This list contains 4598 papers covering various topics of single cell sequencing. It is compiled by searching for keywords in abstracts and titles using data from ftp://ftp.ncbi.nlm.nih.gov/pubmed/updatefiles/ and ftp://ftp.ncbi.nlm.nih.gov/pubmed/baseline/. It is automatically updated daily. Rows in blue indicate papers in "high impact" journals.
Added within the last 24h to this list.
The study is about computer software/algorithm/database/pure bioinformatics.
The study is about a new method.
The study is a review or comment.
The study does not involve mammalian scRNA-seq data or raw data are not public.
Include studies:
| First author | Journal | Title | Pub. date | DOI | Citations | Action | |
|---|---|---|---|---|---|---|---|
| Zhu | Biosci Rep | Comprehensive Analysis Reveals a Prognostic and Therapeutic Biomarker CD3D in the Breast Carcinoma Microenvironment. | 2021-12-22 | 10.1042/BSR20202898 | view | ||
| Galise | Methods Mol Biol | Guidelines for Setting Up a mRNA Sequencing Experiment and Best Practices for Bioinformatic Data Analysis. | 2021-12-01 | 10.1007/978-1-0716-1201-9_10 | view | ||
| Alshetaiwi | Methods Mol Biol | Single-Cell Transcriptome Analysis Workflow for Splenic Myeloid-Derived Suppressor Cells from Murine Breast Cancer Models. | 2021-11-01 | 10.1007/978-1-0716-1060-2_14 | view | ||
| Strzelecka | Methods Mol Biol | Single-Cell Transcriptomic Analysis of Hematopoietic Cells. | 2021-11-01 | 10.1007/978-1-0716-0810-4_9 | view | ||
| Mahfooz | Methods Mol Biol | Combining Whole-Cell Patch-Clamp Recordings with Single-Cell RNA Sequencing. | 2021-10-01 | 10.1007/978-1-0716-0818-0_9 | view | ||
| Yu | Methods Mol. Biol. | Statistical and Bioinformatics Analysis of Data from Bulk and Single-Cell RNA Sequencing Experiments. | 2021-09-01 | 10.1007/978-1-0716-0849-4_9 | view | ||
| Ferrall-Fairbanks | Methods Mol. Biol. | Investigating Inter- and Intrasample Diversity of Single-Cell RNA Sequencing Datasets. | 2021-09-01 | 10.1007/978-1-0716-0849-4_10 | view | ||
| Massri | Methods Mol. Biol. | Methodologies for Following EMT In Vivo at Single Cell Resolution. | 2021-09-01 | 10.1007/978-1-0716-0779-4_23 | view | ||
| Pinder | Methods Mol. Biol. | Use of Chlamydial Elementary Bodies as Probes to Isolate Pathogen-Specific Human Monoclonal Antibodies. | 2021-09-01 | 10.1007/978-1-0716-0795-4_3 | view | ||
| Debnath | Methods Mol. Biol. | Specimen Preparation for Single-Cell Sequencing Analysis of Skeletal Cells. | 2021-09-01 | 10.1007/978-1-0716-0989-7_7 | view | ||
| Khatun | J Exp Med | Single-cell lineage mapping of a diverse virus-specific naive CD4 T cell repertoire. | 2021-03-01 | 10.1084/jem.20200650 | view | ||
| Schneider | Neurol Neuroimmunol Neuroinflamm | Chitinase 3-like 1 and neurofilament light chain in CSF and CNS atrophy in MS. | 2021-01-01 | 10.1212/NXI.0000000000000906 | view | ||
| Karlina | Life Sci Alliance | Identification and characterization of distinct brown adipocyte subtypes in C57BL/6J mice. | 2021-01-01 | 10.26508/lsa.202000924 | view | ||
| Rodriguez-Fraticelli | Curr Opin Hematol | Systems analysis of hematopoiesis using single-cell lineage tracing. | 2021-01-01 | 10.1097/MOH.0000000000000624 | view | ||
| Boufea | Life Sci Alliance | Single-cell RNA sequencing of human breast tumour-infiltrating immune cells reveals a γδ T-cell subtype associated with good clinical outcome. | 2021-01-01 | 10.26508/lsa.202000680 | view | ||
| Cohen | Life Sci Alliance | Meningeal lymphoid structures are activated under acute and chronic spinal cord pathologies. | 2021-01-01 | 10.26508/lsa.202000907 | view | ||
| Sticco | FASEB J | C1QL3 promotes cell-cell adhesion by mediating complex formation between ADGRB3/BAI3 and neuronal pentraxins. | 2021-01-01 | 10.1096/fj.202000351RR | view | ||
| Sinclair | J Heart Lung Transplant | The autotaxin-lysophosphatidic acid pathway mediates mesenchymal cell recruitment and fibrotic contraction in lung transplant fibrosis. | 2021-01-01 | 10.1016/j.healun.2020.10.005 | view | ||
| Lähde | Gastroenterology | Expression of R-Spondin 1 in ApcMin/+ Mice Suppresses Growth of Intestinal Adenomas by Altering Wnt and Transforming Growth Factor Beta Signaling. | 2021-01-01 | 10.1053/j.gastro.2020.09.011 | view | ||
| Tan | Medicine (Baltimore) | Study on the clinical mechanism of Tong-Xie-An-Chang Decoction in the treatment of diarrheal irritable bowel syndrome based on single-cell sequencing technology. | 2020-12-24 | 10.1097/MD.0000000000023868 | view | ||
| Yeung | Blood Adv | Lung megakaryocytes display distinct transcriptional and phenotypic properties. | 2020-12-22 | 10.1182/bloodadvances.2020002843 | view | ||
| Cheng | Brief Bioinform | Inferring microenvironmental regulation of gene expression from single-cell RNA sequencing data using scMLnet with an application to COVID-19. | 2020-12-21 | 10.1093/bib/bbaa327 | view | ||
| Chen | Nat Biotechnol | A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples. | 2020-12-21 | 10.1038/s41587-020-00748-9 | view | ||
| Bottes | Nat Neurosci | Long-term self-renewing stem cells in the adult mouse hippocampus identified by intravital imaging. | 2020-12-21 | 10.1038/s41593-020-00759-4 | view | ||
| Fodoulian | iScience | SARS-CoV-2 Receptors and Entry Genes Are Expressed in the Human Olfactory Neuroepithelium and Brain. | 2020-12-18 | 10.1016/j.isci.2020.101839 | view | ||
| Rabhi | iScience | Shifts of Immune Cell Populations Differ in Response to Different Effectors of Beige Remodeling of Adipose Tissue. | 2020-12-18 | 10.1016/j.isci.2020.101765 | view | ||
| Tatsuoka | iScience | Single-Cell Transcriptome Analysis Dissects the Replicating Process of Pancreatic Beta Cells in Partial Pancreatectomy Model. | 2020-12-18 | 10.1016/j.isci.2020.101774 | view | ||
| Hauser | iScience | Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development. | 2020-12-18 | 10.1016/j.isci.2020.101838 | view | ||
| Diaz Soria | Nat Commun | Single-cell atlas of the first intra-mammalian developmental stage of the human parasite Schistosoma mansoni. | 2020-12-18 | 10.1038/s41467-020-20092-5 | view | ||
| Wu | Nat Commun | Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype. | 2020-12-18 | 10.1038/s41467-020-20225-w | view | ||
| Loe | Trends Cell Biol | Mesenchymal Niches for Digestive Organ Development, Homeostasis, and Disease. | 2020-12-18 | 10.1016/j.tcb.2020.11.010 | view | ||
| Iqbal | Arterioscler Thromb Vasc Biol | Harnessing Single-Cell RNA Sequencing to Better Understand How Diseased Cells Behave the Way They Do in Cardiovascular Disease. | 2020-12-17 | 10.1161/ATVBAHA.120.314776 | view | ||
| Becker | J Crohns Colitis | Cannabinoid receptor activation on hematopoietic cells and enterocytes protects against colitis. | 2020-12-17 | 10.1093/ecco-jcc/jjaa253 | view | ||
| Balança | JCI Insight | PD-1 blockade restores helper activity of tumor-infiltrating exhausted PD-1hiCD39+ CD4 T cells. | 2020-12-17 | 10.1172/jci.insight.142513 | view | ||
| Guo | Cell Prolif | Systemic transcriptome comparison between early- And late-onset pre-eclampsia shows distinct pathology and novel biomarkers. | 2020-12-17 | 10.1111/cpr.12968 | view | ||
| Kuchina | Science | Microbial single-cell RNA sequencing by split-pool barcoding. | 2020-12-17 | 10.1126/science.aba5257 | view | ||
| Xiao | BMC Bioinformatics | NDRindex: a method for the quality assessment of single-cell RNA-Seq preprocessing data. | 2020-12-16 | 10.1186/s12859-020-03883-x | view | ||
| Chen | BMC Genomics | Using DenseFly algorithm for cell searching on massive scRNA-seq datasets. | 2020-12-16 | 10.1186/s12864-020-6651-8 | view | ||
| Wang | Cancer Discov | CRISPR Screening of CAR T Cells and Cancer Stem Cells Reveals Critical Dependencies for Cell-Based Therapies. | 2020-12-16 | 10.1158/2159-8290.CD-20-1243 | view | ||
| Dong | Commun Biol | Single-cell analysis supports a luminal-neuroendocrine transdifferentiation in human prostate cancer. | 2020-12-16 | 10.1038/s42003-020-01476-1 | view | ||
| Reichardt | Cell Signal | Controlling cardiac fibrosis through fibroblast state space modulation. | 2020-12-16 | 10.1016/j.cellsig.2020.109888 | view | ||
| Su | Cell Mol Gastroenterol Hepatol | Single-cell transcriptomics reveals zone-specific alterations of liver sinusoidal endothelial cells in cirrhosis. | 2020-12-16 | 10.1016/j.jcmgh.2020.12.007 | view | ||
| Kott | J Am Heart Assoc | Single-Cell Immune Profiling in Coronary Artery Disease: The Role of State-of-the-Art Immunophenotyping With Mass Cytometry in the Diagnosis of Atherosclerosis. | 2020-12-15 | 10.1161/JAHA.120.017759 | view | ||
| Zhang | Brief Bioinform | Goals and approaches for each processing step for single-cell RNA sequencing data. | 2020-12-15 | 10.1093/bib/bbaa314 | view | ||
| Chovatiya | Exp Dermatol | High resolution single cell transcriptomics reveals heterogeneity of self-renewing hair follicle stem cells. | 2020-12-15 | 10.1111/exd.14262 | view | ||
| Sanders | Gigascience | Identification of a differentiation stall in epithelial mesenchymal transition in histone H3-mutant diffuse midline glioma. | 2020-12-15 | 10.1093/gigascience/giaa136 | view | ||
| Chen | JCI Insight | A roadmap from single-cell transcriptome to patient classification for the immune response to trauma. | 2020-12-15 | 10.1172/jci.insight.145108 | view | ||
| Okuda | Am J Respir Crit Care Med | Secretory Cells Dominate Airway CFTR Expression and Function in Human Airway Superficial Epithelia. | 2020-12-15 | 10.1164/rccm.202008-3198OC | view | ||
| Cleveland | Immunity | Resolving the Instructions for αβ T Cell Development. | 2020-12-15 | 10.1016/j.immuni.2020.11.014 | view | ||
| Uchimura | Cell Rep | Human Pluripotent Stem Cell-Derived Kidney Organoids with Improved Collecting Duct Maturation and Injury Modeling. | 2020-12-15 | 10.1016/j.celrep.2020.108514 | view | ||
| Andueza | Cell Rep | Endothelial Reprogramming by Disturbed Flow Revealed by Single-Cell RNA and Chromatin Accessibility Study. | 2020-12-15 | 10.1016/j.celrep.2020.108491 | view | ||
| Zhu | Cancers (Basel) | GAS2L1 Is a Potential Biomarker of Circulating Tumor Cells in Pancreatic Cancer. | 2020-12-15 | 10.3390/cancers12123774 | view | ||
| Bruton | J Allergy Clin Immunol | Interrupting reactivation of immunological memory diverts the allergic response and prevents anaphylaxis. | 2020-12-15 | 10.1016/j.jaci.2020.11.042 | view | ||
| Wang | Osteoarthritis Cartilage | Novel biomarkers of intervertebral disc cells and evidence of stem cells in the intervertebral disc. | 2020-12-15 | 10.1016/j.joca.2020.12.005 | view | ||
| Zheng | Brief Bioinform | ColorCells: a database of expression, classification and functions of lncRNAs in single cells. | 2020-12-14 | 10.1093/bib/bbaa325 | view | ||
| Yu | Development | Loss of ESRP1 blocks mouse oocyte development and leads to female infertility. | 2020-12-14 | 10.1242/dev.196931 | view | ||
| Satterlee | Proc Natl Acad Sci U S A | Plant stem-cell organization and differentiation at single-cell resolution. | 2020-12-14 | 10.1073/pnas.2018788117 | view | ||
| Liu | Proc Natl Acad Sci U S A | Human embryonic stem cell-derived organoid retinoblastoma reveals a cancerous origin. | 2020-12-14 | 10.1073/pnas.2011780117 | view | ||
| Kim | J Immunol | Ubiquitination of MHC Class II by March-I Regulates Dendritic Cell Fitness. | 2020-12-14 | 10.4049/jimmunol.2000975 | view | ||
| Li | Sci Rep | Olfactomedin 4 mediation of prostate stem/progenitor-like cell proliferation and differentiation via MYC. | 2020-12-14 | 10.1038/s41598-020-78774-5 | view | ||
| McAndrews | Cancer Cell | Stromal Cells Exhibit Prevalent Genetic Aberrations in Colorectal Cancer. | 2020-12-14 | 10.1016/j.ccell.2020.11.003 | view | ||
| Ferrarini | Cancers (Basel) | The Evolving Knowledge on T and NK Cells in Classic Hodgkin Lymphoma: Insights into Novel Subsets Populating the Immune Microenvironment. | 2020-12-14 | 10.3390/cancers12123757 | view | ||
| Oliva-Olivera | Metabolism | Human adipose tissue-derived stem cell paracrine networks vary according metabolic risk and after TNFα-induced death: an analysis at the single-cell level. | 2020-12-14 | 10.1016/j.metabol.2020.154466 | view | ||
| Sun | J Invest Dermatol | Ovol1 regulates psoriasis-like skin inflammation and epidermal hyperplasia. | 2020-12-14 | 10.1016/j.jid.2020.10.025 | view | ||
| Lu | Gene | Single-cell profiles of human bone marrow-derived mesenchymal stromal cells after IFN-γ and TNF-α licensing. | 2020-12-14 | 10.1016/j.gene.2020.145347 | view | ||
| Wang | J Gastrointestin Liver Dis | Elevated TUBA1A Might Indicate the Clinical Outcomes of Patients with Gastric Cancer, Being Associated with the Infiltration of Macrophages in the Tumor Immune Microenvironment. | 2020-12-12 | 10.15403/jgld-2834 | view | ||
| Veenvliet | Science | Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites. | 2020-12-11 | 10.1126/science.aba4937 | view | ||
| Zheng | Nat Protoc | A microfluidics-based stem cell model of early post-implantation human development. | 2020-12-11 | 10.1038/s41596-020-00417-w | view | ||
| Osorio | Patterns (N Y) | scTenifoldNet: A Machine Learning Workflow for Constructing and Comparing Transcriptome-wide Gene Regulatory Networks from Single-Cell Data. | 2020-12-11 | 10.1016/j.patter.2020.100139 | view | ||
| Xi | Cell Syst | Benchmarking Computational Doublet-Detection Methods for Single-Cell RNA Sequencing Data. | 2020-12-11 | 10.1016/j.cels.2020.11.008 | view | ||
| Lui | Cell | Differential encoding in prefrontal cortex projection neuron classes across cognitive tasks. | 2020-12-11 | 10.1016/j.cell.2020.11.046 | view | ||
| Yu | Brief Bioinform | scGMAI: a Gaussian mixture model for clustering single-cell RNA-Seq data based on deep autoencoder. | 2020-12-10 | 10.1093/bib/bbaa316 | view | ||
| Pacocha | Anal Chem | High-Throughput Monitoring of Bacterial Cell Density in Nanoliter Droplets: Label-Free Detection of Unmodified Gram-Positive and Gram-Negative Bacteria. | 2020-12-10 | 10.1021/acs.analchem.0c03408 | view | ||
| Simon | Gigascience | DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data. | 2020-12-10 | 10.1093/gigascience/giaa122 | view | ||
| Wang | Mol Oncol | Circulating tumor cell detection and single-cell analysis using an integrated workflow based on ChimeraX® -i120 Platform: A prospective study. | 2020-12-10 | 10.1002/1878-0261.12876 | view | ||
| Zhou | J Hematol Oncol | Trajectory of chemical cocktail-induced neutrophil reprogramming. | 2020-12-10 | 10.1186/s13045-020-01008-8 | view | ||
| Lelliott | Cancer Immunol Res | Combined BRAF, MEK and CDK4/6 inhibition depletes intratumoral immune-potentiating myeloid populations in melanoma. | 2020-12-10 | 10.1158/2326-6066.CIR-20-0401 | view | ||
| Song | Nucleic Acids Res | Entropy subspace separation-based clustering for noise reduction (ENCORE) of scRNA-seq data. | 2020-12-10 | 10.1093/nar/gkaa1157 | view | ||
| Miura | Biochem Biophys Res Commun | Contribution of PDGFRα lineage cells in adult mouse hematopoiesis. | 2020-12-10 | 10.1016/j.bbrc.2020.11.114 | view | ||
| Varma | Curr Opin Organ Transplant | Dissecting the human kidney allograft transcriptome: single-cell RNA sequencing. | 2020-12-10 | 10.1097/MOT.0000000000000840 | view | ||
| Huang | Cell | Lymph nodes are innervated by a unique population of sensory neurons with immunomodulatory potential. | 2020-12-10 | 10.1016/j.cell.2020.11.028 | view | ||
| Ahlmann-Eltze | Bioinformatics | glmGamPoi: Fitting Gamma-Poisson Generalized Linear Models on Single Cell Count Data. | 2020-12-09 | 10.1093/bioinformatics/btaa1009 | view | ||
| Maschmeyer | Eur J Immunol | Antigen-driven PD-1+ TOX+ BHLHE40+ and PD-1+ TOX+ EOMES+ T lymphocytes regulate juvenile idiopathic arthritis in situ. | 2020-12-09 | 10.1002/eji.202048797 | view | ||
| Ciccolella | BMC Bioinformatics | gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data. | 2020-12-09 | 10.1186/s12859-020-03736-7 | view | ||
| Yap | Nature | Bidirectional perisomatic inhibitory plasticity of a Fos neuronal network. | 2020-12-09 | 10.1038/s41586-020-3031-0 | view | ||
| Huang | Cell Prolif | Single-cell RNA sequencing reveals heterogeneity and differential expression of decidual tissues during the peripartum period. | 2020-12-09 | 10.1111/cpr.12967 | view | ||
| Liu | J Allergy Clin Immunol | Single cell RNA-seq of psoriatic skin identifies pathogenic Tc17 subsets and reveals distinctions between CD8+ T cells in autoimmunity and cancer. | 2020-12-09 | 10.1016/j.jaci.2020.11.028 | view | ||
| Wang | Cell Stem Cell | Decoding Human Megakaryocyte Development. | 2020-12-09 | 10.1016/j.stem.2020.11.006 | view | ||
| Vans | Brief Bioinform | FEATS: feature selection-based clustering of single-cell RNA-seq data. | 2020-12-08 | 10.1093/bib/bbaa306 | view | ||
| Redente | JCI Insight | Loss of Fas-signaling in fibroblasts impairs homeostatic fibrosis resolution and promotes persistent pulmonary fibrosis. | 2020-12-08 | 10.1172/jci.insight.141618 | view | ||
