and Impaired Regenerative Function. 2018-11-09 10.1002/stem.2934 view
Boroviak Development Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development. 2018-11-09 10.1242/dev.167833 view
Jindal Nat Commun Discovery of rare cells from voluminous single cell expression data. 2018-11-09 10.1038/s41467-018-07234-6 view
Lu J Mol Cell Biol Single-cell analyses identify distinct and intermediate states of zebrafish pancreatic islet development. 2018-11-08 10.1093/jmcb/mjy064 view
Westoby Genome Biol. Simulation-based benchmarking of isoform quantification in single-cell RNA-seq. 2018-11-07 10.1186/s13059-018-1571-5 view
Yin J. Biol. Chem. Single-cell RNA-Seq analysis identifies a noncoding interleukin 4 (IL-4) RNA that post-transcriptionally up-regulates IL-4 production in T helper cells. 2018-11-07 10.1074/jbc.RA118.004111 view
Revinski Nat Commun CDC20B is required for deuterosome-mediated centriole production in multiciliated cells. 2018-11-07 10.1038/s41467-018-06768-z view
Kumar Cell Rep Analysis of Single-Cell RNA-Seq Identifies Cell-Cell Communication Associated with Tumor Characteristics. 2018-11-06 10.1016/j.celrep.2018.10.047 view
Talwar Sci Rep AutoImpute: Autoencoder based imputation of single-cell RNA-seq data. 2018-11-05 10.1038/s41598-018-34688-x view
Salzer Cell Identity Noise and Adipogenic Traits Characterize Dermal Fibroblast Aging. 2018-11-03 10.1016/j.cell.2018.10.012 1 view
Wang Sci Immunol Combination cancer immunotherapy targeting PD-1 and GITR can rescue CD8+ T cell dysfunction and maintain memory phenotype. 2018-11-02 10.1126/sciimmunol.aat7061 view
Jusino J Cancer Metastasis Treat Centrosome aberrations and chromosome instability contribute to tumorigenesis and intra-tumor heterogeneity. 2018-11-01 10.20517/2394-4722.2018.24 view
Tasic Nature Shared and distinct transcriptomic cell types across neocortical areas. 2018-11-01 10.1038/s41586-018-0654-5 view
Bhaduri Nature Single-cell sequencing paints diverse pictures of the brain. 2018-11-01 10.1038/d41586-018-07027-3 view
Shih PLoS ONE Identification of grade and origin specific cell populations in serous epithelial ovarian cancer by single cell RNA-seq. 2018-11-01 10.1371/journal.pone.0206785 view
Moffitt Science Molecular, spatial and functional single-cell profiling of the hypothalamic preoptic region. 2018-11-01 10.1126/science.aau5324 view
Bernard Clin. Cancer Res. Single Cell Transcriptomics of Pancreatic Cancer Precursors Demonstrates Epithelial and Microenvironmental Heterogeneity as an Early Event in Neoplastic Progression. 2018-11-01 10.1158/1078-0432.CCR-18-1955 view
Dobnikar Nat Commun Disease-relevant transcriptional signatures identified in individual smooth muscle cells from healthy mouse vessels. 2018-11-01 10.1038/s41467-018-06891-x view
Scott Cell Tissue Unit-ed: Lung Cells Team up to Drive Alveolar Macrophage Development. 2018-11-01 10.1016/j.cell.2018.10.031 view
Jerby-Arnon Cell A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade. 2018-11-01 10.1016/j.cell.2018.09.006 view
Wallrapp Immunol. Rev. Type 2 innate lymphoid cells in the induction and resolution of tissue inflammation. 2018-11-01 10.1111/imr.12702 1 view
Uniken Venema Gastroenterology Single-cell RNA Sequencing of Blood and Ileal T cells From Patients With Crohn's Disease Reveals Tissue-specific Characteristics and Drug Targets. 2018-11-01 10.1053/j.gastro.2018.10.046 view
Jiang Cell Discov Maintenance of human haematopoietic stem and progenitor cells in vitro using a chemical cocktail. 2018-11-01 10.1038/s41421-018-0059-5 view