| Konstantinides | Development | Neuronal differentiation strategies: insights from single-cell sequencing and machine learning. | 2020-12-08 | 10.1242/dev.193631 | view | ||
| Nishiwaki | mSystems | Short-Chain Fatty Acid-Producing Gut Microbiota Is Decreased in Parkinson's Disease but Not in Rapid-Eye-Movement Sleep Behavior Disorder. | 2020-12-08 | 10.1128/mSystems.00797-20 | view | ||
| Wang | Cell Rep | Cell-Type-Specific Gene Regulatory Networks Underlying Murine Neonatal Heart Regeneration at Single-Cell Resolution. | 2020-12-08 | 10.1016/j.celrep.2020.108472 | view | ||
| Song | Cell Discov | Global immune characterization of HBV/HCV-related hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression. | 2020-12-08 | 10.1038/s41421-020-00214-5 | view | ||
| Lidgerwood | Genomics Proteomics Bioinformatics | Transcriptomic Profiling of Human Pluripotent Stem Cell-derived Retinal Pigment Epithelium over Time. | 2020-12-08 | 10.1016/j.gpb.2020.08.002 | view | ||
| Zeng | Brief Bioinform | Coupled co-clustering-based unsupervised transfer learning for the integrative analysis of single-cell genomic data. | 2020-12-07 | 10.1093/bib/bbaa347 | view | ||
| Harsha Krovi | Nat Commun | Thymic iNKT single cell analyses unmask the common developmental program of mouse innate T cells. | 2020-12-07 | 10.1038/s41467-020-20073-8 | view | ||
| Stickels | Nat Biotechnol | Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2. | 2020-12-07 | 10.1038/s41587-020-0739-1 | view | ||
| Morarach | Nat Neurosci | Diversification of molecularly defined myenteric neuron classes revealed by single-cell RNA sequencing. | 2020-12-07 | 10.1038/s41593-020-00736-x | view | ||
| Andrews | Nat Protoc | Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data. | 2020-12-07 | 10.1038/s41596-020-00409-w | view | ||
| Lee | Exp Dermatol | Stem Cell Intrinsic Mechanisms Regulating Adult Hair Follicle Homeostasis. | 2020-12-05 | 10.1111/exd.14251 | view | ||
| Wang | J Allergy Clin Immunol | Treatment of granuloma annulare and suppression of proinflammatory cytokine activity with tofacitinib. | 2020-12-05 | 10.1016/j.jaci.2020.10.012 | view | ||
| Liu | Cereb Cortex | Prefrontal Granule Cell-Related Genes and Schizophrenia. | 2020-12-04 | 10.1093/cercor/bhaa360 | view | ||
| Johnsson | Clin Rheumatol | Synovial biopsies in clinical practice and research: current developments and perspectives. | 2020-12-04 | 10.1007/s10067-020-05512-7 | view | ||
| Harman | Stem Cell Res Ther | Single-cell RNA sequencing of equine mesenchymal stromal cells from primary donor-matched tissue sources reveals functional heterogeneity in immune modulation and cell motility. | 2020-12-04 | 10.1186/s13287-020-02043-5 | view | ||
| Schulert | Ann Rheum Dis | Monocyte and bone marrow macrophage transcriptional phenotypes in systemic juvenile idiopathic arthritis reveal TRIM8 as a mediator of IFN-γ hyper-responsiveness and risk for macrophage activation syndrome. | 2020-12-04 | 10.1136/annrheumdis-2020-217470 | view | ||
| Eum | Exp Mol Med | Tumor-promoting macrophages prevail in malignant ascites of advanced gastric cancer. | 2020-12-04 | 10.1038/s12276-020-00538-y | view | ||
| Stumpf | Commun Biol | Transfer learning efficiently maps bone marrow cell types from mouse to human using single-cell RNA sequencing. | 2020-12-04 | 10.1038/s42003-020-01463-6 | view | ||
| Gohil | Nat Rev Clin Oncol | Applying high-dimensional single-cell technologies to the analysis of cancer immunotherapy. | 2020-12-04 | 10.1038/s41571-020-00449-x | view | ||
| Peng | Cancers (Basel) | Single-Cell RNA Sequencing of a Postmenopausal Normal Breast Tissue Identifies Multiple Cell Types That Contribute to Breast Cancer. | 2020-12-04 | 10.3390/cancers12123639 | view | ||
| Ramaswamy | medRxiv | Post-infectious inflammatory disease in MIS-C features elevated cytotoxicity signatures and autoreactivity that correlates with severity. | 2020-12-04 | 10.1101/2020.12.01.20241364 | view | ||
| Kim | Cell | A Molecular Calcium Integrator Reveals a Striatal Cell Type Driving Aversion. | 2020-12-04 | 10.1016/j.cell.2020.11.015 | view | ||
| Yamazaki | Neuron | Vascular ApoE4 Impairs Behavior by Modulating Gliovascular Function. | 2020-12-04 | 10.1016/j.neuron.2020.11.019 | view | ||
| Winkels | Arterioscler Thromb Vasc Biol | Heterogeneity of T Cells in Atherosclerosis Defined by Single-Cell RNA-Sequencing and Cytometry by Time of Flight. | 2020-12-03 | 10.1161/ATVBAHA.120.312137 | view | ||
| Wang | Anal Chem | Single-Cell Sequencing-Enabled Hexokinase 2 Assay for Noninvasive Bladder Cancer Diagnosis and Screening by Detecting Rare Malignant Cells in Urine. | 2020-12-03 | 10.1021/acs.analchem.0c04282 | view | ||
| Patir | Sci Rep | Single-cell RNA-seq reveals CD16- monocytes as key regulators of human monocyte transcriptional response to Toxoplasma. | 2020-12-03 | 10.1038/s41598-020-78250-0 | view | ||
| Zhang | J Pineal Res | Melatonin improves the effect of cryopreservation on human oocytes by suppressing oxidative stress and maintaining the permeability of the oolemma. | 2020-12-03 | 10.1111/jpi.12707 | view | ||
| Kalinski | Elife | Analysis of the immune response to sciatic nerve injury identifies efferocytosis as a key mechanism of nerve debridement. | 2020-12-02 | 10.7554/eLife.60223 | view | ||
| Hahn | Nucleic Acids Res | CoolMPS for robust sequencing of single-nuclear RNAs captured by droplet-based method. | 2020-12-02 | 10.1093/nar/gkaa1127 | view | ||
| Govaere | Sci Transl Med | Transcriptomic profiling across the nonalcoholic fatty liver disease spectrum reveals gene signatures for steatohepatitis and fibrosis. | 2020-12-02 | 10.1126/scitranslmed.aba4448 | view | ||
| Lei | Int J Infect Dis | Single-cell RNA-Seq revealed profound immune alteration in the peripheral blood of patients with bacterial infection. | 2020-12-02 | 10.1016/j.ijid.2020.11.205 | view | ||
| Ni | Biochem Biophys Res Commun | Single-cell analysis reveals the purification and maturation effects of glucose starvation in hiPSC-CMs. | 2020-12-02 | 10.1016/j.bbrc.2020.11.076 | view | ||
| Xie | Front Immunol | The Expression Pattern and Clinical Significance of the Immune Checkpoint Regulator VISTA in Human Breast Cancer. | 2020-12-01 | 10.3389/fimmu.2020.563044 | view | ||
| Krstevski | Biochem Soc Trans | New perspectives of the cardiac cellular landscape: mapping cellular mediators of cardiac fibrosis using single-cell transcriptomics. | 2020-12-01 | 10.1042/BST20191255 | view | ||
| Fleischer | Front Physiol | Vascular Heterogeneity With a Special Focus on the Hepatic Microenvironment. | 2020-12-01 | 10.3389/fphys.2020.591901 | view | ||
| Wu | PLoS One | In silico immune infiltration profiling combined with functional enrichment analysis reveals a potential role for naïve B cells as a trigger for severe immune responses in the lungs of COVID-19 patients. | 2020-12-01 | 10.1371/journal.pone.0242900 | view | ||
| Gustafsson | PLoS One | DSAVE: Detection of misclassified cells in single-cell RNA-Seq data. | 2020-12-01 | 10.1371/journal.pone.0243360 | view | ||
| Soto | Reproduction | Similarities between bovine and human germline development revealed by single-cell RNAseq. | 2020-12-01 | 10.1530/REP-20-0313 | view | ||
| Elmentaite | Dev Cell | Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn's Disease. | 2020-12-01 | 10.1016/j.devcel.2020.11.010 | view | ||
| Zhu | Cell Discov | Characterization and generation of human definitive multipotent hematopoietic stem/progenitor cells. | 2020-12-01 | 10.1038/s41421-020-00213-6 | view | ||
| Dhillon | Cell Metab | The Nuclear Receptor ESRRA Protects from Kidney Disease by Coupling Metabolism and Differentiation. | 2020-12-01 | 10.1016/j.cmet.2020.11.011 | view | ||
| Yin | Adv Sci (Weinh) | Atlas of Musculoskeletal Stem Cells with the Soft and Hard Tissue Differentiation Architecture. | 2020-12-01 | 10.1002/advs.202000938 | view | ||
| Wu | Front Oncol | Single-Cell Sequencing of Glioblastoma Reveals Central Nervous System Susceptibility to SARS-CoV-2. | 2020-12-01 | 10.3389/fonc.2020.566599 | view | ||
| Sorokin | Front Immunol | Role of Vascular Smooth Muscle Cell Plasticity and Interactions in Vessel Wall Inflammation. | 2020-12-01 | 10.3389/fimmu.2020.599415 | view | ||
| Wan | Front Oncol | Discovery and Validation of a Metastasis-Related Prognostic and Diagnostic Biomarker for Melanoma Based on Single Cell and Gene Expression Datasets. | 2020-12-01 | 10.3389/fonc.2020.585980 | view | ||
| Kelkka | Front Immunol | Adult-Onset Anti-Citrullinated Peptide Antibody-Negative Destructive Rheumatoid Arthritis Is Characterized by a Disease-Specific CD8+ T Lymphocyte Signature. | 2020-12-01 | 10.3389/fimmu.2020.578848 | view | ||
| Chang | Front Immunol | Redox Regulator GLRX Is Associated With Tumor Immunity in Glioma. | 2020-12-01 | 10.3389/fimmu.2020.580934 | view | ||
| Smith | Front Immunol | A Conserved TCRβ Signature Dominates a Highly Polyclonal T-Cell Expansion During the Acute Phase of a Murine Malaria Infection. | 2020-12-01 | 10.3389/fimmu.2020.587756 | view | ||
| Guo | Front Genet | Applications of Single-Cell Omics to Dissect Tumor Microenvironment. | 2020-12-01 | 10.3389/fgene.2020.548719 | view | ||
| Wang | Front Genet | Integrative Analysis Extracts a Core ceRNA Network of the Fetal Hippocampus With Down Syndrome. | 2020-12-01 | 10.3389/fgene.2020.565955 | view | ||
| Zhu | Front Genet | EC-PGMGR: Ensemble Clustering Based on Probability Graphical Model With Graph Regularization for Single-Cell RNA-seq Data. | 2020-12-01 | 10.3389/fgene.2020.572242 | view | ||
| Pak | Front Cell Dev Biol | Analyses of Avascular Mutants Reveal Unique Transcriptomic Signature of Non-conventional Endothelial Cells. | 2020-12-01 | 10.3389/fcell.2020.589717 | view | ||
| Massalha | Mol Syst Biol | A single cell atlas of the human liver tumor microenvironment. | 2020-12-01 | 10.15252/msb.20209682 | view | ||
| Choo | Front Physiol | Boolean Feedforward Neural Network Modeling of Molecular Regulatory Networks for Cellular State Conversion. | 2020-12-01 | 10.3389/fphys.2020.594151 | view | ||
| Li | Front Cell Dev Biol | Exploring Additional Valuable Information From Single-Cell RNA-Seq Data. | 2020-12-01 | 10.3389/fcell.2020.593007 | view | ||
| Hu | NAR Genom Bioinform | SIMPLEs: a single-cell RNA sequencing imputation strategy preserving gene modules and cell clusters variation. | 2020-12-01 | 10.1093/nargab/lqaa077 | view | ||
| Thibivilliers | Curr Protoc Plant Biol | Isolation of Plant Root Nuclei for Single Cell RNA Sequencing. | 2020-12-01 | 10.1002/cppb.20120 | view | ||
| Davis | Hypertension | Downregulation of M Current Is Coupled to Membrane Excitability in Sympathetic Neurons Before the Onset of Hypertension. | 2020-12-01 | 10.1161/HYPERTENSIONAHA.120.15922 | view | ||
| Dharmat | Methods Mol. Biol. | Single-Cell Capture, RNA-seq, and Transcriptome Analysis from the Neural Retina. | 2020-12-01 | 10.1007/978-1-0716-0175-4_12 | view | ||
| Tsyvina | PLoS Comput Biol | Inference of mutability landscapes of tumors from single cell sequencing data. | 2020-11-30 | 10.1371/journal.pcbi.1008454 | view | ||
| Godot | PLoS Pathog | TLR-9 agonist and CD40-targeting vaccination induces HIV-1 envelope-specific B cells with a diversified immunoglobulin repertoire in humanized mice. | 2020-11-30 | 10.1371/journal.ppat.1009025 | view | ||
| Bharat | Sci Transl Med | Lung transplantation for patients with severe COVID-19. | 2020-11-30 | 10.1126/scitranslmed.abe4282 | view | ||
| Olah | Nat Commun | Single cell RNA sequencing of human microglia uncovers a subset associated with Alzheimer's disease. | 2020-11-30 | 10.1038/s41467-020-19737-2 | view | ||
| Crowell | Nat Commun | muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data. | 2020-11-30 | 10.1038/s41467-020-19894-4 | view | ||
| Velazquez | Cell Syst | Gene Regulatory Network Analysis and Engineering Directs Development and Vascularization of Multilineage Human Liver Organoids. | 2020-11-30 | 10.1016/j.cels.2020.11.002 | view | ||
| Svensson | Database (Oxford) | A curated database reveals trends in single-cell transcriptomics. | 2020-11-28 | 10.1093/database/baaa073 | view | ||
| Jin | Science | In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes. | 2020-11-27 | 10.1126/science.aaz6063 | view | ||
| Teschendorff | Bioinformatics | Ultra-fast scalable estimation of single-cell differentiation potency from scRNA-Seq data. | 2020-11-27 | 10.1093/bioinformatics/btaa987 | view | ||
| Xu | J Cachexia Sarcopenia Muscle | Single-cell RNA sequencing and lipidomics reveal cell and lipid dynamics of fat infiltration in skeletal muscle. | 2020-11-27 | 10.1002/jcsm.12643 | view | ||
| Dabouz | J Neuroinflammation | An allosteric interleukin-1 receptor modulator mitigates inflammation and photoreceptor toxicity in a model of retinal degeneration. | 2020-11-27 | 10.1186/s12974-020-02032-8 | view | ||
| Perally | Int J Parasitol | Schistosoma mansoni venom allergen-like protein 6 (SmVAL6) maintains tegumental barrier function. | 2020-11-27 | 10.1016/j.ijpara.2020.09.004 | view | ||
| Pak | Biochem Biophys Res Commun | Pax9 is essential for granulopoiesis but dispensable for erythropoiesis in zebrafish. | 2020-11-27 | 10.1016/j.bbrc.2020.11.077 | view | ||
| Kanagaki | Stem Cells | Directed induction of alveolar type I cells derived from pluripotent stem cells via Wnt signaling inhibition. | 2020-11-26 | 10.1002/stem.3302 | view | ||
| Cha | Exp Mol Med | Single-cell network biology for resolving cellular heterogeneity in human diseases. | 2020-11-26 | 10.1038/s12276-020-00528-0 | view | ||
| Carter | Nat Rev Genet | The epigenetic basis of cellular heterogeneity. | 2020-11-26 | 10.1038/s41576-020-00300-0 | view | ||
| Sheerin | medRxiv | Systematic evaluation of transcriptomic disease risk and diagnostic biomarker overlap between COVID-19 and tuberculosis: a patient-level meta-analysis. | 2020-11-26 | 10.1101/2020.11.25.20236646 | view | ||
| Zhao | Clin Rev Allergy Immunol | The Application of Single-Cell RNA Sequencing in Studies of Autoimmune Diseases: a Comprehensive Review. | 2020-11-25 | 10.1007/s12016-020-08813-6 | view | ||
| Phan | Exp Dermatol | Single-cell transcriptomic analysis of small and large wounds reveals the distinct spatial organization of regenerative fibroblasts. | 2020-11-25 | 10.1111/exd.14244 | view | ||
| Hinze | J Am Soc Nephrol | Kidney Single-cell Transcriptomes Predict Spatial Corticomedullary Gene Expression and Tissue Osmolality Gradients. | 2020-11-25 | 10.1681/ASN.2020070930 | view | ||
| Dobreva | Sci Rep | Single cell profiling of capillary blood enables out of clinic human immunity studies. | 2020-11-25 | 10.1038/s41598-020-77073-3 | view | ||
| Crinier | Cell Mol Immunol | Single-cell profiling reveals the trajectories of natural killer cell differentiation in bone marrow and a stress signature induced by acute myeloid leukemia. | 2020-11-25 | 10.1038/s41423-020-00574-8 | view | ||
| Ren | Biomark Res | Alternative Polyadenylation: a new frontier in post transcriptional regulation. | 2020-11-25 | 10.1186/s40364-020-00249-6 | view | ||
| Miczán | Cereb Cortex | NECAB1 and NECAB2 are Prevalent Calcium-Binding Proteins of CB1/CCK-Positive GABAergic Interneurons. | 2020-11-24 | 10.1093/cercor/bhaa326 | view | ||
| Vihani | Elife | Semiochemical responsive olfactory sensory neurons are sexually dimorphic and plastic. | 2020-11-24 | 10.7554/eLife.54501 | view | ||
| Ashton | J Crohns Colitis | Ileal transcriptomic analysis in paediatric Crohn's disease reveals IL17- and NOD-signalling expression signatures in treatment-naïve patients and identifies epithelial cells driving differentially expressed genes. | 2020-11-24 | 10.1093/ecco-jcc/jjaa236 | view | ||
| Schmidt | BMC Biol | Deconvolution of cellular subsets in human tissue based on targeted DNA methylation analysis at individual CpG sites. | 2020-11-24 | 10.1186/s12915-020-00910-4 | view | ||
| Pellegrini | Cytotherapy | Transcriptional dynamics of induced pluripotent stem cell differentiation into β cells reveals full endodermal commitment and homology with human islets. | 2020-11-24 | 10.1016/j.jcyt.2020.10.004 | view | ||
| Aldaz | Int J Mol Sci | WWOX Loss of Function in Neurodevelopmental and Neurodegenerative Disorders. | 2020-11-24 | 10.3390/ijms21238922 | view | ||
| Bahrami | Bioinformatics | Deep feature extraction of single-cell transcriptomes by generative adversarial network. | 2020-11-23 | 10.1093/bioinformatics/btaa976 | view | ||
| Kamata | Stem Cells Transl Med | A robust culture system to generate neural progenitors with gliogenic competence from clinically relevant induced pluripotent stem cells for treatment of spinal cord injury. | 2020-11-23 | 10.1002/sctm.20-0269 | view | ||
| Wells | Elife | Combined transient ablation and single cell RNA sequencing reveals the development of medullary thymic epithelial cells. | 2020-11-23 | 10.7554/eLife.60188 | view | ||
| Zhang | Aging (Albany NY) | Single cell sequencing reveals cell populations that predict primary resistance to imatinib in chronic myeloid leukemia. | 2020-11-23 | 10.18632/aging.104136 | view | ||
| Anand | Blood | Single cell RNA-seq reveals developmental plasticity with coexisting oncogenic and immune evasion programs in ETP-ALL. | 2020-11-23 | 10.1182/blood.2019004547 | view | ||
| Xie | Proc Natl Acad Sci U S A | High-resolution mouse subventricular zone stem-cell niche transcriptome reveals features of lineage, anatomy, and aging. | 2020-11-23 | 10.1073/pnas.2014389117 | view | ||
| Moncada | Nat Biotechnol | Author Correction: Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas. | 2020-11-23 | 10.1038/s41587-020-00776-5 | view | ||
| Haltalli | Nat Cell Biol | Manipulating niche composition limits damage to haematopoietic stem cells during Plasmodium infection. | 2020-11-23 | 10.1038/s41556-020-00601-w | view | ||
| Sullivan | J Neurochem | Elucidating memory in the brain via single-cell transcriptomics. | 2020-11-23 | 10.1111/jnc.15250 | view | ||
| Zou | Dev Cell | A Single-Cell Transcriptomic Atlas of Human Skin Aging. | 2020-11-23 | 10.1016/j.devcel.2020.11.002 | view | ||
| Nichols | Hum Genet | The relationship between the gut microbiome and host gene expression: a review. | 2020-11-22 | 10.1007/s00439-020-02237-0 | view | ||
| Gao | Nucleic Acids Res | Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data. | 2020-11-21 | 10.1093/nar/gkaa1006 | view | ||
| Hoersting | Curr Opin Neurobiol | Axonal branch patterning and neuronal shape diversity: roles in developmental circuit assembly: Axonal branch patterning and neuronal shape diversity in developmental circuit assembly. | 2020-11-21 | 10.1016/j.conb.2020.10.019 | view | ||
| Song | Aging (Albany NY) | Expression profiles revealed potential kidney injury caused by SARS-CoV-2: a systematic analysis of ACE2 and clinical lessons learned from this discovery. | 2020-11-21 | 10.18632/aging.202224 | view | ||
| Malkani | Cell Rep | Circulating miRNA Spaceflight Signature Reveals Targets for Countermeasure Development. | 2020-11-21 | 10.1016/j.celrep.2020.108448 | view | ||
| Johnson | Phys Biol | Integrating transcriptomics and bulk time course data into a mathematical framework to describe and predict therapeutic resistance in cancer. | 2020-11-20 | 10.1088/1478-3975/abb09c | view | ||
| Martin Carli | J Mammary Gland Biol Neoplasia | Single Cell RNA Sequencing of Human Milk-Derived Cells Reveals Sub-Populations of Mammary Epithelial Cells with Molecular Signatures of Progenitor and Mature States: a Novel, Non-invasive Framework for Investigating Human Lactation Physiology. | 2020-11-20 | 10.1007/s10911-020-09466-z | view | ||
| Sountoulidis | PLoS Biol | SCRINSHOT enables spatial mapping of cell states in tissue sections with single-cell resolution. | 2020-11-20 | 10.1371/journal.pbio.3000675 | view | ||
| Nicolai | J Thromb Haemost | Vascular neutrophilic inflammation and immunothrombosis distinguish severe COVID-19 from influenza pneumonia. | 2020-11-20 | 10.1111/jth.15179 | view | ||
| Mehtonen | Genome Med | Single cell characterization of B-lymphoid differentiation and leukemic cell states during chemotherapy in ETV6-RUNX1-positive pediatric leukemia identifies drug-targetable transcription factor activities. | 2020-11-20 | 10.1186/s13073-020-00799-2 | view | ||
| Hilfenhaus | Cancer Res | A high-content screen identifies drugs that restrict tumor cell extravasation across the endothelial barrier. | 2020-11-20 | 10.1158/0008-5472.CAN-19-3911 | view | ||
| Shi | Proteomics | A Microfluidic Chip for Efficient Circulating Tumor Cells Enrichment, Screening and Single-cell RNA Sequencing. | 2020-11-20 | 10.1002/pmic.202000060 | view | ||
| Ratneswaran | Osteoarthritis Cartilage | Year In Review: Genetics, Genomics, Epigenetics. | 2020-11-20 | 10.1016/j.joca.2020.11.003 | view | ||
| Jiang | iScience | scREAD: A Single-Cell RNA-Seq Database for Alzheimer's Disease. | 2020-11-20 | 10.1016/j.isci.2020.101769 | view | ||
| Sadeqi Azer | iScience | Tumor Phylogeny Topology Inference via Deep Learning. | 2020-11-20 | 10.1016/j.isci.2020.101655 | view | ||
| Walesky | Nat Commun | Functional compensation precedes recovery of tissue mass following acute liver injury. | 2020-11-19 | 10.1038/s41467-020-19558-3 | view | ||
| Dwyer | J Hepatol | TWEAK/Fn14 signalling promotes cholangiocarcinoma niche formation and progression. | 2020-11-19 | 10.1016/j.jhep.2020.11.018 | view | ||
| Chi | Transl Oncol | A `one-two punch' therapy strategy to target chemoresistance in estrogen receptor positive breast cancer. | 2020-11-19 | 10.1016/j.tranon.2020.100946 | view | ||
| Peng | Int Immunopharmacol | LncRNA MIAT correlates with immune infiltrates and drug reactions in hepatocellular carcinoma. | 2020-11-19 | 10.1016/j.intimp.2020.107071 | view | ||
| Mustachio | Cancers (Basel) | Opportunities for Single-Cell Sequencing Technologies and Data Science. | 2020-11-19 | 10.3390/cancers12113433 | view | ||
| Montagna | Br J Anaesth | Intraoperative opioids are associated with improved recurrence-free survival in triple-negative breast cancer. | 2020-11-18 | 10.1016/j.bja.2020.10.021 | view | ||
| Zhang | Aging (Albany NY) | Alteration of tumor-associated macrophage subtypes mediated by KRT6A in pancreatic ductal adenocarcinoma. | 2020-11-18 | 10.18632/aging.104091 | view | ||
| Li | Comput Biol Chem | ScGSLC: An unsupervised graph similarity learning framework for single-cell RNA-seq data clustering. | 2020-11-18 | 10.1016/j.compbiolchem.2020.107415 | view | ||
| Räsänen | Circulation | VEGF-B Promotes Endocardium-Derived Coronary Vessel Development and Cardiac Regeneration. | 2020-11-18 | 10.1161/CIRCULATIONAHA.120.050635 | view | ||
| Mižíková | Am J Physiol Lung Cell Mol Physiol | Looking at the Developing Lung in Single-cell Resolution. | 2020-11-18 | 10.1152/ajplung.00385.2020 | view | ||
| Minn | Elife | High-resolution transcriptional and morphogenetic profiling of cells from micropatterned human ESC gastruloid cultures. | 2020-11-18 | 10.7554/eLife.59445 | view | ||
| Jeon | BMC Genomics | Bivalent genes that undergo transcriptional switching identify networks of key regulators of embryonic stem cell differentiation. | 2020-11-18 | 10.1186/s12864-020-07009-8 | view | ||
| Feng | BMC Genomics | I-Impute: a self-consistent method to impute single cell RNA sequencing data. | 2020-11-18 | 10.1186/s12864-020-07007-w | view | ||
| Strobl | Sci Transl Med | Long-term skin-resident memory T cells proliferate in situ and are involved in human graft-versus-host disease. | 2020-11-18 | 10.1126/scitranslmed.abb7028 | view | ||
| Wieland | Nature | Defining HPV-specific B cell responses in patients with head and neck cancer. | 2020-11-18 | 10.1038/s41586-020-2931-3 | view | ||
| Travaglini | Nature | A molecular cell atlas of the human lung from single-cell RNA sequencing. | 2020-11-18 | 10.1038/s41586-020-2922-4 | view | ||
| Han | Brief Bioinform | Are dropout imputation methods for scRNA-seq effective for scHi-C data? | 2020-11-17 | 10.1093/bib/bbaa289 | view | ||
| Sun | Nat Commun | Ensemble dimensionality reduction and feature gene extraction for single-cell RNA-seq data. | 2020-11-17 | 10.1038/s41467-020-19465-7 | view | ||
| Rexach | Cell Rep | Tau Pathology Drives Dementia Risk-Associated Gene Networks toward Chronic Inflammatory States and Immunosuppression. | 2020-11-17 | 10.1016/j.celrep.2020.108398 | view | ||
| Chen | Res Sq | SARS-CoV-2 Infected Cardiomyocytes Recruit Monocytes by Secreting CCL2. | 2020-11-17 | 10.21203/rs.3.rs-94634/v1 | view | ||
| Gao | Cell Rep Med | Osteopontin Links Myeloid Activation and Disease Progression in Systemic Sclerosis. | 2020-11-17 | 10.1016/j.xcrm.2020.100140 | view | ||
| Bonser | Am J Respir Cell Mol Biol | Flow Cytometric Analysis and Purification of Airway Epithelial Cell Subsets. | 2020-11-16 | 10.1165/rcmb.2020-0149MA | view | ||
| Yang | FASEB J | Characterization of sheep spermatogenesis through single-cell RNA sequencing. | 2020-11-16 | 10.1096/fj.202001035RRR | view | ||
| Bargagna-Mohan | J Neurosci Res | Corneal nonmyelinating Schwann cells illuminated by single-cell transcriptomics and visualized by protein biomarkers. | 2020-11-16 | 10.1002/jnr.24757 | view | ||
| Li | BMC Cancer | Analyses of metastasis-associated genes in IDH wild-type glioma. | 2020-11-16 | 10.1186/s12885-020-07628-0 | view | ||
| Probst | Development | Spatiotemporal sequence of mesoderm and endoderm lineage segregation during mouse gastrulation. | 2020-11-16 | 10.1242/dev.193789 | view | ||
| Tosti | Gastroenterology | Single nucleus and in situ RNA sequencing reveals cell topographies in the human pancreas. | 2020-11-16 | 10.1053/j.gastro.2020.11.010 | view | ||
| Watson | Development | Mammary development in the embryo and adult: new insights into the journey of morphogenesis and commitment. | 2020-11-15 | 10.1242/dev.169862 | view | ||
| Moorman | Cancers (Basel) | Osteopontin: A Key Regulator of Tumor Progression and Immunomodulation. | 2020-11-15 | 10.3390/cancers12113379 | view | ||
| Zhou | Evolving insights: how DNA repair pathways impact cancer evolution. | 2020-11-15 | 10.20892/j.issn.2095-3941.2020.0177 | view | |||
| Droho | J Neuroinflammation | Ocular macrophage origin and heterogeneity during steady state and experimental choroidal neovascularization. | 2020-11-13 | 10.1186/s12974-020-02010-0 | view | ||
| Ding | Sci Rep | Characterisation of CD4+ T-cell subtypes using single cell RNA sequencing and the impact of cell number and sequencing depth. | 2020-11-13 | 10.1038/s41598-020-76972-9 | view | ||
| Füllgrabe | Nat Biotechnol | Guidelines for reporting single-cell RNA-seq experiments. | 2020-11-13 | 10.1038/s41587-020-00744-z | view | ||
| Naganuma | Dev Biol | Molecular detection of maturation stages in the developing kidney. | 2020-11-13 | 10.1016/j.ydbio.2020.11.002 | view | ||
| Kusmartseva | Cell Metab | Expression of SARS-CoV-2 Entry Factors in the Pancreas of Normal Organ Donors and Individuals with COVID-19. | 2020-11-13 | 10.1016/j.cmet.2020.11.005 | view | ||
| Jung | Brief Bioinform | FunRes: resolving tissue-specific functional cell states based on a cell-cell communication network model. | 2020-11-12 | 10.1093/bib/bbaa283 | view | ||
| Santoso | Nucleic Acids Res | Comprehensive mapping of the human cytokine gene regulatory network. | 2020-11-12 | 10.1093/nar/gkaa1055 | view | ||
| Sun | Nucleic Acids Res | TISCH: a comprehensive web resource enabling interactive single-cell transcriptome visualization of tumor microenvironment. | 2020-11-12 | 10.1093/nar/gkaa1020 | view | ||
| Schuler | J Clin Invest | Age-determined expression of priming protease TMPRSS2 and localization of SARS-CoV-2 in lung epithelium. | 2020-11-12 | 10.1172/JCI140766 | view | ||
| Sarangi | BMC Bioinformatics | SCELLECTOR: ranking amplification bias in single cells using shallow sequencing. | 2020-11-12 | 10.1186/s12859-020-03858-y | view | ||
| Infarinato | Genes Dev | BMP signaling: at the gate between activated melanocyte stem cells and differentiation. | 2020-11-12 | 10.1101/gad.340281.120 | view | ||
| Deng | Sci Rep | Single-cell RNA sequencing confirms IgG transcription and limited diversity of VHDJH rearrangements in proximal tubular epithelial cells. | 2020-11-12 | 10.1038/s41598-020-75013-9 | view | ||
| Scala | Nature | Phenotypic variation of transcriptomic cell types in mouse motor cortex. | 2020-11-12 | 10.1038/s41586-020-2907-3 | view | ||
| Gürsoy | Cell | Data Sanitization to Reduce Private Information Leakage from Functional Genomics. | 2020-11-12 | 10.1016/j.cell.2020.09.036 | view | ||
| Gokuldass | Cancers (Basel) | Qualitative Analysis of Tumor-Infiltrating Lymphocytes across Human Tumor Types Reveals a Higher Proportion of Bystander CD8+ T Cells in Non-Melanoma Cancers Compared to Melanoma. | 2020-11-12 | 10.3390/cancers12113344 | view | ||
| Niu | Viruses | Methamphetamine Increases the Proportion of SIV-Infected Microglia/Macrophages, Alters Metabolic Pathways, and Elevates Cell Death Pathways: A Single-Cell Analysis. | 2020-11-12 | 10.3390/v12111297 | view | ||
| Albert | Neuro Oncol | An extracellular vesicle-related gene expression signature identifies high-risk patients in medulloblastoma. | 2020-11-11 | 10.1093/neuonc/noaa254 | view | ||
| Kuppe | Nature | Decoding myofibroblast origins in human kidney fibrosis. | 2020-11-11 | 10.1038/s41586-020-2941-1 | view | ||
| Xu | Stem Cells Dev | Sharing and Helping: Regularity and Characteristics of Pathogenesis of a Widely Used Transgene Initiated Murine Acute Promyelocytic Leukemia Model. | 2020-11-11 | 10.1089/scd.2020.0125 | view | ||
| Lamanna | Nat Commun | Digital microfluidic isolation of single cells for -Omics. | 2020-11-11 | 10.1038/s41467-020-19394-5 | view | ||
| An | Gigascience | D-EE: Distributed software for visualizing intrinsic structure of large-scale single-cell data. | 2020-11-11 | 10.1093/gigascience/giaa126 | view | ||
| Horie | Cells | Integrated Single-Cell RNA-Sequencing Analysis of Aquaporin 5-Expressing Mouse Lung Epithelial Cells Identifies GPRC5A as a Novel Validated Type I Cell Surface Marker. | 2020-11-11 | 10.3390/cells9112460 | view | ||
| Zhao | BMC Res Notes | Comprehensive analysis of single-cell RNA sequencing data from healthy human marrow hematopoietic cells. | 2020-11-10 | 10.1186/s13104-020-05357-y | view | ||
| Kim | Nucleic Acids Res | TENET: gene network reconstruction using transfer entropy reveals key regulatory factors from single cell transcriptomic data. | 2020-11-10 | 10.1093/nar/gkaa1014 | view | ||
| Aruketty | Biochem Soc Trans | Spatio-temporal regulation of gene expression defines subpopulations of epidermal stem cells. | 2020-11-10 | 10.1042/BST20200740 | view | ||
| Yu | Sci Rep | Gene-regulatory network analysis of ankylosing spondylitis with a single-cell chromatin accessible assay. | 2020-11-10 | 10.1038/s41598-020-76574-5 | view | ||
| Liu | Sci Rep | Integrating single-cell RNA-seq and imaging with SCOPE-seq2. | 2020-11-10 | 10.1038/s41598-020-76599-w | view | ||
| Shen | Sci Rep | Unveiling the heterogeneity of NKT cells in the liver through single cell RNA sequencing. | 2020-11-10 | 10.1038/s41598-020-76659-1 | view | ||
| Wu | Sci Rep | Fate and functional roles of Prominin 1+ cells in liver injury and cancer. | 2020-11-10 | 10.1038/s41598-020-76458-8 | view | ||
| Rodriguez-Romaguera | Cell Rep | Prepronociceptin-Expressing Neurons in the Extended Amygdala Encode and Promote Rapid Arousal Responses to Motivationally Salient Stimuli. | 2020-11-10 | 10.1016/j.celrep.2020.108362 | view | ||
| Leavitt | Cell Rep | Prrx1 Fibroblasts Represent a Pro-fibrotic Lineage in the Mouse Ventral Dermis. | 2020-11-10 | 10.1016/j.celrep.2020.108356 | view | ||
| Novotný | Cancers (Basel) | Single-Cell RNA Sequencing Unravels Heterogeneity of the Stromal Niche in Cutaneous Melanoma Heterogeneous Spheroids. | 2020-11-10 | 10.3390/cancers12113324 | view | ||
| Dai | Biomark Res | Research and application of single-cell sequencing in tumor heterogeneity and drug resistance of circulating tumor cells. | 2020-11-10 | 10.1186/s40364-020-00240-1 | view | ||
| Tang | Bioinformatics | Evaluating Single-Cell Cluster Stability Using The Jaccard Similarity Index. | 2020-11-09 | 10.1093/bioinformatics/btaa956 | view | ||
| Mirizio | Arthritis Res Ther | Single-cell transcriptome conservation in a comparative analysis of fresh and cryopreserved human skin tissue: pilot in localized scleroderma. | 2020-11-09 | 10.1186/s13075-020-02343-4 | view | ||
| Hwang | Nat Commun | Reconstitution of prospermatogonial specification in vitro from human induced pluripotent stem cells. | 2020-11-09 | 10.1038/s41467-020-19350-3 | view | ||
| Garvin | J Mol Cell Cardiol | Fibroblast shifts in the hypertensive heart: How single cell RNA-sequencing will accelerate advancements in anti-fibrotic therapies. | 2020-11-09 | 10.1016/j.yjmcc.2020.11.001 | view | ||
| Winnubst | Curr Opin Neurobiol | Linking axon morphology to gene expression: a strategy for neuronal cell-type classification. | 2020-11-09 | 10.1016/j.conb.2020.10.006 | view | ||
| Gao | Protein Cell | Single-cell transcriptomics of cardiac progenitors reveals functional subpopulations and their cooperative crosstalk in cardiac repair. | 2020-11-07 | 10.1007/s13238-020-00788-6 | view | ||
| Jackson | Vet Immunol Immunopathol | Analysis of canine myeloid-derived suppressor cells (MDSCs) utilizing fluorescence-activated cell sorting, RNA protection mediums to yield quality RNA for single-cell RNA sequencing. | 2020-11-07 | 10.1016/j.vetimm.2020.110144 | view | ||
| Abplanalp | Circ Res | Clonal Hematopoiesis-Driver DNMT3A Mutations Alter Immune Cells in Heart Failure. | 2020-11-06 | 10.1161/CIRCRESAHA.120.317104 | view | ||
| Wan | Cancer Res | Enhanced efficacy of simultaneous PD-1 and PD-L1 immune checkpoint blockade in high grade serous ovarian cancer. | 2020-11-06 | 10.1158/0008-5472.CAN-20-1674 | view | ||