Yang NPJ Breast Cancer An assessment of prognostic immunity markers in breast cancer. 2018-11-01 10.1038/s41523-018-0088-0 view
McTaggart BioTechniques Chromium sequencing: the doors open for genomics of obligate plant pathogens. 2018-11-01 10.2144/btn-2018-0019 view
See Front Immunol A Single-Cell Sequencing Guide for Immunologists. 2018-11-01 10.3389/fimmu.2018.02425 view
Wu PLoS ONE Characterization of sensory neuronal subtypes innervating mouse tongue. 2018-11-01 10.1371/journal.pone.0207069 view
Crinier Immunity High-Dimensional Single-Cell Analysis Identifies Organ-Specific Signatures and Conserved NK Cell Subsets in Humans and Mice. 2018-11-01 10.1016/j.immuni.2018.09.009 view
Hosoya J. Immunol. High-Throughput Single-Cell Sequencing of both TCR-β Alleles. 2018-10-31 10.4049/jimmunol.1800774 view
Ackers-Johnson Nat Commun Following hearts, one cell at a time: recent applications of single-cell RNA sequencing to the understanding of heart disease. 2018-10-30 10.1038/s41467-018-06894-8 view
Cembrowski Elife The subiculum is a patchwork of discrete subregions. 2018-10-30 10.7554/eLife.37701 view
Codeluppi Nat. Methods Spatial organization of the somatosensory cortex revealed by osmFISH. 2018-10-30 10.1038/s41592-018-0175-z view
Dominguez Gutierrez Endocrinology Gene Signature of the Human Pancreatic ε-Cell. 2018-10-30 10.1210/en.2018-00833 view
Zhu Nat. Biotechnol. Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data. 2018-10-29 10.1038/nbt.4260 view
Gerber Science Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration. 2018-10-26 10.1126/science.aaq0681 view
Kim Circ. Res. Transcriptome Analysis Reveals Nonfoamy Rather Than Foamy Plaque Macrophages Are Proinflammatory in Atherosclerotic Murine Models. 2018-10-26 10.1161/CIRCRESAHA.118.312804 view
Tanaka Cancer Med Single-cell RNA-seq analysis reveals the platinum resistance gene COX7B and the surrogate marker CD63. 2018-10-26 10.1002/cam4.1828 view
Biton Cell T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation. 2018-10-26 10.1016/j.cell.2018.10.008 view
Paul J Vis Exp Single-cell RNA Sequencing of Fluorescently Labeled Mouse Neurons Using Manual Sorting and Double In Vitro Transcription with Absolute Counts Sequencing (DIVA-Seq). 2018-10-26 10.3791/58690 view
Suber Respir. Res. FBXO17 promotes cell proliferation through activation of Akt in lung adenocarcinoma cells. 2018-10-25 10.1186/s12931-018-0910-0 view
Sommarin J Vis Exp A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations. 2018-10-25 10.3791/57831 view
Fan J. Exp. Med. CD49b defines functionally mature Treg cells that survey skin and vascular tissues. 2018-10-24 10.1084/jem.20181442 view
Hagai Nature Gene expression variability across cells and species shapes innate immunity. 2018-10-24 10.1038/s41586-018-0657-2 3 view
Athar Nucleic Acids Res. ArrayExpress update - from bulk to single-cell expression data. 2018-10-24 10.1093/nar/gky964 view
Raj Nat Protoc Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR-Cas9 barcodes by scGESTALT. 2018-10-23 10.1038/s41596-018-0058-x view
Mok Cell Rep More Than the Sum of Its Parts: Single-Cell Transcriptomics Reveals Epidermal Cell States. 2018-10-23 10.1016/j.celrep.2018.10.041 view
Cheng Cell Rep Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution. 2018-10-23 10.1016/j.celrep.2018.09.006 view
Liu PLoS Biol. Quantitative assessment of cell population diversity in single-cell landscapes. 2018-10-22 10.1371/journal.pbio.2006687 view
MacParland Nat Commun Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations. 2018-10-22 10.1038/s41467-018-06318-7 2 view