| Avila Cobos | Nat Commun | Benchmarking of cell type deconvolution pipelines for transcriptomics data. | 2020-11-06 | 10.1038/s41467-020-19015-1 | view | ||
| Rust | Nat Commun | A single-cell atlas and lineage analysis of the adult Drosophila ovary. | 2020-11-06 | 10.1038/s41467-020-19361-0 | view | ||
| Obraztsova | Nat Commun | mTORC1 activation in lung mesenchyme drives sex- and age-dependent pulmonary structure and function decline. | 2020-11-06 | 10.1038/s41467-020-18979-4 | view | ||
| Castro-Dopico | Curr Opin Pharmacol | Targeting B cells for inflammatory bowel disease treatment: back to the future. | 2020-11-06 | 10.1016/j.coph.2020.10.002 | view | ||
| Yamada | Int J Mol Sci | Review of Single-Cell RNA Sequencing in the Heart. | 2020-11-06 | 10.3390/ijms21218345 | view | ||
| Smolander | Bioinformatics | ILoReg: a tool for high-resolution cell population identification from single-cell RNA-seq data. | 2020-11-05 | 10.1093/bioinformatics/btaa919 | view | ||
| Fang | Nucleic Acids Res | GRNdb: decoding the gene regulatory networks in diverse human and mouse conditions. | 2020-11-05 | 10.1093/nar/gkaa995 | view | ||
| Figueres-Oñate | Cell Mol Life Sci | Deciphering neural heterogeneity through cell lineage tracing. | 2020-11-05 | 10.1007/s00018-020-03689-3 | view | ||
| Sehgal | J Clin Invest | Dynamic single-cell RNA sequencing identifies immunotherapy persister cells following PD-1 blockade. | 2020-11-05 | 10.1172/JCI135038 | view | ||
| Lu | Biol Sex Differ | Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types. | 2020-11-05 | 10.1186/s13293-020-00335-2 | view | ||
| Rondeau | Microbiol Resour Announc | Widespread Traces of Lytic Kaposi Sarcoma-Associated Herpesvirus in Primary Effusion Lymphoma at Single-Cell Resolution. | 2020-11-05 | 10.1128/MRA.00851-20 | view | ||
| Anderson | Sci Rep | The bone marrow microenvironment of pre-B acute lymphoblastic leukemia at single-cell resolution. | 2020-11-05 | 10.1038/s41598-020-76157-4 | view | ||
| Keaveney | J Neurosci | CamKIIα Positive Interneurons Identified via A microRNA Based Viral Gene Targeting Strategy. | 2020-11-05 | 10.1523/JNEUROSCI.2570-19.2020 | view | ||
| Frumm | Cell Stem Cell | A Hierarchy of Proliferative and Migratory Keratinocytes Maintains the Tympanic Membrane. | 2020-11-05 | 10.1016/j.stem.2020.10.006 | view | ||
| Tseng | Handb Exp Pharmacol | Molecular Genetics of Kappa Opioids in Pain and Itch Sensations. | 2020-11-04 | 10.1007/164_2020_397 | view | ||
| Li | J Cell Mol Med | Optimized Langendorff perfusion system for cardiomyocyte isolation in adult mouse heart. | 2020-11-04 | 10.1111/jcmm.15773 | view | ||
| Shao | Brief Bioinform | CellTalkDB: a manually curated database of ligand-receptor interactions in humans and mice. | 2020-11-04 | 10.1093/bib/bbaa269 | view | ||
| Chen | Cancer Res | Single-cell transcriptomic heterogeneity in invasive ductal and lobular breast cancer cells. | 2020-11-04 | 10.1158/0008-5472.CAN-20-0696 | view | ||
| Aggen | Clin Cancer Res | Blocking Interleukin-1 Beta Promotes Tumor Regression and Remodeling of the Myeloid Compartment in a Renal Cell Carcinoma Model: Multi-Dimensional Analyses. | 2020-11-04 | 10.1158/1078-0432.CCR-20-1610 | view | ||
| Andreev | Ann Rheum Dis | Regulatory eosinophils induce the resolution of experimental arthritis and appear in remission state of human rheumatoid arthritis. | 2020-11-04 | 10.1136/annrheumdis-2020-218902 | view | ||
| Marti-Solano | Nature | Combinatorial expression of GPCR isoforms affects signalling and drug responses. | 2020-11-04 | 10.1038/s41586-020-2888-2 | view | ||
| Ni | Kidney Int | Targeting fibroblast growth factor 23-responsive pathways uncovers controlling genes in kidney mineral metabolism. | 2020-11-04 | 10.1016/j.kint.2020.10.024 | view | ||
| Imdahl | Curr Opin Microbiol | Advances and challenges in single-cell RNA-seq of microbial communities. | 2020-11-04 | 10.1016/j.mib.2020.10.001 | view | ||
| von Buchholtz | Neuron | Decoding Cellular Mechanisms for Mechanosensory Discrimination. | 2020-11-04 | 10.1016/j.neuron.2020.10.028 | view | ||
| Orsenigo | Elife | Mapping endothelial-cell diversity in cerebral cavernous malformations at single-cell resolution. | 2020-11-03 | 10.7554/eLife.61413 | view | ||
| Bell | J Comp Neurol | Characterization of mWake expression in the murine brain. | 2020-11-03 | 10.1002/cne.25066 | view | ||
| Wu | Brief Bioinform | scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data. | 2020-11-03 | 10.1093/bib/bbaa273 | view | ||
| Choi | Genome Biol | Publisher Correction: Bayesian model selection reveals biological origins of zero inflation in single-cell transcriptomics. | 2020-11-03 | 10.1186/s13059-020-02182-1 | view | ||
| Mu | Commun Biol | Embryonic liver developmental trajectory revealed by single-cell RNA sequencing in the Foxa2eGFP mouse. | 2020-11-03 | 10.1038/s42003-020-01364-8 | view | ||
| He | Oncogene | Single-cell RNA sequencing reveals heterogeneous tumor and immune cell populations in early-stage lung adenocarcinomas harboring EGFR mutations. | 2020-11-03 | 10.1038/s41388-020-01528-0 | view | ||
| Ludikhuize | Cell Metab | Mitochondria Define Intestinal Stem Cell Differentiation Downstream of a FOXO/Notch Axis. | 2020-11-03 | 10.1016/j.cmet.2020.10.005 | view | ||
| Kalinina | J Invest Dermatol | The whey acidic protein WFDC12 is specifically expressed in terminally differentiated keratinocytes and regulates epidermal serine-protease activity. | 2020-11-03 | 10.1016/j.jid.2020.09.025 | view | ||
| Guan | Sci China Life Sci | Single-cell transcriptomics of murine mural cells reveals cellular heterogeneity. | 2020-11-03 | 10.1007/s11427-020-1823-2 | view | ||
| Kakebeen | Dev Dyn | Tissue disaggregation and isolation of specific cell types from transgenic Xenopus appendages for transcriptional analysis by FACS. | 2020-11-02 | 10.1002/dvdy.268 | view | ||
| Klimm | BMC Genomics | Functional module detection through integration of single-cell RNA sequencing data with protein-protein interaction networks. | 2020-11-02 | 10.1186/s12864-020-07144-2 | view | ||
| Sun | Sci Rep | Single-cell RNA profiling links ncRNAs to spatiotemporal gene expression during C. elegans embryogenesis. | 2020-11-02 | 10.1038/s41598-020-75801-3 | view | ||
| Islam | Nat Biomed Eng | A data-driven dimensionality-reduction algorithm for the exploration of patterns in biomedical data. | 2020-11-02 | 10.1038/s41551-020-00635-3 | view | ||
| Baharom | Nat Immunol | Intravenous nanoparticle vaccination generates stem-like TCF1+ neoantigen-specific CD8+ T cells. | 2020-11-02 | 10.1038/s41590-020-00810-3 | view | ||
| Levy | Nat Metab | Age-related loss of gene-to-gene transcriptional coordination among single cells. | 2020-11-02 | 10.1038/s42255-020-00304-4 | view | ||
| Shaw | Mol Plant | Single-Cell Transcriptome Analysis in Plants: Advances and Challenges. | 2020-11-02 | 10.1016/j.molp.2020.10.012 | view | ||
| Wu | Trends Pharmacol Sci | Single-Cell Techniques and Deep Learning in Predicting Drug Response. | 2020-11-02 | 10.1016/j.tips.2020.10.004 | view | ||
| Kotliar | Cell | Single-Cell Profiling of Ebola Virus Disease In Vivo Reveals Viral and Host Dynamics. | 2020-11-02 | 10.1016/j.cell.2020.10.002 | view | ||
| Urrutia-Cabrera | Neural Regen Res | Using single cell transcriptomics to study the complexity of human retina. | 2020-11-01 | 10.4103/1673-5374.282253 | view | ||
| Leir | Life Sci Alliance | An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR. | 2020-11-01 | 10.26508/lsa.202000744 | view | ||
| Møller | Life Sci Alliance | Predicting gene regulatory networks from cell atlases. | 2020-11-01 | 10.26508/lsa.202000658 | view | ||
| Tanevski | Life Sci Alliance | Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data. | 2020-11-01 | 10.26508/lsa.202000867 | view | ||
| Beaumont | Application of Single-Cell Sequencing to Immunotherapy. | 2020-11-01 | 10.1016/j.ucl.2020.07.005 | view | |||
| Tšuiko | Reproduction | PREIMPLANTATION GENETIC TESTING: Single-cell technologies at the forefront of PGT and embryo research. | 2020-11-01 | 10.1530/REP-20-0102 | view | ||
| Kinker | Nat Genet | Pan-cancer single-cell RNA-seq identifies recurring programs of cellular heterogeneity. | 2020-11-01 | 10.1038/s41588-020-00726-6 | view | ||
| Ungaro | Aliment Pharmacol Ther | Machine learning identifies novel blood protein predictors of penetrating and stricturing complications in newly diagnosed paediatric Crohn's disease. | 2020-11-01 | 10.1111/apt.16136 | view | ||
| Zhai | Front Immunol | Single-Cell RNA-Sequencing Shift in the Interaction Pattern Between Glioma Stem Cells and Immune Cells During Tumorigenesis. | 2020-11-01 | 10.3389/fimmu.2020.581209 | view | ||
| Choi | Front Genet | A Systems Biology Approach to Identifying a Master Regulator That Can Transform the Fast Growing Cellular State to a Slowly Growing One in Early Colorectal Cancer Development Model. | 2020-11-01 | 10.3389/fgene.2020.570546 | view | ||
| Khatri | Front Genet | A Transcriptomics-Based Meta-Analysis Combined With Machine Learning Identifies a Secretory Biomarker Panel for Diagnosis of Pancreatic Adenocarcinoma. | 2020-11-01 | 10.3389/fgene.2020.572284 | view | ||
| Huang | Front Genet | Reconstructing the Developmental Trajectories of Multiple Subtypes in Pulmonary Parenchymal Epithelial Cells by Single-Cell RNA-seq. | 2020-11-01 | 10.3389/fgene.2020.573429 | view | ||
| Gupta | CNS Neurol Disord Drug Targets | Neuroblastoma and stem cell therapy - An updated review. | 2020-11-01 | 10.2174/1871527319666201102100911 | view | ||
| Li | NPJ Precis Oncol | The identification and functional analysis of CD8+PD-1+CD161+ T cells in hepatocellular carcinoma. | 2020-11-01 | 10.1038/s41698-020-00133-4 | view | ||
| Zhang | Sci Adv | A single-cell analysis of the molecular lineage of chordate embryogenesis. | 2020-11-01 | 10.1126/sciadv.abc4773 | view | ||
| Guslund | Front Immunol | Single-Cell Transcriptome Profiling of Immune Cell Repertoire of the Atlantic Cod Which Naturally Lacks the Major Histocompatibility Class II System. | 2020-11-01 | 10.3389/fimmu.2020.559555 | view | ||
| Li | Sci Adv | Transcriptional priming as a conserved mechanism of lineage diversification in the developing mouse and human neocortex. | 2020-11-01 | 10.1126/sciadv.abd2068 | view | ||
| Pan | Int J Biol Sci | Identification of a novel cancer stem cell subpopulation that promotes progression of human fatal renal cell carcinoma by single-cell RNA-seq analysis. | 2020-11-01 | 10.7150/ijbs.46645 | view | ||
| Kidman | Front Immunol | Characteristics of TCR Repertoire Associated With Successful Immune Checkpoint Therapy Responses. | 2020-11-01 | 10.3389/fimmu.2020.587014 | view | ||
| Gui | Front Genet | Pituitary Tumor Transforming Gene 1 Orchestrates Gene Regulatory Variation in Mouse Ventral Midbrain During Aging. | 2020-11-01 | 10.3389/fgene.2020.566734 | view | ||
| Gao | Adv Sci (Weinh) | CD63+ Cancer-Associated Fibroblasts Confer Tamoxifen Resistance to Breast Cancer Cells through Exosomal miR-22. | 2020-11-01 | 10.1002/advs.202002518 | view | ||
| Ren | Infect Drug Resist | Multiple Expression Assessments of ACE2 and TMPRSS2 SARS-CoV-2 Entry Molecules in the Urinary Tract and Their Associations with Clinical Manifestations of COVID-19. | 2020-11-01 | 10.2147/IDR.S270543 | view | ||
| Jang | Front Neurosci | Current Status of Stem Cell-Derived Therapies for Parkinson's Disease: From Cell Assessment and Imaging Modalities to Clinical Trials. | 2020-11-01 | 10.3389/fnins.2020.558532 | view | ||
| Helle | Front Physiol | Flow-Induced Transcriptomic Remodeling of Endothelial Cells Derived From Human Induced Pluripotent Stem Cells. | 2020-11-01 | 10.3389/fphys.2020.591450 | view | ||
| Liu | Front Microbiol | Differential Expression of Viral Transcripts From Single-Cell RNA Sequencing of Moderate and Severe COVID-19 Patients and Its Implications for Case Severity. | 2020-11-01 | 10.3389/fmicb.2020.603509 | view | ||
| Kalfaoglu | Front Immunol | T-Cell Hyperactivation and Paralysis in Severe COVID-19 Infection Revealed by Single-Cell Analysis. | 2020-11-01 | 10.3389/fimmu.2020.589380 | view | ||
| Alsema | Front Mol Neurosci | Profiling Microglia From Alzheimer's Disease Donors and Non-demented Elderly in Acute Human Postmortem Cortical Tissue. | 2020-11-01 | 10.3389/fnmol.2020.00134 | view | ||
| Tsuboi | Front Mol Neurosci | LRR-Containing Oncofetal Trophoblast Glycoprotein 5T4 Shapes Neural Circuits in Olfactory and Visual Systems. | 2020-11-01 | 10.3389/fnmol.2020.581018 | view | ||
| Forsell | Front Neuroanat | BrainWiki-A Wiki-Style, User Driven, Comparative Brain Anatomy Tool. | 2020-11-01 | 10.3389/fnana.2020.548172 | view | ||
| Huang | Front Immunol | Identification of Immune Cell Infiltration and Immune-Related Genes in the Tumor Microenvironment of Glioblastomas. | 2020-11-01 | 10.3389/fimmu.2020.585034 | view | ||
| Xiong | Front Genet | NeuralEE: A GPU-Accelerated Elastic Embedding Dimensionality Reduction Method for Visualizing Large-Scale scRNA-Seq Data. | 2020-11-01 | 10.3389/fgene.2020.00786 | view | ||
| Lozoya | Front Genet | Patterns, Profiles, and Parsimony: Dissecting Transcriptional Signatures From Minimal Single-Cell RNA-Seq Output With SALSA. | 2020-11-01 | 10.3389/fgene.2020.511286 | view | ||
| Zeng | Front Genet | Stemness Related Genes Revealed by Network Analysis Associated With Tumor Immune Microenvironment and the Clinical Outcome in Lung Adenocarcinoma. | 2020-11-01 | 10.3389/fgene.2020.549213 | view | ||
| Ostasov | Front Oncol | Evolution of Advanced Chronic Lymphoid Leukemia Unveiled by Single-Cell Transcriptomics: A Case Report. | 2020-11-01 | 10.3389/fonc.2020.584607 | view | ||
| Vermeiren | Front Cell Dev Biol | Vertebrate Sensory Ganglia: Common and Divergent Features of the Transcriptional Programs Generating Their Functional Specialization. | 2020-11-01 | 10.3389/fcell.2020.587699 | view | ||
| Gan | Front Cell Dev Biol | Identification of Differential Gene Groups From Single-Cell Transcriptomes Using Network Entropy. | 2020-11-01 | 10.3389/fcell.2020.588041 | view | ||
| Kwon | Front Cell Dev Biol | Intestinal Morphogenesis in Development, Regeneration, and Disease: The Potential Utility of Intestinal Organoids for Studying Compartmentalization of the Crypt-Villus Structure. | 2020-11-01 | 10.3389/fcell.2020.593969 | view | ||
| Wang | Front Cell Dev Biol | Expression Patterns of Claudin Family Members During Tooth Development and the Role of Claudin-10 (Cldn10) in Cytodifferentiation of Stratum Intermedium. | 2020-11-01 | 10.3389/fcell.2020.595593 | view | ||
| Li | Biomed Res Int | Autophagy Regulatory Genes MET and RIPK2 Play a Prognostic Role in Pancreatic Ductal Adenocarcinoma: A Bioinformatic Analysis Based on GEO and TCGA. | 2020-11-01 | 10.1155/2020/8537381 | view | ||
| Younes | PLoS One | In silico analysis identifies a putative cell-of-origin for BRAF fusion-positive cerebellar pilocytic astrocytoma. | 2020-11-01 | 10.1371/journal.pone.0242521 | view | ||
| Zhang | Comput Struct Biotechnol J | Benchmarking algorithms for pathway activity transformation of single-cell RNA-seq data. | 2020-11-01 | 10.1016/j.csbj.2020.10.007 | view | ||
| Zhang | Front Oncol | Single-Cell RNA-Seq Analysis Reveals Microenvironmental Infiltration of Plasma Cells and Hepatocytic Prognostic Markers in HCC With Cirrhosis. | 2020-11-01 | 10.3389/fonc.2020.596318 | view | ||
| Zia | Front Immunol | Microglia Diversity in Health and Multiple Sclerosis. | 2020-11-01 | 10.3389/fimmu.2020.588021 | view | ||
| Zhou | PLoS Biol | A network medicine approach to investigation and population-based validation of disease manifestations and drug repurposing for COVID-19. | 2020-11-01 | 10.1371/journal.pbio.3000970 | view | ||
| Li | BMC Genomics | Identification of diverse cell populations in skeletal muscles and biomarkers for intramuscular fat of chicken by single-cell RNA sequencing. | 2020-10-31 | 10.1186/s12864-020-07136-2 | view | ||
| Sumida | bioRxiv | Type I Interferon Transcriptional Network Regulates Expression of Coinhibitory Receptors in Human T cells. | 2020-10-31 | 10.1101/2020.10.30.362947 | view | ||
| Huang | Int J Mol Sci | Single-Cell Analysis of Different Stages of Oral Cancer Carcinogenesis in a Mouse Model. | 2020-10-31 | 10.3390/ijms21218171 | view | ||
| Kumar | Cell Cycle | Single-cell analysis of copy-number alterations in serous ovarian cancer reveals substantial heterogeneity in both low- and high-grade tumors. | 2020-10-30 | 10.1080/15384101.2020.1836439 | view | ||
| Behjati Ardakani | Gigascience | Prediction of single-cell gene expression for transcription factor analysis. | 2020-10-30 | 10.1093/gigascience/giaa113 | view | ||
| Leung | Reprod Sci | Recent Advances in Understandings Towards Pathogenesis and Treatment for Intrauterine Adhesion and Disruptive Insights from Single-Cell Analysis. | 2020-10-30 | 10.1007/s43032-020-00343-y | view | ||
| Ding | Sci Immunol | Persistent STAT5 activation reprograms the epigenetic landscape in CD4+ T cells to drive polyfunctionality and antitumor immunity. | 2020-10-30 | 10.1126/sciimmunol.aba5962 | view | ||
| Mandric | Nat Commun | Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis. | 2020-10-30 | 10.1038/s41467-020-19365-w | view | ||
| Mickelsen | Elife | Cellular taxonomy and spatial organization of the murine ventral posterior hypothalamus. | 2020-10-29 | 10.7554/eLife.58901 | view | ||
| Linker | Genome Res | Identification of bona fide B2 SINE retrotransposon transcription through single-nucleus RNA-seq of the mouse hippocampus. | 2020-10-29 | 10.1101/gr.262196.120 | view | ||
| Jo | Sci Rep | Functional in vivo and in vitro effects of 20q11.21 genetic aberrations on hPSC differentiation. | 2020-10-29 | 10.1038/s41598-020-75657-7 | view | ||
| Lotto | Cell | Single-Cell Transcriptomics Reveals Early Emergence of Liver Parenchymal and Non-parenchymal Cell Lineages. | 2020-10-29 | 10.1016/j.cell.2020.09.012 | view | ||
| Dewi | Exp Eye Res | A simplified method for producing human lens epithelial cells and light-focusing micro-lenses from pluripotent stem cells. | 2020-10-29 | 10.1016/j.exer.2020.108317 | view | ||
| Hannemann | Joint Bone Spine | New Insights into Macrophage Heterogeneity in Rheumatoid Arthritis. | 2020-10-29 | 10.1016/j.jbspin.2020.105091 | view | ||
| Zhang | Mol Ther | Reshaping the Immune Microenvironment by Oncolytic Herpes Simplex Virus in Murine Pancreatic Ductal Adenocarcinoma. | 2020-10-29 | 10.1016/j.ymthe.2020.10.027 | view | ||
| Stegmayr | Am J Physiol Lung Cell Mol Physiol | Isolation of high yield and quality RNA from human precision-cut lung slices for RNA-sequencing and computational integration with larger patient cohorts. | 2020-10-28 | 10.1152/ajplung.00401.2020 | view | ||
| Rudman-Melnick | J Am Soc Nephrol | Single-Cell Profiling of AKI in a Murine Model Reveals Novel Transcriptional Signatures, Profibrotic Phenotype, and Epithelial-to-Stromal Crosstalk. | 2020-10-28 | 10.1681/ASN.2020010052 | view | ||
| Tarbier | Nat Commun | Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells. | 2020-10-28 | 10.1038/s41467-020-19011-5 | view | ||
| Lin | Nat Commun | Murine interfollicular epidermal differentiation is gradualistic with GRHL3 controlling progression from stem to transition cell states. | 2020-10-28 | 10.1038/s41467-020-19234-6 | view | ||
| Qin | Cell Death Differ | Single-cell RNA-seq reveals novel mitochondria-related musculoskeletal cell populations during adult axolotl limb regeneration process. | 2020-10-28 | 10.1038/s41418-020-00640-8 | view | ||
| Prakash | Methods Protoc | Cell Dissociation from Butterfly Pupal Wing Tissues for Single-Cell RNA Sequencing. | 2020-10-28 | 10.3390/mps3040072 | view | ||
| Zaman | Curr Opin Immunol | Exploring cardiac macrophage heterogeneity in the healthy and diseased myocardium. | 2020-10-28 | 10.1016/j.coi.2020.09.005 | view | ||
| McDonald | Cell | Defining the Teratoma as a Model for Multi-lineage Human Development. | 2020-10-28 | 10.1016/j.cell.2020.10.018 | view | ||
| Jiang | Antioxid Redox Signal | Different Roles of Stem/progenitor Cells in Vascular Remodelling. | 2020-10-27 | 10.1089/ars.2020.8199 | view | ||
| Gao | J Oral Pathol Med | CKS2 modulates cell cycle progression of tongue squamous cell carcinoma (TSCC) cells partly via modulating the cellular distribution of DUTPase. | 2020-10-27 | 10.1111/jop.13116 | view | ||
| Alavi | PLoS Comput Biol | Iterative point set registration for aligning scRNA-seq data. | 2020-10-27 | 10.1371/journal.pcbi.1007939 | view | ||
| Jain | Placenta | PlacentaCellEnrich: A tool to characterize gene sets using placenta cell-specific gene enrichment analysis. | 2020-10-27 | 10.1016/j.placenta.2020.10.029 | view | ||
| Huang | medRxiv | Integrated Single-Cell Atlases Reveal an Oral SARS-CoV-2 Infection and Transmission Axis. | 2020-10-27 | 10.1101/2020.10.26.20219089 | view | ||
| Bharat | medRxiv | Lung transplantation for pulmonary fibrosis secondary to severe COVID-19. | 2020-10-27 | 10.1101/2020.10.26.20218636 | view | ||
| Park | Am J Physiol Endocrinol Metab | Holistic Characterization of Single Hepatocyte Transcriptome Responses to High Fat Diet. | 2020-10-26 | 10.1152/ajpendo.00391.2020 | view | ||
| Chan | Genome Biol | RNA editing in cancer impacts mRNA abundance in immune response pathways. | 2020-10-26 | 10.1186/s13059-020-02171-4 | view | ||
| Li | Cell Res | Single-cell patterning and axis characterization in the murine and human definitive endoderm. | 2020-10-26 | 10.1038/s41422-020-00426-0 | view | ||
| Mattei | Int J Mol Sci | Enzymatic Dissociation Induces Transcriptional and Proteotype Bias in Brain Cell Populations. | 2020-10-26 | 10.3390/ijms21217944 | view | ||
| Ste-Croix | Phytopathology | Genomic profiling of virulence in the soybean cyst nematode using single-nematode sequencing. | 2020-10-25 | 10.1094/PHYTO-08-20-0348-FI | view | ||
| Chen | Bioinformatics | Single-cell RNA-seq data semi-supervised clustering and annotation via structural regularized domain adaptation. | 2020-10-24 | 10.1093/bioinformatics/btaa908 | view | ||
| Daniloski | Cell | Identification of Required Host Factors for SARS-CoV-2 Infection in Human Cells. | 2020-10-24 | 10.1016/j.cell.2020.10.030 | view | ||
| Trampert | J Hepatol | Hepatobiliary acid-base homeostasis: Insights from analogous secretory epithelia. | 2020-10-24 | 10.1016/j.jhep.2020.10.010 | view | ||
| Fabian | Science | Lineage analysis reveals an endodermal contribution to the vertebrate pituitary. | 2020-10-23 | 10.1126/science.aba4767 | view | ||
| Vargo | BMC Bioinformatics | A rank-based marker selection method for high throughput scRNA-seq data. | 2020-10-23 | 10.1186/s12859-020-03641-z | view | ||
| Tang | Development | Neural crest lineage analysis: from past to future trajectory. | 2020-10-23 | 10.1242/dev.193193 | view | ||
| Rasouli | Sci Immunol | A distinct GM-CSF+ T helper cell subset requires T-bet to adopt a TH1 phenotype and promote neuroinflammation. | 2020-10-23 | 10.1126/sciimmunol.aba9953 | view | ||
| McQuade | Nat Commun | Gene expression and functional deficits underlie TREM2-knockout microglia responses in human models of Alzheimer's disease. | 2020-10-23 | 10.1038/s41467-020-19227-5 | view | ||
| Csordás | Dev Biol | There and back again: The mechanisms of differentiation and transdifferentiation in Drosophila blood cells. | 2020-10-23 | 10.1016/j.ydbio.2020.10.006 | view | ||
| Ferrero | Trends Cell Biol | Toward a Consensus View of Mammalian Adipocyte Stem and Progenitor Cell Heterogeneity. | 2020-10-23 | 10.1016/j.tcb.2020.09.007 | view | ||
| Liu | iScience | Single-Cell Profiling Reveals Divergent, Globally Patterned Immune Responses in Murine Skin Inflammation. | 2020-10-23 | 10.1016/j.isci.2020.101582 | view | ||
| Xu | Arterioscler Thromb Vasc Biol | Cell-Type Transcriptome Atlas of Human Aortic Valves Reveal Cell Heterogeneity and Endothelial to Mesenchymal Transition Involved in Calcific Aortic Valve Disease. | 2020-10-22 | 10.1161/ATVBAHA.120.314789 | view | ||
| Chen | Cancer Res | Tumor fibroblast-derived FGF2 regulates expression of SPRY1 in esophageal tumor-infiltrating T cells and plays a role in T cell exhaustion. | 2020-10-22 | 10.1158/0008-5472.CAN-20-1542 | view | ||
| Johnson | Sci Rep | Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing. | 2020-10-22 | 10.1038/s41598-020-74917-w | view | ||
| Gu | Sci Rep | Characterization of rare spindle and root cell transcriptional profiles in the stria vascularis of the adult mouse cochlea. | 2020-10-22 | 10.1038/s41598-020-75238-8 | view | ||
| Zhao | Cell Prolif | Single-cell analysis identified lung progenitor cells in COVID-19 patients. | 2020-10-22 | 10.1111/cpr.12931 | view | ||
| Yamamoto | Dev Biol | In silico analysis of inner ear development using public whole embryonic body single-cell RNA-sequencing data. | 2020-10-22 | 10.1016/j.ydbio.2020.10.009 | view | ||
| Taurin | Neoplasia | Breast cancers, mammary stem cells, and cancer stem cells, characteristics, and hypotheses. | 2020-10-22 | 10.1016/j.neo.2020.09.009 | view | ||
| Kubick | Immun Inflamm Dis | What has single-cell RNA sequencing revealed about microglial neuroimmunology? | 2020-10-21 | 10.1002/iid3.362 | view | ||
| Kalra | FEBS J | Challenges and possible solutions for decoding extranasal olfactory receptors. | 2020-10-21 | 10.1111/febs.15606 | view | ||
| Fang | Curr Opin Pediatr | Obesity and immune status in children. | 2020-10-21 | 10.1097/MOP.0000000000000953 | view | ||
| Luo | Comput Struct Biotechnol J | Probing infectious disease by single-cell RNA sequencing: progresses and perspectives. | 2020-10-21 | 10.1016/j.csbj.2020.10.016 | view | ||
| Kurmangaliyev | Neuron | Transcriptional Programs of Circuit Assembly in the Drosophila Visual System. | 2020-10-21 | 10.1016/j.neuron.2020.10.006 | view | ||
| Hamey | Allergy | Single-cell molecular profiling provides a high-resolution map of basophil and mast cell development. | 2020-10-20 | 10.1111/all.14633 | view | ||
| Tekman | Gigascience | A single-cell RNA-sequencing training and analysis suite using the Galaxy framework. | 2020-10-20 | 10.1093/gigascience/giaa102 | view | ||
| Zhang | Glia | Cell populations in neonatal rat peripheral nerves identified by single-cell transcriptomics. | 2020-10-20 | 10.1002/glia.23928 | view | ||
| Mould | Am J Respir Crit Care Med | Airspace Macrophages and Monocytes Exist in Transcriptionally Distinct Subsets in Healthy Adults. | 2020-10-20 | 10.1164/rccm.202005-1989OC | view | ||
| Pariser | J Clin Invest | Lung megakaryocytes are immune modulatory cells. | 2020-10-20 | 10.1172/JCI137377 | view | ||
| Uddin | ACS Chem Biol | Visualizing HIF-1α mRNA in a Subpopulation of Bone Marrow-Derived Cells to Predict Retinal Neovascularization. | 2020-10-20 | 10.1021/acschembio.0c00662 | view | ||
| Swanson | Acta Neuropathol Commun | Identification of a dysfunctional microglial population in human Alzheimer's disease cortex using novel single-cell histology image analysis. | 2020-10-20 | 10.1186/s40478-020-01047-9 | view | ||
| Pervolarakis | Cell Rep | Integrated Single-Cell Transcriptomics and Chromatin Accessibility Analysis Reveals Regulators of Mammary Epithelial Cell Identity. | 2020-10-20 | 10.1016/j.celrep.2020.108273 | view | ||
| Coate | bioRxiv | SARS-CoV-2 Cell Entry Factors ACE2 and TMPRSS2 are Expressed in the Pancreas but are Not Enriched in Islet Endocrine Cells. | 2020-10-20 | 10.1101/2020.08.31.275719 | view | ||
| Bui | bioRxiv | Single-cell RNA-sequencing reveals dysregulation of molecular programs associated with SARS-CoV-2 severity and outcomes in patients with chronic lung disease. | 2020-10-20 | 10.1101/2020.10.20.347187 | view | ||
| Cambien | PLoS Pathog | Identification of oncolytic vaccinia restriction factors in canine high-grade mammary tumor cells using single-cell transcriptomics. | 2020-10-19 | 10.1371/journal.ppat.1008660 | view | ||
| Zhang | Nat Commun | Single-cell transcriptomics identifies divergent developmental lineage trajectories during human pituitary development. | 2020-10-19 | 10.1038/s41467-020-19012-4 | view | ||
| Rodriques | Nat Biotechnol | RNA timestamps identify the age of single molecules in RNA sequencing. | 2020-10-19 | 10.1038/s41587-020-0704-z | view | ||
| Brbić | Nat Methods | MARS: discovering novel cell types across heterogeneous single-cell experiments. | 2020-10-19 | 10.1038/s41592-020-00979-3 | view | ||
| Amann-Zalcenstein | Nat Immunol | A new lymphoid-primed progenitor marked by Dach1 downregulation identified with single cell multi-omics. | 2020-10-19 | 10.1038/s41590-020-0799-x | view | ||
| Kapitansky | Cells | Single Cell ADNP Predictive of Human Muscle Disorders: Mouse Knockdown Results in Muscle Wasting. | 2020-10-19 | 10.3390/cells9102320 | view | ||
| Fiege | bioRxiv | Single cell resolution of SARS-CoV-2 tropism, antiviral responses, and susceptibility to therapies in primary human airway epithelium. | 2020-10-19 | 10.1101/2020.10.19.343954 | view | ||
| Li | Oncoimmunology | Single-cell analysis reveals immune modulation and metabolic switch in tumor-draining lymph nodes. | 2020-10-19 | 10.1080/2162402X.2020.1830513 | view | ||
| Yang | J Leukoc Biol | Single-cell transcriptomics uncover distinct innate and adaptive cell subsets during tissue homeostasis and regeneration. | 2020-10-18 | 10.1002/JLB.6MR0720-131R | view | ||
| Lam | J Am Heart Assoc | Single-Cell Transcriptomics of Engineered Cardiac Tissues From Patient-Specific Induced Pluripotent Stem Cell-Derived Cardiomyocytes Reveals Abnormal Developmental Trajectory and Intrinsic Contractile Defects in Hypoplastic Right Heart Syndrome. | 2020-10-16 | 10.1161/JAHA.120.016528 | view | ||
| Wu | Cardiovasc Res | Angiogenesis After Acute Myocardial Infarction. | 2020-10-16 | 10.1093/cvr/cvaa287 | view | ||
| Schmidt | Genes (Basel) | Developmental scRNAseq Trajectories in Gene- and Cell-State Space-The Flatworm Example. | 2020-10-16 | 10.3390/genes11101214 | view | ||
| Bulut | Arterioscler Thromb Vasc Biol | KLF4 (Kruppel-Like Factor 4)-Dependent Perivascular Plasticity Contributes to Adipose Tissue inflammation. | 2020-10-15 | 10.1161/ATVBAHA.120.314703 | view | ||
| Borst | Brain Pathol | Deciphering the heterogeneity of myeloid cells during neuroinflammation in the single cell era. | 2020-10-15 | 10.1111/bpa.12910 | view | ||
| Fernández-Zapata | Brain Pathol | The use and limitations of single-cell mass cytometry for studying human microglia function. | 2020-10-15 | 10.1111/bpa.12909 | view | ||
| Tomar | J Allergy Clin Immunol | IL-4-BATF signaling directly modulates IL-9 producing mucosal mast cell (MMC9) function in experimental food allergy. | 2020-10-15 | 10.1016/j.jaci.2020.08.043 | view | ||
| Kang | Nat Biotechnol | Author Correction: Multiplexed droplet single-cell RNA-sequencing using natural genetic variation. | 2020-10-14 | 10.1038/s41587-020-0715-9 | view | ||
| Pool | Nature | The cellular basis of distinct thirst modalities. | 2020-10-14 | 10.1038/s41586-020-2821-8 | view | ||
| Song | Nature | Cell-type-specific 3D epigenomes in the developing human cortex. | 2020-10-14 | 10.1038/s41586-020-2825-4 | view | ||
| Kim | Korean J Intern Med | Single-cell transcriptomics: a new research technique for precision medicine in nephrology. | 2020-10-14 | 10.3904/kjim.2020.415 | view | ||
| Caruso | Gigascience | A map of tumor-host interactions in glioma at single-cell resolution. | 2020-10-14 | 10.1093/gigascience/giaa109 | view | ||
| Panico | Cardiovasc Res | Defining circulating mononuclear cells in heart failure through single-cell RNA sequencing: new insights for an old disease. | 2020-10-13 | 10.1093/cvr/cvaa156 | view | ||
| Hughes | Immunity | Second-Strand Synthesis-Based Massively Parallel scRNA-Seq Reveals Cellular States and Molecular Features of Human Inflammatory Skin Pathologies. | 2020-10-13 | 10.1016/j.immuni.2020.09.015 | view | ||
| Fernandes | Cell Rep | Single-Cell Transcriptomics of Parkinson's Disease Human In Vitro Models Reveals Dopamine Neuron-Specific Stress Responses. | 2020-10-13 | 10.1016/j.celrep.2020.108263 | view | ||
| Cooney | Genome Biol Evol | Single cell transcriptomics of ABEDINIUM reveals a new early-branching dinoflagellate lineage. | 2020-10-12 | 10.1093/gbe/evaa196 | view | ||
| Galletti | Nat Immunol | Two subsets of stem-like CD8+ memory T cell progenitors with distinct fate commitments in humans. | 2020-10-12 | 10.1038/s41590-020-0791-5 | view | ||
| Soon | Nat Immunol | Transcriptome dynamics of CD4+ T cells during malaria maps gradual transit from effector to memory. | 2020-10-12 | 10.1038/s41590-020-0800-8 | view | ||
| Liu | Nat Protoc | Jointly defining cell types from multiple single-cell datasets using LIGER. | 2020-10-12 | 10.1038/s41596-020-0391-8 | view | ||
| Wang | Int J Hematol | Transcriptional heterogeneity of clonal plasma cells and immune evasion in immunoglobulin light chain amyloidosis. | 2020-10-10 | 10.1007/s12185-020-03016-3 | view | ||
| Hie | Cell Syst | Leveraging Uncertainty in Machine Learning Accelerates Biological Discovery and Design. | 2020-10-10 | 10.1016/j.cels.2020.09.007 | view | ||
| Aschenbrenner | Gut | Deconvolution of monocyte responses in inflammatory bowel disease reveals an IL-1 cytokine network that regulates IL-23 in genetic and acquired IL-10 resistance. | 2020-10-09 | 10.1136/gutjnl-2020-321731 | view | ||
| Sage | Sci Rep | Assessment of long non-coding RNA expression reveals novel mediators of the lung tumour immune response. | 2020-10-09 | 10.1038/s41598-020-73787-6 | view | ||
| Chattopadhyay | Arterioscler Thromb Vasc Biol | Cholesterol-Induced Phenotypic Modulation of Smooth Muscle Cells to Macrophage/Fibroblast-like Cells Is Driven by an Unfolded Protein Response. | 2020-10-08 | 10.1161/ATVBAHA.120.315164 | view | ||