Graham Nat. Med. Antigen discovery and specification of immunodominance hierarchies for MHCII-restricted epitopes. 2018-10-22 10.1038/s41591-018-0203-7 view
D'Gama Nat. Neurosci. Somatic mosaicism and neurodevelopmental disease. 2018-10-22 10.1038/s41593-018-0257-3 view
Yuan Nucleic Acids Res. CancerSEA: a cancer single-cell state atlas. 2018-10-17 10.1093/nar/gky939 view
Xiao Genome Biol. Holo-Seq: single-cell sequencing of holo-transcriptome. 2018-10-17 10.1186/s13059-018-1553-7 view
Müller Nature Genome organization and DNA accessibility control antigenic variation in trypanosomes. 2018-10-17 10.1038/s41586-018-0619-8 view
Cheung Endocrinology Single-cell RNA sequencing reveals novel markers of male pituitary stem cells and hormone-producing cell-types. 2018-10-17 10.1210/en.2018-00750 view
Joost Cell Rep Single-Cell Transcriptomics of Traced Epidermal and Hair Follicle Stem Cells Reveals Rapid Adaptations during Wound Healing. 2018-10-16 10.1016/j.celrep.2018.09.059 view
Gubin Cell High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy. 2018-10-16 10.1016/j.cell.2018.09.030 view
Subramanian Parimalam Anal. Chem. Electrical Lysis and RNA Extraction from Single Cells Fixed by Dithiobis(succinimidyl propionate). 2018-10-16 10.1021/acs.analchem.8b02338 view
Liu Cancer Res. Circulating glioma cells exhibit stem cell-like properties. 2018-10-15 10.1158/0008-5472.CAN-18-0650 view
Marie Proc. Natl. Acad. Sci. U.S.A. Single-molecule DNA-mapping and whole-genome sequencing of individual cells. 2018-10-15 10.1073/pnas.1804194115 view
Owen Nat Commun Single cell RNA-seq reveals profound transcriptional similarity between Barrett's oesophagus and oesophageal submucosal glands. 2018-10-15 10.1038/s41467-018-06796-9 view
Matson J Vis Exp Isolation of Adult Spinal Cord Nuclei for Massively Parallel Single-nucleus RNA Sequencing. 2018-10-12 10.3791/58413 view
Guo Cell Res. The adult human testis transcriptional cell atlas. 2018-10-12 10.1038/s41422-018-0099-2 view
Molenaar Circ. Res. Single-Cell Sequencing of the Mammalian Heart. 2018-10-12 10.1161/CIRCRESAHA.118.313531 view
Ó hAinmhire Am. J. Physiol. Renal Physiol. A conditionally immortalized Gli1-positive kidney mesenchymal cell line models myofibroblast transition. 2018-10-10 10.1152/ajprenal.00460.2018 view
Gao Analyst Recent advances in single cell manipulation and biochemical analysis on microfluidics. 2018-10-09 10.1039/c8an01186a view
Sharma Mol. Immunol. Using single cell analysis for translational studies in immune mediated diseases: Opportunities and challenges. 2018-10-06 10.1016/j.molimm.2018.09.020 view
Shi Brief. Bioinformatics Quantifying Waddington's epigenetic landscape: a comparison of single-cell potency measures. 2018-10-05 10.1093/bib/bby093 view
Zhang Nucleic Acids Res. CellMarker: a manually curated resource of cell markers in human and mouse. 2018-10-05 10.1093/nar/gky900 view
Manh Nguyen Appl. Environ. Microbiol. Effective soil extraction method for cultivating previously uncultured soil bacteria. 2018-10-05 10.1128/AEM.01145-18 view
Upadhaya J. Exp. Med. Kinetics of adult hematopoietic stem cell differentiation in vivo. 2018-10-05 10.1084/jem.20180136 view
Kilian J. Biol. Chem. Role of phospholipid synthesis in the development and differentiation of malaria parasites in the blood. 2018-10-04 10.1074/jbc.R118.003213 view
Svensson Mol. Cell RNA Velocity: Molecular Kinetics from Single-Cell RNA-Seq. 2018-10-04 10.1016/j.molcel.2018.09.026 view
Boulais Immunity The Majority of CD45- Ter119- CD31- Bone Marrow Cell Fraction Is of Hematopoietic Origin and Contains Erythroid and Lymphoid Progenitors. 2018-10-04 10.1016/j.immuni.2018.08.019 view