| Xu | Curr Osteoporos Rep | The Effects of Calcitonin Gene-Related Peptide on Bone Homeostasis and Regeneration. | 2020-10-08 | 10.1007/s11914-020-00624-0 | view | ||
| Summers | PLoS Biol | Network analysis of transcriptomic diversity amongst resident tissue macrophages and dendritic cells in the mouse mononuclear phagocyte system. | 2020-10-08 | 10.1371/journal.pbio.3000859 | view | ||
| Ma | Mol Cancer | Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing. | 2020-10-08 | 10.1186/s12943-020-01264-9 | view | ||
| Di Campli | Eur Respir J | The mononuclear phagocyte system contributes to fibrosis in post-transplant Obliterans Bronchiolitis. | 2020-10-08 | 10.1183/13993003.00344-2020 | view | ||
| Yao | Nat Commun | AP-1 and TGFß cooperativity drives non-canonical Hedgehog signaling in resistant basal cell carcinoma. | 2020-10-08 | 10.1038/s41467-020-18762-5 | view | ||
| Chen | Nat Commun | Single-cell RNA sequencing highlights the role of inflammatory cancer-associated fibroblasts in bladder urothelial carcinoma. | 2020-10-08 | 10.1038/s41467-020-18916-5 | view | ||
| Xiong | Nat Commun | A gene expression signature of TREM2hi macrophages and γδ T cells predicts immunotherapy response. | 2020-10-08 | 10.1038/s41467-020-18546-x | view | ||
| Shinozawa | Gastroenterology | High-Fidelity Drug Induced Liver Injury Screen Using Human PSC-derived Organoids. | 2020-10-08 | 10.1053/j.gastro.2020.10.002 | view | ||
| Li | J Allergy Clin Immunol | Single Cell Transcriptomic Analysis Reveals Key Immune Cell Phenotypes in the lung of Asthma Exacerbation. | 2020-10-08 | 10.1016/j.jaci.2020.09.032 | view | ||
| Xu | Methods | Ensemble learning models that predict surface protein abundance from single-cell multimodal omics data. | 2020-10-08 | 10.1016/j.ymeth.2020.10.001 | view | ||
| Ribeiro | Stem Cells Transl Med | TransSynW: A single-cell RNA-sequencing based web application to guide cell conversion experiments. | 2020-10-08 | 10.1002/sctm.20-0227 | view | ||
| Mevel | Elife | RUNX1 marks a luminal castration resistant lineage established at the onset of prostate development. | 2020-10-07 | 10.7554/eLife.60225 | view | ||
| Wang | IEEE/ACM Trans Comput Biol Bioinform | Single-cell RNA Sequencing Data Clustering by Low-Rank Subspace Ensemble Framework. | 2020-10-07 | 10.1109/TCBB.2020.3029187 | view | ||
| Wang | BMC Bioinformatics | Impact of data preprocessing on cell-type clustering based on single-cell RNA-seq data. | 2020-10-07 | 10.1186/s12859-020-03797-8 | view | ||
| Kok | Oncogenesis | Overexpression of Cyclin E1 or Cdc25A leads to replication stress, mitotic aberrancies, and increased sensitivity to replication checkpoint inhibitors. | 2020-10-07 | 10.1038/s41389-020-00270-2 | view | ||
| Li | Nature | Microglia-organized scar-free spinal cord repair in neonatal mice. | 2020-10-07 | 10.1038/s41586-020-2795-6 | view | ||
| Kobayashi | J Autoimmun | Integrated bulk and single-cell RNA-sequencing identified disease-relevant monocytes and a gene network module underlying systemic sclerosis. | 2020-10-07 | 10.1016/j.jaut.2020.102547 | view | ||
| Li | Circulation | Single-Cell Transcriptome Analysis Reveals Dynamic Cell Populations and Differential Gene Expression Patterns in Control and Aneurysmal Human Aortic Tissue. | 2020-10-06 | 10.1161/CIRCULATIONAHA.120.046528 | view | ||
| Hong | Am J Respir Crit Care Med | Single-cell Study of Two Rat Models of Pulmonary Arterial Hypertension Reveals Connections to Human Pathobiology and Drug Repositioning. | 2020-10-06 | 10.1164/rccm.202006-2169OC | view | ||
| Zhu | Cell Death Dis | Mesenchymal stem cells alleviate LPS-induced acute lung injury by inhibiting the proinflammatory function of Ly6C+ CD8+ T cells. | 2020-10-06 | 10.1038/s41419-020-03036-1 | view | ||
| Hou | Nat Commun | Predicting cell-to-cell communication networks using NATMI. | 2020-10-06 | 10.1038/s41467-020-18873-z | view | ||
| Kim | Cell Rep | Parallel Single-Cell RNA-Seq and Genetic Recording Reveals Lineage Decisions in Developing Embryoid Bodies. | 2020-10-06 | 10.1016/j.celrep.2020.108222 | view | ||
| Wang | Eur J Pharmacol | Tissue distributions of antiviral drugs affect their capabilities of reducing viral loads in COVID-19 treatment. | 2020-10-06 | 10.1016/j.ejphar.2020.173634 | view | ||
| Carretta | Int J Mol Sci | Genomic Analysis of Hematopoietic Stem Cell at the Single-Cell Level: Optimization of Cell Fixation and Whole Genome Amplification (WGA) Protocol. | 2020-10-06 | 10.3390/ijms21197366 | view | ||
| Li | Stem Cell Reports | Single-Cell RNA-Seq Reveals that CD9 Is a Negative Marker of Glucose-Responsive Pancreatic β-like Cells Derived from Human Pluripotent Stem Cells. | 2020-10-06 | 10.1016/j.stemcr.2020.09.009 | view | ||
| Yasumizu | Bioinformatics | VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data. | 2020-10-05 | 10.1093/bioinformatics/btaa859 | view | ||
| Deng | Nat Med | Characteristics of anti-CD19 CAR T cell infusion products associated with efficacy and toxicity in patients with large B cell lymphomas. | 2020-10-05 | 10.1038/s41591-020-1061-7 | view | ||
| Darden | Shock | Single Cell RNA-SEQ of Human Myeloid Derived Suppressor Cells in Late Sepsis Reveals Multiple Subsets with Unique Transcriptional Responses: A Pilot Study. | 2020-10-05 | 10.1097/SHK.0000000000001671 | view | ||
| Men | Prospects for Use of Single-Cell Sequencing to Assess DNA Methylation in Asthma. | 2020-10-03 | 10.12659/MSM.925514 | view | |||
| Zhao | SC2disease: a manually curated database of single-cell transcriptome for human diseases. | 2020-10-03 | 10.1093/nar/gkaa838 | view | |||
| Hémon | Biochem Biophys Res Commun | SLC7A11 as a biomarker and therapeutic target in HPV-positive head and neck Squamous Cell Carcinoma. | 2020-10-03 | 10.1016/j.bbrc.2020.09.134 | view | ||
| Zhao | Generation of cortical neurons through large-scale expanding neuroepithelial stem cell from human pluripotent stem cells. | 2020-10-02 | 10.1186/s13287-020-01939-6 | view | |||
| Wu | EMBO J. | Stromal cell diversity associated with immune evasion in human triple-negative breast cancer. | 2020-10-01 | 10.15252/embj.2019104063 | view | ||
| Qiu | Massively parallel and time-resolved RNA sequencing in single cells with scNT-seq. | 2020-10-01 | 10.1038/s41592-020-0935-4 | view | |||
| Weber | PhyDOSE: Design of follow-up single-cell sequencing experiments of tumors. | 2020-10-01 | 10.1371/journal.pcbi.1008240 | view | |||
| Zhang | Imputing single-cell RNA-seq data by considering cell heterogeneity and prior expression of dropouts. | 2020-10-01 | 10.1093/jmcb/mjaa052 | view | |||
| Patruno | A review of computational strategies for denoising and imputation of single-cell transcriptomic data. | 2020-10-01 | 10.1093/bib/bbaa222 | view | |||
| Qi | A spectral clustering with self-weighted multiple kernel learning method for single-cell RNA-seq data. | 2020-10-01 | 10.1093/bib/bbaa216 | view | |||
| Ramamoorthy | EBF1 and Pax5 safeguard leukemic transformation by limiting IL-7 signaling, Myc expression, and folate metabolism. | 2020-10-01 | 10.1101/gad.340216.120 | view | |||
| Zerrouk | Identification of putative master regulators in rheumatoid arthritis synovial fibroblasts using gene expression data and network inference. | 2020-10-01 | 10.1038/s41598-020-73147-4 | view | |||
| Osborne | Defining the First Part of the Oncogenic KRAS Journey. | 2020-10-01 | 10.1016/j.stem.2020.09.009 | view | |||
| Attaf | Front Immunol | Corrigendum: FB5P-seq: FACS-Based 5-Prime End Single-Cell RNA-seq for Integrative Analysis of Transcriptome and Antigen Receptor Repertoire in B and T Cells. | 2020-10-01 | 10.3389/fimmu.2020.02047 | view | ||
| Li | Front Immunol | The Regulation of Exosome-Derived miRNA on Heterogeneity of Macrophages in Atherosclerotic Plaques. | 2020-10-01 | 10.3389/fimmu.2020.02175 | view | ||
| Milichko | Front Cell Dev Biol | Novel Glial Cell Functions: Extensive Potency, Stem Cell-Like Properties, and Participation in Regeneration and Transdifferentiation. | 2020-10-01 | 10.3389/fcell.2020.00809 | view | ||
| Yilmaz | Mol Syst Biol | Modeling tissue-relevant Caenorhabditis elegans metabolism at network, pathway, reaction, and metabolite levels. | 2020-10-01 | 10.15252/msb.20209649 | view | ||
| Venkatakrishnan | Cell Death Discov | Benchmarking evolutionary tinkering underlying human-viral molecular mimicry shows multiple host pulmonary-arterial peptides mimicked by SARS-CoV-2. | 2020-10-01 | 10.1038/s41420-020-00321-y | view | ||
| Kim | Hepatol Commun | Functionally Diverse Inflammatory Responses in Peripheral and Liver Monocytes in Alcohol-Associated Hepatitis. | 2020-10-01 | 10.1002/hep4.1563 | view | ||
| Yosef | PLoS One | Isolation and transcriptional characterization of mouse perivascular astrocytes. | 2020-10-01 | 10.1371/journal.pone.0240035 | view | ||
| Wu | Comput Struct Biotechnol J | Joint learning of multiple gene networks from single-cell gene expression data. | 2020-10-01 | 10.1016/j.csbj.2020.09.004 | view | ||
| Li | Front Med (Lausanne) | Evaluating Distribution and Prognostic Value of New Tumor-Infiltrating Lymphocytes in HCC Based on a scRNA-Seq Study With CIBERSORTx. | 2020-10-01 | 10.3389/fmed.2020.00451 | view | ||
| Ibrahim | Front Oncol | Diverse Macrophage Populations Contribute to the Inflammatory Microenvironment in Premalignant Lesions During Localized Invasion. | 2020-10-01 | 10.3389/fonc.2020.569985 | view | ||
| Ebert | Clin Transl Immunology | Endothelial, pericyte and tumor cell expression in glioblastoma identifies fibroblast activation protein (FAP) as an excellent target for immunotherapy. | 2020-10-01 | 10.1002/cti2.1191 | view | ||
| Lu | Cell Discov | Single-cell transcriptome atlas of lung adenocarcinoma featured with ground glass nodules. | 2020-10-01 | 10.1038/s41421-020-00200-x | view | ||
| Teschendorff | NPJ Genom Med | Improved detection of tumor suppressor events in single-cell RNA-Seq data. | 2020-10-01 | 10.1038/s41525-020-00151-y | view | ||
| Kadota | Front Genet | Commentary: A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines. | 2020-10-01 | 10.3389/fgene.2020.00941 | view | ||
| Wu | PeerJ | A robust semi-supervised NMF model for single cell RNA-seq data. | 2020-10-01 | 10.7717/peerj.10091 | view | ||
| Ray | Brain Behav Immun | A pharmacological interactome between COVID-19 patient samples and human sensory neurons reveals potential drivers of neurogenic pulmonary dysfunction. | 2020-10-01 | 10.1016/j.bbi.2020.05.078 | view | ||
| Nagaoka | J Immunother Cancer | Deep immunophenotyping at the single-cell level identifies a combination of anti-IL-17 and checkpoint blockade as an effective treatment in a preclinical model of data-guided personalized immunotherapy. | 2020-10-01 | 10.1136/jitc-2020-001358 | view | ||
| Wu | Front Immunol | Human Liver Macrophage Subsets Defined by CD32. | 2020-10-01 | 10.3389/fimmu.2020.02108 | view | ||
| Xu | Cell Discov | The differential immune responses to COVID-19 in peripheral and lung revealed by single-cell RNA sequencing. | 2020-10-01 | 10.1038/s41421-020-00225-2 | view | ||
| Kobak | Mach Learn Knowl Discov Databases | Heavy-tailed kernels reveal a finer cluster structure in t-SNE visualisations. | 2020-10-01 | 10.1007/978-3-030-46150-8_8 | view | ||
| Yan | J Mol Endocrinol | ARHGAP36 regulates proliferation and migration in papillary thyroid carcinoma cells. | 2020-10-01 | 10.1530/JME-20-0230 | view | ||
| Barker | PLoS One | Bioinformatic characterization of angiotensin-converting enzyme 2, the entry receptor for SARS-CoV-2. | 2020-10-01 | 10.1371/journal.pone.0240647 | view | ||
| Prieto-Fernández | Front Immunol | Hypoxia Promotes Syndecan-3 Expression in the Tumor Microenvironment. | 2020-10-01 | 10.3389/fimmu.2020.586977 | view | ||
| Borcherding | F1000Res | scRepertoire: An R-based toolkit for single-cell immune receptor analysis. | 2020-10-01 | 10.12688/f1000research.22139.1 | view | ||
| Cole | Adv Exp Med Biol | Microglia in the Brain Tumor Microenvironment. | 2020-10-01 | 10.1007/978-3-030-49270-0_11 | view | ||
| Duan | Sci Adv | Learning for single-cell assignment. | 2020-10-01 | 10.1126/sciadv.abd0855 | view | ||
| Tang | Clin Transl Med | The noncoding and coding transcriptional landscape of the peripheral immune response in patients with COVID-19. | 2020-10-01 | 10.1002/ctm2.200 | view | ||
| Huang | Eur Rev Med Pharmacol Sci | Single-cell transcriptomics reveals the heterogeneity of the decidual endothelial cells that participate in labor onset. | 2020-10-01 | 10.26355/eurrev_202010_23385 | view | ||
| Pan | Transl Vis Sci Technol | Laser Capture Microdissection-Based RNA Microsequencing Reveals Optic Nerve Crush-Related Early mRNA Alterations in Retinal Ganglion Cell Layer. | 2020-10-01 | 10.1167/tvst.9.11.30 | view | ||
| Kalinich | Recent Results Cancer Res. | Quantitative Analysis of Circulating Tumor Cells Using RNA-Based Digital Scoring. | 2020-10-01 | 10.1007/978-3-030-26439-0_4 | view | ||
| Li | J Mol Cell Biol | A new bioinformatics tool to recover missing gene expression in single-cell RNA sequencing data. | 2020-09-30 | 10.1093/jmcb/mjaa053 | view | ||
| Zhao | Cancer Res. | Transient activation of the Hedgehog-Gli pathway rescues radiotherapy-induced dry mouth via recovering salivary gland resident macrophages. | 2020-09-30 | 10.1158/0008-5472.CAN-20-0503 | view | ||
| Syage | J. Virol. | Single-cell RNA sequencing reveals the diversity of the immunological landscape following CNS infection by a murine coronavirus. | 2020-09-30 | 10.1128/JVI.01295-20 | view | ||
| Wolf | Circulation | Pathogenic Autoimmunity in Atherosclerosis Evolves From Initially Protective Apolipoprotein B100-Reactive CD4+ T-Regulatory Cells. | 2020-09-29 | 10.1161/CIRCULATIONAHA.119.042863 | view | ||
| Lin | Genome Med | Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions. | 2020-09-29 | 10.1186/s13073-020-00776-9 | view | ||
| Van Buren | Genet. Epidemiol. | TWO-SIGMA: A novel two-component single cell model-based association method for single-cell RNA-seq data. | 2020-09-29 | 10.1002/gepi.22361 | view | ||
| Phan | Elife | Lef1 expression in fibroblasts maintains developmental potential in adult skin to regenerate wounds. | 2020-09-29 | 10.7554/eLife.60066 | view | ||
| Gyllborg | Nucleic Acids Res. | Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue. | 2020-09-29 | 10.1093/nar/gkaa792 | view | ||
| Thrupp | Cell Rep | Single-Nucleus RNA-Seq Is Not Suitable for Detection of Microglial Activation Genes in Humans. | 2020-09-29 | 10.1016/j.celrep.2020.108189 | view | ||
| Wong | Affinity-Restricted Memory B Cells Dominate Recall Responses to Heterologous Flaviviruses. | 2020-09-29 | 10.1016/j.immuni.2020.09.001 | view | |||
| Depuydt | Circ. Res. | Microanatomy of the Human Atherosclerotic Plaque by Single-Cell Transcriptomics. | 2020-09-28 | 10.1161/CIRCRESAHA.120.316770 | view | ||
| Vazquez-Armendariz | EMBO J. | Multilineage murine stem cells generate complex organoids to model distal lung development and disease. | 2020-09-28 | 10.15252/embj.2019103476 | view | ||
| Kalra | PLoS Genet. | Biological insights from multi-omic analysis of 31 genomic risk loci for adult hearing difficulty. | 2020-09-28 | 10.1371/journal.pgen.1009025 | view | ||
| Hu | Proc. Natl. Acad. Sci. U.S.A. | Genetic landscape and autoimmunity of monocytes in developing Vogt-Koyanagi-Harada disease. | 2020-09-28 | 10.1073/pnas.2002476117 | view | ||
| Schumann | Nat. Immunol. | Functional CRISPR dissection of gene networks controlling human regulatory T cell identity. | 2020-09-28 | 10.1038/s41590-020-0784-4 | view | ||
| Song | The HDAC Inhibitor Domatinostat Promotes Cell Cycle Arrest, Induces Apoptosis and Increases Immunogenicity of Merkel Cell Carcinoma Cells. | 2020-09-28 | 10.1016/j.jid.2020.08.023 | view | |||
| Courtney | Small Bowel Resection Increases Paracellular Gut Barrier Permeability via Alterations of Tight Junction Complexes Mediated by Intestinal TLR4. | 2020-09-28 | 10.1016/j.jss.2020.08.049 | view | |||
| Jiang | Expert Rev Respir Med | Recent developments in the pathobiology of lung myofibroblasts. | 2020-09-27 | 10.1080/17476348.2021.1829972 | view | ||
| Ruiz-Villalba | Circulation | Single-Cell RNA-seq Analysis Reveals a Crucial Role for Collagen Triple Helix Repeat Containing 1 (CTHRC1) Cardiac Fibroblasts after Myocardial Infarction. | 2020-09-25 | 10.1161/CIRCULATIONAHA.119.044557 | view | ||
| Wendt | Science | A single-cell RNA-seq atlas of Schistosoma mansoni identifies a key regulator of blood feeding. | 2020-09-25 | 10.1126/science.abb7709 | view | ||
| Wang | Signal Transduct Target Ther | Nanoparticle enhanced combination therapy for stem-like progenitors defined by single-cell transcriptomics in chemotherapy-resistant osteosarcoma. | 2020-09-25 | 10.1038/s41392-020-00248-x | view | ||
| Cosgrove | Hum. Mol. Genet. | Genes influenced by MEF2C contribute to neurodevelopmental disease via gene expression changes that affect multiple types of cortical excitatory neurons. | 2020-09-25 | 10.1093/hmg/ddaa213 | view | ||
| Sun | Bioinformatics | BP4RNAseq: a babysitter package for retrospective and newly generated RNA-seq data analyses using both alignment-based and alignment-free quantification method. | 2020-09-25 | 10.1093/bioinformatics/btaa832 | view | ||
| Song | Nucleic Acids Res. | STAB: a spatio-temporal cell atlas of the human brain. | 2020-09-25 | 10.1093/nar/gkaa762 | view | ||
| Partel | FEBS J. | Spage2vec: Unsupervised representation of localized spatial gene expression signatures. | 2020-09-25 | 10.1111/febs.15572 | view | ||
| Feng | Stem Cell Res Ther | Immunosuppressive effects of mesenchymal stem cells on lung B cell gene expression in LPS-induced acute lung injury. | 2020-09-25 | 10.1186/s13287-020-01934-x | view | ||
| Conway | J. Am. Soc. Nephrol. | Kidney Single-Cell Atlas Reveals Myeloid Heterogeneity in Progression and Regression of Kidney Disease. | 2020-09-25 | 10.1681/ASN.2020060806 | view | ||
| Milner | Proc. Natl. Acad. Sci. U.S.A. | Delineation of a molecularly distinct terminally differentiated memory CD8 T cell population. | 2020-09-25 | 10.1073/pnas.2008571117 | view | ||
| Verrillo | J. Neurosci. Methods | A reliable strategy for single-cell RNA sequencing analysis using cryoconserved primary cortical cells. | 2020-09-25 | 10.1016/j.jneumeth.2020.108960 | view | ||
| Dangi | JCI Insight | Single-cell transcriptomics of mouse kidney transplants reveals a myeloid cell pathway for transplant rejection. | 2020-09-24 | 10.1172/jci.insight.141321 | view | ||
| Castagnola | Genome Res. | Agonist-induced Functional Analysis and Cell Sorting coupled with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain. | 2020-09-24 | 10.1101/gr.262717.120 | view | ||
| Bengtsson Gonzales | Sci Rep | Intrinsic electrophysiological properties predict variability in morphology and connectivity among striatal Parvalbumin-expressing Pthlh-cells. | 2020-09-24 | 10.1038/s41598-020-72588-1 | view | ||
| Sharma | Cell | Onco-fetal Reprogramming of Endothelial Cells Drives Immunosuppressive Macrophages in Hepatocellular Carcinoma. | 2020-09-24 | 10.1016/j.cell.2020.08.040 | view | ||
| Smith-Edwards | Gastroenterology | Sympathetic input to multiple cell types in mouse and human colon produces region-specific responses. | 2020-09-24 | 10.1053/j.gastro.2020.09.030 | view | ||
| AbdelMassih | Obes Med | Single cell sequencing unraveling genetic basis of shared immunologic switch between Severe COVID19 and Obesity. | 2020-09-24 | 10.1016/j.obmed.2020.100303 | view | ||
| Pan | Circulation | Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human. | 2020-09-23 | 10.1161/CIRCULATIONAHA.120.048378 | view | ||
| Gandhi | Elife | Bimodal function of chromatin remodeler Hmga1 in neural crest induction and Wnt-dependent emigration. | 2020-09-23 | 10.7554/eLife.57779 | view | ||
| Khazaei | Cancer Discov | H3.3G34W promotes growth and impedes differentiation of osteoblast-like mesenchymal progenitors in Giant Cell Tumour of Bone. | 2020-09-23 | 10.1158/2159-8290.CD-20-0461 | view | ||
| Magill | Nat Commun | Multiplatform genomic profiling and magnetic resonance imaging identify mechanisms underlying intratumor heterogeneity in meningioma. | 2020-09-23 | 10.1038/s41467-020-18582-7 | view | ||
| Zhang | Exp. Cell Res. | Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation. | 2020-09-23 | 10.1016/j.yexcr.2020.112299 | view | ||
| Ni | IEEE/ACM Trans Comput Biol Bioinform | scLRTD : A novel low rank tensor decomposition method for imputing missing values in single-cell multi-omics sequencing data. | 2020-09-22 | 10.1109/TCBB.2020.3025804 | view | ||
| Xu | BMC Genomics | Multi-scale supervised clustering-based feature selection for tumor classification and identification of biomarkers and targets on genomic data. | 2020-09-22 | 10.1186/s12864-020-07038-3 | view | ||
| Ha | Cell | Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans. | 2020-09-22 | 10.1016/j.cell.2020.09.009 | view | ||
| Singh | Cell Rep | A Single-Cell RNA Expression Map of Human Coronavirus Entry Factors. | 2020-09-22 | 10.1016/j.celrep.2020.108175 | view | ||
| Timshel | Elife | Genetic mapping of etiologic brain cell types for obesity. | 2020-09-21 | 10.7554/eLife.55851 | view | ||
| Abdelaal | Nucleic Acids Res. | SpaGE: Spatial Gene Enhancement using scRNA-seq. | 2020-09-21 | 10.1093/nar/gkaa740 | view | ||
| Wang | Aging (Albany NY) | Glioblastoma cell differentiation trajectory predicts the immunotherapy response and overall survival of patients. | 2020-09-21 | 10.18632/aging.103695 | view | ||
| Takeshima | Clin Epigenetics | Low-dose DNA demethylating therapy induces reprogramming of diverse cancer-related pathways at the single-cell level. | 2020-09-21 | 10.1186/s13148-020-00937-y | view | ||
| Ngo | Proc. Natl. Acad. Sci. U.S.A. | Circulating testican-2 is a podocyte-derived marker of kidney health. | 2020-09-21 | 10.1073/pnas.2009606117 | view | ||
| Penkava | Nat Commun | Single-cell sequencing reveals clonal expansions of pro-inflammatory synovial CD8 T cells expressing tissue-homing receptors in psoriatic arthritis. | 2020-09-21 | 10.1038/s41467-020-18513-6 | view | ||
| Beumer | Nat. Rev. Mol. Cell Biol. | Cell fate specification and differentiation in the adult mammalian intestine. | 2020-09-21 | 10.1038/s41580-020-0278-0 | view | ||
| Tian | Methods | Model-Based Autoencoders for Imputing Discrete single-cell RNA-seq Data. | 2020-09-21 | 10.1016/j.ymeth.2020.09.010 | view | ||
| Niu | Genomics | Single-cell RNA-seq reveals different subsets of non-specific cytotoxic cells in teleost. | 2020-09-21 | 10.1016/j.ygeno.2020.09.031 | view | ||
| Ortiz | EBioMedicine | Heterogeneous expression of the SARS-Coronavirus-2 receptor ACE2 in the human respiratory tract. | 2020-09-21 | 10.1016/j.ebiom.2020.102976 | view | ||
| Xia | Hum. Reprod. | Endosialin defines human stem Leydig cells with regenerative potential. | 2020-09-20 | 10.1093/humrep/deaa174 | view | ||
| Deng | Breast Cancer Res. Treat. | Serial single-cell profiling analysis of metastatic TNBC during Nab-paclitaxel and pembrolizumab treatment. | 2020-09-19 | 10.1007/s10549-020-05936-4 | view | ||
| Wang | Emerg Microbes Infect | An Atlas of Immune Cell Exhaustion in HIV-Infected Individuals Revealed by Single-Cell Transcriptomics. | 2020-09-19 | 10.1080/22221751.2020.1826361 | view | ||
| Burchill | Cell Mol Gastroenterol Hepatol | Oxidized Low-Density Lipoprotein drives dysfunction of the liver lymphatic system. | 2020-09-19 | 10.1016/j.jcmgh.2020.09.007 | view | ||
| Heavner | Proc. Natl. Acad. Sci. U.S.A. | Transcription factor expression defines subclasses of developing projection neurons highly similar to single-cell RNA-seq subtypes. | 2020-09-18 | 10.1073/pnas.2008013117 | view | ||
| Min | Biochem. Biophys. Res. Commun. | Phenotype-based single cell sequencing identifies diverse genetic subclones in CD133 positive cancer stem cells. | 2020-09-18 | 10.1016/j.bbrc.2020.09.005 | view | ||
| Erickson | AbSeq Protocol Using the Nano-Well Cartridge-Based Rhapsody Platform to Generate Protein and Transcript Expression Data on the Single-Cell Level. | 2020-09-18 | 10.1016/j.xpro.2020.100092 | view | |||
| Forte | Protocol for Isolation of Cardiac Interstitial Cells from Adult Murine Hearts for Unbiased Single Cell Profiling. | 2020-09-18 | 10.1016/j.xpro.2020.100077 | view | |||
| Oprescu | STAR Protoc | Single-Cell Isolation from Regenerating Murine Muscles for RNA-Sequencing Analysis. | 2020-09-18 | 10.1016/j.xpro.2020.100051 | view | ||
| DePasquale | STAR Protoc | Protocol for Identification and Removal of Doublets with DoubletDecon. | 2020-09-18 | 10.1016/j.xpro.2020.100085 | view | ||
| Le | STAR Protoc | Processing Human Thymic Tissue for Single Cell RNA-Seq. | 2020-09-18 | 10.1016/j.xpro.2020.100090 | view | ||
| Chen | BMC Bioinformatics | EnClaSC: a novel ensemble approach for accurate and robust cell-type classification of single-cell transcriptomes. | 2020-09-17 | 10.1186/s12859-020-03679-z | view | ||
| Zanini | Sci Rep | Northstar enables automatic classification of known and novel cell types from tumor samples. | 2020-09-17 | 10.1038/s41598-020-71805-1 | view | ||
| Fernandes | Sci Rep | Single-cell RNA-seq identifies unique transcriptional landscapes of human nucleus pulposus and annulus fibrosus cells. | 2020-09-17 | 10.1038/s41598-020-72261-7 | view | ||
| Mahalingam | J. Cell. Physiol. | Single-cell RNA sequencing analysis of SARS-CoV-2 entry receptors in human organoids. | 2020-09-17 | 10.1002/jcp.30054 | view | ||
| Cavagnero | Ann. Allergy Asthma Immunol. | Lipid-mediated innate lymphoid cell recruitment and activation in AERD. | 2020-09-17 | 10.1016/j.anai.2020.09.011 | view | ||
| Tan | Curr. Opin. Cell Biol. | A single-cell view of spermatogonial stem cells. | 2020-09-17 | 10.1016/j.ceb.2020.07.005 | view | ||
| Alsina | Curr. Opin. Cell Biol. | Mechanisms of cell specification and differentiation in vertebrate cranial sensory systems. | 2020-09-17 | 10.1016/j.ceb.2020.08.006 | view | ||
| Van Phan | Fixed single-cell RNA sequencing for understanding virus infection and host response. | 2020-09-17 | 10.1101/2020.09.17.302232 | view | |||
| Rai | Sci Rep | The immune response after noise damage in the cochlea is characterized by a heterogeneous mix of adaptive and innate immune cells. | 2020-09-16 | 10.1038/s41598-020-72181-6 | view | ||
| Liu | Nature | Reprogramming roadmap reveals route to human induced trophoblast stem cells. | 2020-09-16 | 10.1038/s41586-020-2734-6 | view | ||
| Li | Wiley Interdiscip Rev Dev Biol | Single-cell RNA sequencing in Drosophila: Technologies and applications. | 2020-09-16 | 10.1002/wdev.396 | view | ||
| Bamias | Clin. Gastroenterol. Hepatol. | Exploring the early phase of Crohn's disease. | 2020-09-16 | 10.1016/j.cgh.2020.09.023 | view | ||
| Nguyen | Brief Bioinform | A comprehensive survey of regulatory network inference methods using single-cell RNA sequencing data. | 2020-09-16 | 10.1093/bib/bbaa190 | view | ||
| Kashima | Exp. Mol. Med. | Single-cell sequencing techniques from individual to multiomics analyses. | 2020-09-15 | 10.1038/s12276-020-00499-2 | view | ||
| Panina | Exp. Mol. Med. | Human Cell Atlas and cell-type authentication for regenerative medicine. | 2020-09-15 | 10.1038/s12276-020-0421-1 | view | ||
| Fan | Exp. Mol. Med. | Single-cell transcriptomics in cancer: computational challenges and opportunities. | 2020-09-15 | 10.1038/s12276-020-0422-0 | view | ||
| Paik | Circulation | Single-Cell RNA-seq Unveils Unique Transcriptomic Signatures of Organ-Specific Endothelial Cells. | 2020-09-15 | 10.1161/CIRCULATIONAHA.119.041433 | view | ||
| Bi | Integr Biol (Camb) | Tumor-on-a-chip platform to interrogate the role of macrophages in tumor progression. | 2020-09-15 | 10.1093/intbio/zyaa017 | view | ||
| Xu | Stem Cells | Single-cell profiling of lncRNAs and their cell lineage commitment roles via RNA-DNA-DNA triplex formation in mammary epithelium. | 2020-09-15 | 10.1002/stem.3274 | view | ||
| Chen | Lab Chip | μCB-seq: microfluidic cell barcoding and sequencing for high-resolution imaging and sequencing of single cells. | 2020-09-15 | 10.1039/d0lc00169d | view | ||
| Encarnação | Mol Genet Genomic Med | NPC1 silent variant induces skipping of exon 11 (p.V562V) and unfolded protein response was found in a specific Niemann-Pick type C patient. | 2020-09-15 | 10.1002/mgg3.1451 | view | ||
| Jiang | Clin. Exp. Allergy | Gene signatures from scRNA-seq accurately quantify mast cells in biopsies in asthma. | 2020-09-15 | 10.1111/cea.13732 | view | ||
| Dong | Cancer Cell | Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma. | 2020-09-15 | 10.1016/j.ccell.2020.08.014 | view | ||
| Jacobs | Exp. Hematol. | Detection of chemotherapy-resistant patient-derived acute lymphoblastic leukemia clones in murine xenografts using cellular barcodes. | 2020-09-15 | 10.1016/j.exphem.2020.09.188 | view | ||
| Helmke | Eur. J. Immunol. | Peritoneal dialysate-range hypertonic glucose promotes T cell IL-17 production that induces mesothelial inflammation. | 2020-09-14 | 10.1002/eji.202048733 | view | ||
| Guo | BMC Genomics | RNA-seq analysis of galaninergic neurons from ventrolateral preoptic nucleus identifies expression changes between sleep and wake. | 2020-09-14 | 10.1186/s12864-020-07050-7 | view | ||
| Ravenscroft | J. Neurosci. | Drosophila voltage-gated sodium channels are only expressed in active neurons and are localized to distal axonal initial segment-like domains. | 2020-09-14 | 10.1523/JNEUROSCI.0142-20.2020 | view | ||
| Song | bioRxiv | Immunologically distinct responses occur in the CNS of COVID-19 patients. | 2020-09-12 | 10.1101/2020.09.11.293464 | view | ||
| Radtke | Mol Ther Methods Clin Dev | Purification of Human CD34+CD90+ HSCs Reduces Target Cell Population and Improves Lentiviral Transduction for Gene Therapy. | 2020-09-11 | 10.1016/j.omtm.2020.07.010 | view | ||
| Nguyen | Cancer Immunol. Immunother. | Next-generation humanized patient-derived xenograft mouse model for pre-clinical antibody studies in neuroblastoma. | 2020-09-11 | 10.1007/s00262-020-02713-6 | view | ||
| Zhang | Cell Oncol (Dordr) | 1p/19q co-deletion status is associated with distinct tumor-associated macrophage infiltration in IDH mutated lower-grade gliomas. | 2020-09-11 | 10.1007/s13402-020-00561-1 | view | ||
| Hwang | Wiley Interdiscip Rev Syst Biol Med | The shifting shape and functional specializations of the cell cycle during lineage development. | 2020-09-11 | 10.1002/wsbm.1504 | view | ||
| Weinberger | Nat Commun | Ontogeny of arterial macrophages defines their functions in homeostasis and inflammation. | 2020-09-11 | 10.1038/s41467-020-18287-x | view | ||
| Kalra | Commun Biol | Analysis of single-cell transcriptomes links enrichment of olfactory receptors with cancer cell differentiation status and prognosis. | 2020-09-11 | 10.1038/s42003-020-01232-5 | view | ||
| Zarinsefat | bioRxiv | Single-cell RNA sequencing of Tocilizumab-treated peripheral blood mononuclear cells as an in vitro model of inflammation. | 2020-09-11 | 10.1101/2020.09.11.281782 | view | ||
| Omori | Cell Metab. | Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16high Cells In Vivo. | 2020-09-11 | 10.1016/j.cmet.2020.09.006 | view | ||
| Parker | Cell | Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies. | 2020-09-11 | 10.1016/j.cell.2020.08.022 | view | ||
| Huang | Genome Biol. | Natural display of nuclear-encoded RNA on the cell surface and its impact on cell interaction. | 2020-09-10 | 10.1186/s13059-020-02145-6 | view | ||
| McAndrews | EMBO J. | A map of human breast cancer: new players in stromal-immune crosstalk. | 2020-09-10 | 10.15252/embj.2020106368 | view | ||
| Akiba | Curr. Opin. Gastroenterol. | Duodenal chemosensory system: enterocytes, enteroendocrine cells, and tuft cells. | 2020-09-10 | 10.1097/MOG.0000000000000685 | view | ||
| Dadaneh | BMC Genomics | Bayesian gamma-negative binomial modeling of single-cell RNA sequencing data. | 2020-09-09 | 10.1186/s12864-020-06938-8 | view | ||
| Chen | Am. J. Physiol., Cell Physiol. | Heterogeneous groups of alveolar type II cells in lung homeostasis and repair. | 2020-09-09 | 10.1152/ajpcell.00341.2020 | view | ||
| Tran | PLoS Comput. Biol. | Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data. | 2020-09-09 | 10.1371/journal.pcbi.1008205 | view | ||
| Griss | Mol. Cell Proteomics | ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis. | 2020-09-09 | 10.1074/mcp.TIR120.002155 | view | ||
| Schlesinger | Nat Commun | Single-cell transcriptomes of pancreatic preinvasive lesions and cancer reveal acinar metaplastic cells' heterogeneity. | 2020-09-09 | 10.1038/s41467-020-18207-z | view | ||
| Palikuqi | Nature | Adaptable haemodynamic endothelial cells for organogenesis and tumorigenesis. | 2020-09-09 | 10.1038/s41586-020-2712-z | view | ||
| Maiuri | Neuron | Single Cell Technologies Define New Therapeutic Avenues for Huntington's Disease. | 2020-09-09 | 10.1016/j.neuron.2020.08.007 | view | ||
| Shankar | Kidney Int. | Human kidney organoids produce functional renin. | 2020-09-09 | 10.1016/j.kint.2020.08.008 | view | ||
| Wen | PLoS Comput. Biol. | VALERIE: Visual-based inspection of alternative splicing events at single-cell resolution. | 2020-09-08 | 10.1371/journal.pcbi.1008195 | view | ||
| Cho | Nat Commun | Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila. | 2020-09-08 | 10.1038/s41467-020-18135-y | view | ||
| Wang | J. Exp. Med. | Anti-human TREM2 induces microglia proliferation and reduces pathology in an Alzheimer's disease model. | 2020-09-07 | 10.1084/jem.20200785 | view | ||
| Wang | J. Cell Biol. | Different lineage contexts direct common pro-neural factors to specify distinct retinal cell subtypes. | 2020-09-07 | 10.1083/jcb.202003026 | view | ||