Wurmus Gigascience PiGx: Reproducible genomics analysis pipelines with GNU Guix. 2018-10-02 10.1093/gigascience/giy123 view
Bradley Cell Rep Single-Cell Analysis of Quiescent HIV Infection Reveals Host Transcriptional Profiles that Regulate Proviral Latency. 2018-10-02 10.1016/j.celrep.2018.09.020 view
Qiu Nat. Med. Renal compartment-specific genetic variation analyses identify new pathways in chronic kidney disease. 2018-10-01 10.1038/s41591-018-0194-4 view
Bresciani MethodsX An efficient dissociation protocol for generation of single cell suspension from zebrafish embryos and larvae. 2018-10-01 10.1016/j.mex.2018.10.009 view
Peng F1000Res Regulatory network characterization in development: challenges and opportunities. 2018-10-01 10.12688/f1000research.15271.1 view
Cho Lett Biomath Modelling acute myeloid leukaemia in a continuum of differentiation states. 2018-10-01 10.1080/23737867.2018.1472532 1 view
Brancucci Wellcome Open Res Probing Plasmodium falciparum sexual commitment at the single-cell level. 2018-10-01 10.12688/wellcomeopenres.14645.4 view
Duò F1000Res A systematic performance evaluation of clustering methods for single-cell RNA-seq data. 2018-10-01 10.12688/f1000research.15666.2 3 view
Liang Comput Struct Biotechnol J A Review of Matched-pairs Feature Selection Methods for Gene Expression Data Analysis. 2018-10-01 10.1016/j.csbj.2018.02.005 1 view
Guo Nat. Med. Publisher Correction: Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing. 2018-10-01 10.1038/s41591-018-0167-7 view
Lieberman PLoS ONE CaSTLe - Classification of single cells by transfer learning: Harnessing the power of publicly available single cell RNA sequencing experiments to annotate new experiments. 2018-10-01 10.1371/journal.pone.0205499 view
Suryawanshi Sci Adv A single-cell survey of the human first-trimester placenta and decidua. 2018-10-01 10.1126/sciadv.aau4788 view
Apostolidis Front Immunol Single Cell RNA Sequencing Identifies HSPG2 and APLNR as Markers of Endothelial Cell Injury in Systemic Sclerosis Skin. 2018-10-01 10.3389/fimmu.2018.02191 view
Bryan Hum. Mol. Genet. Identifying core biological processes distinguishing human eye tissues with precise systems-level gene expression analyses and weighted correlation networks. 2018-10-01 10.1093/hmg/ddy239 view
Mays PLoS ONE Single-cell RNA sequencing of the mammalian pineal gland identifies two pinealocyte subtypes and cell type-specific daily patterns of gene expression. 2018-10-01 10.1371/journal.pone.0205883 view
Tripathy Front Mol Neurosci Assessing Transcriptome Quality in Patch-Seq Datasets. 2018-10-01 10.3389/fnmol.2018.00363 view
Li J Vis Exp Single-cell Transcriptomic Analyses of Mouse Pancreatic Endocrine Cells. 2018-09-30 10.3791/58000 view
Chambers Respirology Transcriptomics and single-cell RNA-sequencing. 2018-09-28 10.1111/resp.13412 view
Hepler Elife Identification of functionally distinct fibro-inflammatory and adipogenic stromal subpopulations in visceral adipose tissue of adult mice. 2018-09-28 10.7554/eLife.39636 view
Nirmal Cancer Immunol Res Immune cell gene signatures for profiling the microenvironment of solid tumors. 2018-09-28 10.1158/2326-6066.CIR-18-0342 view
Meilhac Nat Rev Cardiol The deployment of cell lineages that form the mammalian heart. 2018-09-28 10.1038/s41569-018-0086-9 1 view
Biase iScience Rainbow-Seq: Combining Cell Lineage Tracing with Single-Cell RNA Sequencing in Preimplantation Embryos. 2018-09-28 10.1016/j.isci.2018.08.009 view
Daniszewski iScience Single-Cell Profiling Identifies Key Pathways Expressed by iPSCs Cultured in Different Commercial Media. 2018-09-28 10.1016/j.isci.2018.08.016 view
Cohen Cell Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting. 2018-09-28 10.1016/j.cell.2018.09.009 view
Ranu Nucleic Acids Res. Targeting individual cells by barcode in pooled sequence libraries. 2018-09-26 10.1093/nar/gky856 view
Tischler EMBO J. Metabolic regulation of pluripotency and germ cell fate through α-ketoglutarate. 2018-09-26 10.15252/embj.201899518 1 view
Arneson Nat Commun Single cell molecular alterations reveal target cells and pathways of concussive brain injury. 2018-09-25 10.1038/s41467-018-06222-0 view
Byrnes Nat Commun Lineage dynamics of murine pancreatic development at single-cell resolution. 2018-09-25 10.1038/s41467-018-06176-3 view
Pezoldt Nat Commun Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes. 2018-09-25 10.1038/s41467-018-06423-7 view
Wang Cell Rep Dissecting the Global Dynamic Molecular Profiles of Human Fetal Kidney Development by Single-Cell RNA Sequencing. 2018-09-25 10.1016/j.celrep.2018.08.056 view
Avey Cell Rep Single-Cell RNA-Seq Uncovers a Robust Transcriptional Response to Morphine by Glia. 2018-09-25 10.1016/j.celrep.2018.08.080 view
Paulson Nat Commun Acquired cancer resistance to combination immunotherapy from transcriptional loss of class I HLA. 2018-09-24 10.1038/s41467-018-06300-3 2 view
AlJanahi Mol Ther Methods Clin Dev An Introduction to the Analysis of Single-Cell RNA-Sequencing Data. 2018-09-21 10.1016/j.omtm.2018.07.003 view
Jin JCI Insight Chronic infection stunts macrophage heterogeneity and disrupts immune-mediated myogenesis. 2018-09-20 10.1172/jci.insight.121549 view
Farhadian JCI Insight Single-cell RNA sequencing reveals microglia-like cells in cerebrospinal fluid during virologically suppressed HIV. 2018-09-20 10.1172/jci.insight.121718 view
Florian PLoS Biol. Aging alters the epigenetic asymmetry of HSC division. 2018-09-20 10.1371/journal.pbio.2003389 view
Leung Genome Med Single-cell transcriptomics reveal that PD-1 mediates immune tolerance by regulating proliferation of regulatory T cells. 2018-09-20 10.1186/s13073-018-0581-y view
Elias J. Pathol. Primordial germ cells as a potential shared cell of origin for mucinous cystic neoplasms of the pancreas and mucinous ovarian tumors. 2018-09-19 10.1002/path.5161 view
Tong Cancer Commun (Lond) Transcriptomic but not genomic variability confers phenotype of breast cancer stem cells. 2018-09-19 10.1186/s40880-018-0326-8 view
Song Sci Rep Genetic and scRNA-seq Analysis Reveals Distinct Cell Populations that Contribute to Salivary Gland Development and Maintenance. 2018-09-19 10.1038/s41598-018-32343-z view
Horie Genes Dev. Regulatory cocktail for dopaminergic neurons in a protovertebrate identified by whole-embryo single-cell transcriptomics. 2018-09-18 10.1101/gad.317669.118 view
Shang Gigascience Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation. 2018-09-18 10.1093/gigascience/giy117 view
Lindström Am. J. Kidney Dis. Single-Cell RNA Sequencing of the Adult Mouse Kidney: From Molecular Cataloging of Cell Types to Disease-Associated Predictions. 2018-09-18 10.1053/j.ajkd.2018.07.002 view
Halpern Nat. Biotechnol. Paired-cell sequencing enables spatial gene expression mapping of liver endothelial cells. 2018-09-17 10.1038/nbt.4231 view
Cunha Cell LC3-Associated Phagocytosis in Myeloid Cells Promotes Tumor Immune Tolerance. 2018-09-17 10.1016/j.cell.2018.08.061 view
Wu Cancer Lett. Single-cell RNA sequencing reveals diverse intratumoral heterogeneities and gene signatures of two types of esophageal cancers. 2018-09-14 10.1016/j.canlet.2018.09.017 view
Zeng Stem Cell Res Ther Revealing cellular and molecular complexity of the central nervous system using single cell sequencing. 2018-09-13 10.1186/s13287-018-0985-z view
Duan Neuron PDGFRβ Cells Rapidly Relay Inflammatory Signal from the Circulatory System to Neurons via Chemokine CCL2. 2018-09-12 10.1016/j.neuron.2018.08.030 view
Petitpré Nat Commun Neuronal heterogeneity and stereotyped connectivity in the auditory afferent system. 2018-09-12 10.1038/s41467-018-06033-3 view
Li Stem Cells Transl Med Generation of Functional Hepatocytes from Human Adipose-Derived MYC+ KLF4+ GMNN+ Stem Cells Analyzed by Single-Cell RNA-Seq Profiling. 2018-09-11 10.1002/sctm.17-0273 view
Lukassen Sci Data Single-cell RNA sequencing of adult mouse testes. 2018-09-11 10.1038/sdata.2018.192 view
Grootens Blood Adv Deciphering the differentiation trajectory from hematopoietic stem cells to mast cells. 2018-09-11 10.1182/bloodadvances.2018019539 view
Sousa EMBO Rep. Single-cell transcriptomics reveals distinct inflammation-induced microglia signatures. 2018-09-11 10.15252/embr.201846171 view
Costa Nat Commun GraphDDP: a graph-embedding approach to detect differentiation pathways in single-cell-data using prior class knowledge. 2018-09-11 10.1038/s41467-018-05988-7 view
Gruber Nat. Methods Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms. 2018-09-10 10.1038/s41592-018-0114-z view
Sloan Nat Protoc Generation and assembly of human brain region-specific three-dimensional cultures. 2018-09-10 10.1038/s41596-018-0032-7 view
Carter Curr. Biol. A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum. 2018-09-10 10.1016/j.cub.2018.07.062 view
Yang Bioinformatics SAFE-clustering: Single-cell Aggregated (From Ensemble) Clustering for Single-cell RNA-seq Data. 2018-09-08 10.1093/bioinformatics/bty793 1 view
Birnbaum Annu. Rev. Genet. Power in Numbers: Single-Cell RNA-Seq Strategies to Dissect Complex Tissues. 2018-09-07 10.1146/annurev-genet-120417-031247 view
Gokey JCI Insight MEG3 is increased in idiopathic pulmonary fibrosis and regulates epithelial cell differentiation. 2018-09-06 10.1172/jci.insight.122490 view
Sabbagh Elife Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells. 2018-09-06 10.7554/eLife.36187 view
Fan Dev. Cell Single Cell and Open Chromatin Analysis Reveals Molecular Origin of Epidermal Cells of the Skin. 2018-09-06 10.1016/j.devcel.2018.08.010 view
Volpato Stem Cell Reports Reproducibility of Molecular Phenotypes after Long-Term Differentiation to Human iPSC-Derived Neurons: A Multi-Site Omics Study. 2018-09-06 10.1016/j.stemcr.2018.08.013 view
Tay Acta Neuropathol Commun Unique microglia recovery population revealed by single-cell RNAseq following neurodegeneration. 2018-09-05 10.1186/s40478-018-0584-3 view
Chiu Development A novel role for Lyl1 in primitive erythropoiesis. 2018-09-05 10.1242/dev.162990 view
Karaayvaz Nat Commun Unravelling subclonal heterogeneity and aggressive disease states in TNBC through single-cell RNA-seq. 2018-09-04 10.1038/s41467-018-06052-0 view
Sena Sci Rep Unique Molecular Identifiers reveal a novel sequencing artefact with implications for RNA-Seq based gene expression analysis. 2018-09-03 10.1038/s41598-018-31064-7 view
Kadnikov Syst. Appl. Microbiol. Phylogeny and physiology of candidate phylum BRC1 inferred from the first complete metagenome-assembled genome obtained from deep subsurface aquifer. 2018-09-03 10.1016/j.syapm.2018.08.013 view
Camp Nat. Methods Single-cell genomics to guide human stem cell and tissue engineering. 2018-09-01 10.1038/s41592-018-0113-0 view
Bloom PeerJ Estimating the frequency of multiplets in single-cell RNA sequencing from cell-mixing experiments. 2018-09-01 10.7717/peerj.5578 view
Mars Brisbin Front Microbiol Intra-host Symbiont Diversity and Extended Symbiont Maintenance in Photosymbiotic Acantharea (Clade F). 2018-09-01 10.3389/fmicb.2018.01998 view
Freytag F1000Res Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data. 2018-09-01 10.12688/f1000research.15809.1 2 view
Lythe Immunol. Rev. Some deterministic and stochastic mathematical models of naïve T-cell homeostasis. 2018-09-01 10.1111/imr.12696 1 view
Nguyen Front Cell Dev Biol Experimental Considerations for Single-Cell RNA Sequencing Approaches. 2018-09-01 10.3389/fcell.2018.00108 1 view
Vanlandewijck Methods Mol. Biol. Single-Cell mRNA Sequencing of the Mouse Brain Vasculature. 2018-09-01 10.1007/978-1-4939-8712-2_21 view
Puram Mol Cell Oncol Single cell RNA-seq highlights a role for a partial EMT in head and neck cancer. 2018-09-01 10.1080/23723556.2018.1448244 view
Menon Development Single-cell analysis of progenitor cell dynamics and lineage specification in the human fetal kidney. 2018-08-30 10.1242/dev.164038 view
Klum EMBO Rep. Sequentially acting SOX proteins orchestrate astrocyte- and oligodendrocyte-specific gene expression. 2018-08-30 10.15252/embr.201846635 view
Cacchiarelli Cell Syst Aligning Single-Cell Developmental and Reprogramming Trajectories Identifies Molecular Determinants of Myogenic Reprogramming Outcome. 2018-08-30 10.1016/j.cels.2018.07.006 view
Eling Cell Syst Correcting the Mean-Variance Dependency for Differential Variability Testing Using Single-Cell RNA Sequencing Data. 2018-08-29 10.1016/j.cels.2018.06.011 1 view
Zhu Cell Rep Identification of an Early Unipotent Neutrophil Progenitor with Pro-tumoral Activity in Mouse and Human Bone Marrow. 2018-08-28 10.1016/j.celrep.2018.07.097 view
Karki Cell Rep Regulated Capture of Vκ Gene Topologically Associating Domains by Transcription Factories. 2018-08-28 10.1016/j.celrep.2018.07.091 view
Buus Blood Adv Single-cell heterogeneity in Sézary syndrome. 2018-08-28 10.1182/bloodadvances.2018022608 view
Liu Genome Res. Single cell RNA-sequencing reveals the existence of naïve and primed pluripotency in pre-implantation rhesus monkey embryos. 2018-08-28 10.1101/gr.233437.117 view
Brummelman J. Exp. Med. High-dimensional single cell analysis identifies stem-like cytotoxic CD8+ T cells infiltrating human tumors. 2018-08-28 10.1084/jem.20180684 view
Hu Blood A cloning and expression system to probe T cell receptor specificity and assess functional avidity to neoantigens. 2018-08-27 10.1182/blood-2018-04-843763 view
Wang Cell Stem Cell Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis. 2018-08-24 10.1016/j.stem.2018.08.007 1 view
Swapna Genome Biol. Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation. 2018-08-24 10.1186/s13059-018-1498-x view
Habiel JCI Insight CCR10+ epithelial cells from idiopathic pulmonary fibrosis lungs drive remodeling. 2018-08-23 10.1172/jci.insight.122211 view
Wu BMC Genomics Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos. 2018-08-23 10.1186/s12864-018-5021-2 view
Crow Trends Genet. Co-expression in Single-Cell Analysis: Saving Grace or Original Sin? 2018-08-23 10.1016/j.tig.2018.07.007 view
Lall J. Comput. Biol. Structure-Aware Principal Component Analysis for Single-Cell RNA-seq Data. 2018-08-22 10.1089/cmb.2018.0027 view
Scavuzzo Nat Commun Endocrine lineage biases arise in temporally distinct endocrine progenitors during pancreatic morphogenesis. 2018-08-22 10.1038/s41467-018-05740-1 view
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