| Voigt | Exp. Eye Res. | Spectacle: An interactive resource for ocular single-cell RNA sequencing data analysis. | 2020-09-07 | 10.1016/j.exer.2020.108204 | view | ||
| Bagnall | Cell Syst | Gene-Specific Linear Trends Constrain Transcriptional Variability of the Toll-like Receptor Signaling. | 2020-09-07 | 10.1016/j.cels.2020.08.007 | view | ||
| Baron | Cell Syst | The Stress-Like Cancer Cell State Is a Consistent Component of Tumorigenesis. | 2020-09-05 | 10.1016/j.cels.2020.08.018 | view | ||
| Arunachalam | Science | Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans. | 2020-09-04 | 10.1126/science.abc6261 | view | ||
| Teschendorff | Genome Biol. | EPISCORE: cell type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data. | 2020-09-04 | 10.1186/s13059-020-02126-9 | view | ||
| Wang | Science | Changes in regeneration-responsive enhancers shape regenerative capacities in vertebrates. | 2020-09-04 | 10.1126/science.aaz3090 | view | ||
| Chan | Circulation | Prioritizing Candidates of Post-Myocardial Infarction Heart Failure Using Plasma Proteomics and Single-Cell Transcriptomics. | 2020-09-04 | 10.1161/CIRCULATIONAHA.119.045158 | view | ||
| Davis | JCI Insight | Epigenetic regulation of the PGE2 pathway modulates macrophage phenotype in normal and pathologic wound repair. | 2020-09-03 | 10.1172/jci.insight.138443 | view | ||
| Zhao | Blood | Tumor intrinsic and extrinsic determinants of response to blinatumomab in adults with B-ALL. | 2020-09-03 | 10.1182/blood.2020006287 | view | ||
| Chen | J. Am. Soc. Nephrol. | Two Tales of Single-Cell RNA Sequencing: Gene Expression and Alternative Splicing in Mouse Kidney Development. | 2020-09-03 | 10.1681/ASN.2020081180 | view | ||
| Pei | Cell Stem Cell | Resolving Fates and Single-Cell Transcriptomes of Hematopoietic Stem Cell Clones by PolyloxExpress Barcoding. | 2020-09-03 | 10.1016/j.stem.2020.07.018 | view | ||
| Keyvani Chahi | Cell Stem Cell | Hematopoiesis in High Definition: Combining State and Fate Mapping. | 2020-09-03 | 10.1016/j.stem.2020.08.010 | view | ||
| Mi | Chin. Med. J. | Application of single-cell sequencing in autoimmune diseases. | 2020-09-03 | 10.1097/CM9.0000000000001050 | view | ||
| Meyer | Gastroenterology | Group 2 innate lymphoid cells coordinate damage response in the stomach. | 2020-09-03 | 10.1053/j.gastro.2020.08.051 | view | ||
| Huo | Front Med | Effects of vitrification and cryostorage duration on single-cell RNA-Seq profiling of vitrified-thawed human metaphase II oocytes. | 2020-09-02 | 10.1007/s11684-020-0792-7 | view | ||
| Wen | Am. J. Respir. Crit. Care Med. | In Vivo Generation of Lung and Thyroid Tissues from Embryonic Stem Cells using Blastocyst Complementation. | 2020-09-02 | 10.1164/rccm.201909-1836OC | view | ||
| Mentkowski | Am. J. Physiol., Cell Physiol. | Monocyte recruitment and fate specification after myocardial infarction. | 2020-09-02 | 10.1152/ajpcell.00330.2020 | view | ||
| De Micheli | Am. J. Physiol., Cell Physiol. | Single-cell Transcriptomic Analyses Identifies Extensive Heterogeneity in the Cellular Composition of Mouse Achilles Tendons. | 2020-09-02 | 10.1152/ajpcell.00372.2020 | view | ||
| Yazicioglu | Am. J. Physiol. Lung Cell Mol. Physiol. | Aging impairs alveolar epithelial type II cell function in acute lung injury. | 2020-09-02 | 10.1152/ajplung.00093.2020 | view | ||
| Son | Cancer Immunol Res | Tumor-Infiltrating Regulatory T Cell Accumulation in the Tumor Microenvironment is Mediated by IL33/ST2 Signaling. | 2020-09-02 | 10.1158/2326-6066.CIR-19-0828 | view | ||
| Sayols | Development | Signalling codes for the maintenance and lineage commitment of embryonic gastric epithelial progenitors. | 2020-09-02 | 10.1242/dev.188839 | view | ||
| Ariss | J. Cell. Sci. | Amalgam regulates the receptor tyrosine kinase pathway through Sprouty in glial cell development. | 2020-09-02 | 10.1242/jcs.250837 | view | ||
| Zaccaria | Nat. Biotechnol. | Characterizing allele- and haplotype-specific copy numbers in single cells with CHISEL. | 2020-09-02 | 10.1038/s41587-020-0661-6 | view | ||
| Postlethwait | bioRxiv | An intestinal cell type in zebrafish is the nexus for the SARS-CoV-2 receptor and the Renin-Angiotensin-Aldosterone System that contributes to COVID-19 comorbidities. | 2020-09-02 | 10.1101/2020.09.01.278366 | view | ||
| Min | iScience | p63 and Its Target Follistatin Maintain Salivary Gland Stem/Progenitor Cell Function through TGF-β/Activin Signaling. | 2020-09-02 | 10.1016/j.isci.2020.101524 | view | ||
| Zhang | Nat. Immunol. | Single-cell landscape of immunological responses in patients with COVID-19. | 2020-09-01 | 10.1038/s41590-020-0762-x | view | ||
| Bounab | Nat Protoc | Dynamic single-cell phenotyping of immune cells using the microfluidic platform DropMap. | 2020-09-01 | 10.1038/s41596-020-0354-0 | view | ||
| Germain | Genome Biol. | pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools. | 2020-09-01 | 10.1186/s13059-020-02136-7 | view | ||
| He | Genome Biol. | CSS: cluster similarity spectrum integration of single-cell genomics data. | 2020-09-01 | 10.1186/s13059-020-02147-4 | view | ||
| Shin | Cell Rep | Controlled Cycling and Quiescence Enables Efficient HDR in Engraftment-Enriched Adult Hematopoietic Stem and Progenitor Cells. | 2020-09-01 | 10.1016/j.celrep.2020.108093 | view | ||
| Das | Cancers (Basel) | Cancer-Specific Immune Prognostic Signature in Solid Tumors and Its Relation to Immune Checkpoint Therapies. | 2020-09-01 | 10.3390/cancers12092476 | view | ||
| Chiffelle | Curr. Opin. Biotechnol. | T-cell repertoire analysis and metrics of diversity and clonality. | 2020-09-01 | 10.1016/j.copbio.2020.07.010 | view | ||
| O'Leary | Elife | Extensive and spatially variable within-cell-type heterogeneity across the basolateral amygdala. | 2020-09-01 | 10.7554/eLife.59003 | view | ||
| Sci Adv | Diversification of reprogramming trajectories revealed by parallel single-cell transcriptome and chromatin accessibility sequencing. | 2020-09-01 | 10.1126/sciadv.aba1190 | view | |||
| Ren | Comput Biol Chem | L2,1-Extreme Learning Machine: An Efficient Robust Classifier for Tumor Classification. | 2020-09-01 | 10.1016/j.compbiolchem.2020.107368 | view | ||
| Pang | Cancer Manag Res | S1PR2 Knockdown Promotes Migration and Invasion in Multiple Myeloma Cells via NF-κB Activation. | 2020-09-01 | 10.2147/CMAR.S237330 | view | ||
| Savulescu | Front Mol Biosci | Pinpointing Cell Identity in Time and Space. | 2020-09-01 | 10.3389/fmolb.2020.00209 | view | ||
| Qie | Theranostics | Single-cell RNA-Seq reveals the transcriptional landscape and heterogeneity of skin macrophages in Vsir-/- murine psoriasis. | 2020-09-01 | 10.7150/thno.45614 | view | ||
| Mandrycky | Sci Adv | 3D curvature-instructed endothelial flow response and tissue vascularization. | 2020-09-01 | 10.1126/sciadv.abb3629 | view | ||
| Yu | Adv. Exp. Med. Biol. | Understanding Diseases from Single-Cell Sequencing and Methylation. | 2020-09-01 | 10.1007/978-981-15-4494-1_1 | view | ||
| Pensold | Adv. Exp. Med. Biol. | Methods for Single-Cell Isolation and Preparation. | 2020-09-01 | 10.1007/978-981-15-4494-1_2 | 1 | view | |
| Gupta | Adv. Exp. Med. Biol. | Single-Cell Sequencing of T cell Receptors: A Perspective on the Technological Development and Translational Application. | 2020-09-01 | 10.1007/978-981-15-4494-1_3 | view | ||
| Wu | Adv. Exp. Med. Biol. | Single Cell Sequencing: A New Dimension in Cancer Diagnosis and Treatment. | 2020-09-01 | 10.1007/978-981-15-4494-1_9 | view | ||
| Luo | Adv. Exp. Med. Biol. | Application of Single-Cell RNA Sequencing in Pancreatic Cancer and the Endocrine Pancreas. | 2020-09-01 | 10.1007/978-981-15-4494-1_12 | view | ||
| Murphy | Adv. Exp. Med. Biol. | Single-Cell Sequencing in Genitourinary Malignancies. | 2020-09-01 | 10.1007/978-981-15-4494-1_13 | view | ||
| Bagger | Adv. Exp. Med. Biol. | Single Cell Sequencing in Cancer Diagnostics. | 2020-09-01 | 10.1007/978-981-15-4494-1_15 | view | ||
| Garcia | Adv. Exp. Med. Biol. | Single Cell RNA Sequencing in Human Disease: Renal, Pancreatic, and Viral Diseases. | 2020-09-01 | 10.1007/978-981-15-4494-1_16 | view | ||
| Singh | Adv. Exp. Med. Biol. | Single-Cell Sequencing in Human Genital Infections. | 2020-09-01 | 10.1007/978-981-15-4494-1_17 | view | ||
| Chang | Adv. Exp. Med. Biol. | Values of Single-Cell RNA Sequencing in Development of Cerebral Cortex. | 2020-09-01 | 10.1007/978-981-15-4494-1_19 | view | ||
| Paez | J Open Source Softw | scTree: An R package to generate antibody-compatible classifiers from single-cell sequencing data. | 2020-09-01 | 10.21105/joss.02061 | view | ||
| Gustafsson | PLoS ONE | Sources of variation in cell-type RNA-Seq profiles. | 2020-09-01 | 10.1371/journal.pone.0239495 | view | ||
| Parikh | J Immunother Cancer | Malignant cell-specific CXCL14 promotes tumor lymphocyte infiltration in oral cavity squamous cell carcinoma. | 2020-09-01 | 10.1136/jitc-2020-001048 | view | ||
| Zhang | Front Genet | Single Cell RNA-seq Data Analysis Reveals the Potential Risk of SARS-CoV-2 Infection Among Different Respiratory System Conditions. | 2020-09-01 | 10.3389/fgene.2020.00942 | view | ||
| Ashary | Front Cell Dev Biol | Single-Cell RNA-seq Identifies Cell Subsets in Human Placenta That Highly Expresses Factors Driving Pathogenesis of SARS-CoV-2. | 2020-09-01 | 10.3389/fcell.2020.00783 | view | ||
| Zhou | Onco Targets Ther | HSPA12B Secreted by Tumor-Associated Endothelial Cells Might Induce M2 Polarization of Macrophages via Activating PI3K/Akt/mTOR Signaling. | 2020-09-01 | 10.2147/OTT.S254985 | view | ||
| Healy | Front Immunol | Transcriptional Profiling of CD8+ CMV-Specific T Cell Functional Subsets Obtained Using a Modified Method for Isolating High-Quality RNA From Fixed and Permeabilized Cells. | 2020-09-01 | 10.3389/fimmu.2020.01859 | view | ||
| Park | Front Immunol | Re-analysis of Single Cell Transcriptome Reveals That the NR3C1-CXCL8-Neutrophil Axis Determines the Severity of COVID-19. | 2020-09-01 | 10.3389/fimmu.2020.02145 | view | ||
| Chiba | Front Cell Dev Biol | Single-Cell RNA-Sequencing From Mouse Incisor Reveals Dental Epithelial Cell-Type Specific Genes. | 2020-09-01 | 10.3389/fcell.2020.00841 | view | ||
| Seirup | PLoS ONE | Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis. | 2020-09-01 | 10.1371/journal.pone.0239711 | view | ||
| Kim | Genomics Inform | A semi-automatic cell type annotation method for single-cell RNA sequencing dataset. | 2020-09-01 | 10.5808/GI.2020.18.3.e26 | view | ||
| Li | Reproduction | Single Cell Transcriptome Research in Human Placenta. | 2020-09-01 | 10.1530/REP-20-0231 | view | ||
| Han | Methods Mol. Biol. | The Adaptome as Biomarker for Assessing Cancer Immunity and Immunotherapy. | 2020-09-01 | 10.1007/978-1-4939-9773-2_17 | 1 | view | |
| Lantz | Sci Rep | Single-cell RNA sequencing uncovers heterogenous transcriptional signatures in macrophages during efferocytosis. | 2020-08-31 | 10.1038/s41598-020-70353-y | view | ||
| Kim | Nat Commun | The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development. | 2020-08-31 | 10.1038/s41467-020-18231-z | view | ||
| Lee | Nat Commun | Single-cell RNA sequencing identifies shared differentiation paths of mouse thymic innate T cells. | 2020-08-31 | 10.1038/s41467-020-18155-8 | view | ||
| Hoffman | Cell Mol Gastroenterol Hepatol | The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mice. | 2020-08-31 | 10.1016/j.jcmgh.2020.08.011 | view | ||
| Suter | Neurobiol. Dis. | Epigenetic pathways and plasticity in brain tumors. | 2020-08-30 | 10.1016/j.nbd.2020.105060 | view | ||
| Bonnay | Cell | Oxidative Metabolism Drives Immortalization of Neural Stem Cells during Tumorigenesis. | 2020-08-30 | 10.1016/j.cell.2020.07.039 | view | ||
| Zhou | J. Mol. Cell. Cardiol. | Reading the heart at single-cell resolution. | 2020-08-29 | 10.1016/j.yjmcc.2020.08.010 | view | ||
| Schmid | J Pharmacol Toxicol Methods | Characterization of iCell cardiomyocytes using single-cell RNA-sequencing methods. | 2020-08-29 | 10.1016/j.vascn.2020.106915 | view | ||
| Ramesh | Proc. Natl. Acad. Sci. U.S.A. | A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis. | 2020-08-28 | 10.1073/pnas.2008523117 | view | ||
| Manoranjan | Nat Commun | Wnt activation as a therapeutic strategy in medulloblastoma. | 2020-08-28 | 10.1038/s41467-020-17953-4 | view | ||
| Vandenbon | Nat Commun | A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data. | 2020-08-28 | 10.1038/s41467-020-17900-3 | view | ||
| Januszyk | Micromachines (Basel) | Characterization of Diabetic and Non-Diabetic Foot Ulcers Using Single-Cell RNA-Sequencing. | 2020-08-28 | 10.3390/mi11090815 | view | ||
| Mohammed | Int J Mol Sci | Δ9-Tetrahydrocannabinol Prevents Mortality from Acute Respiratory Distress Syndrome through the Induction of Apoptosis in Immune Cells, Leading to Cytokine Storm Suppression. | 2020-08-28 | 10.3390/ijms21176244 | view | ||
| Hou | Genome Biol. | A systematic evaluation of single-cell RNA-sequencing imputation methods. | 2020-08-27 | 10.1186/s13059-020-02132-x | view | ||
| Yoda | Microbiol Resour Announc | High-Quality Draft Single-Cell Genome Sequences of Two Gammaproteobacteria Strains Sampled from Soil in a Strawberry Farm. | 2020-08-27 | 10.1128/MRA.00743-20 | view | ||
| McFarland | Nat Commun | Multiplexed single-cell transcriptional response profiling to define cancer vulnerabilities and therapeutic mechanism of action. | 2020-08-27 | 10.1038/s41467-020-17440-w | view | ||
| Aldridge | Nat Commun | Single cell transcriptomics comes of age. | 2020-08-27 | 10.1038/s41467-020-18158-5 | view | ||
| Han | Nat Commun | Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis. | 2020-08-27 | 10.1038/s41467-020-17968-x | view | ||
| Xi | Elife | m6A RNA methylation impacts fate choices during skin morphogenesis. | 2020-08-26 | 10.7554/eLife.56980 | view | ||
| Andreatta | Bioinformatics | STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data. | 2020-08-26 | 10.1093/bioinformatics/btaa755 | view | ||
| Drag | BMC Neurol | A longitudinal study of the post-stroke immune response and cognitive functioning: the StrokeCog study protocol. | 2020-08-26 | 10.1186/s12883-020-01897-9 | view | ||
| McIntyre | Proc. Natl. Acad. Sci. U.S.A. | β2 Integrins differentially regulate γδ T cell subset thymic development and peripheral maintenance. | 2020-08-26 | 10.1073/pnas.1921930117 | view | ||
| Chen | Int J Mol Sci | Conventional Co-Housing Modulates Murine Gut Microbiota and Hematopoietic Gene Expression. | 2020-08-26 | 10.3390/ijms21176143 | view | ||
| Pham | Brief. Bioinformatics | The winning methods for predicting cellular position in the DREAM single-cell transcriptomics challenge. | 2020-08-25 | 10.1093/bib/bbaa181 | view | ||
| Yeo | Elife | Single-cell RNA-sequencing reveals distinct patterns of cell state heterogeneity in mouse models of breast cancer. | 2020-08-25 | 10.7554/eLife.58810 | view | ||
| Baran-Gale | Elife | Ageing compromises mouse thymus function and remodels epithelial cell differentiation. | 2020-08-25 | 10.7554/eLife.56221 | view | ||
| Osorio | Bioinformatics | Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA sequencing data quality control. | 2020-08-25 | 10.1093/bioinformatics/btaa751 | view | ||
| Eikmans | HLA | Got your mother in a whirl: the role of maternal T cells and myeloid cells in pregnancy. | 2020-08-25 | 10.1111/tan.14055 | view | ||
| Wang | Nat Commun | Single cell transcriptomics of human epidermis identifies basal stem cell transition states. | 2020-08-25 | 10.1038/s41467-020-18075-7 | view | ||
| Hossain | Med Res Rev | Reinvigorating exhausted CD8+ cytotoxic T lymphocytes in the tumor microenvironment and current strategies in cancer immunotherapy. | 2020-08-25 | 10.1002/med.21727 | view | ||
| Park | Cell Rep | Single-Cell Transcriptome Analysis of Colon Cancer Cell Response to 5-Fluorouracil-Induced DNA Damage. | 2020-08-25 | 10.1016/j.celrep.2020.108077 | view | ||
| Sandu | Cell Rep | Landscape of Exhausted Virus-Specific CD8 T Cells in Chronic LCMV Infection. | 2020-08-25 | 10.1016/j.celrep.2020.108078 | view | ||
| Dibaeinia | Cell Syst | SERGIO: A Single-Cell Expression Simulator Guided by Gene Regulatory Networks. | 2020-08-25 | 10.1016/j.cels.2020.08.003 | view | ||
| Narayanan | J Vis Exp | Nuclei Isolation from Fresh Frozen Brain Tumors for Single-Nucleus RNA-seq and ATAC-seq. | 2020-08-25 | 10.3791/61542 | view | ||
| Cho | J Vis Exp | Preparation of Adipose Progenitor Cells from Mouse Epididymal Adipose Tissues. | 2020-08-25 | 10.3791/61694 | view | ||
| Raimundo | Genome Biol. | Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis. | 2020-08-24 | 10.1186/s13059-020-02128-7 | view | ||
| Lawson | Elife | An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes. | 2020-08-24 | 10.7554/eLife.55792 | view | ||
| Li | PLoS Comput. Biol. | A novel single-cell based method for breast cancer prognosis. | 2020-08-24 | 10.1371/journal.pcbi.1008133 | view | ||
| Yuste | Nat. Neurosci. | A community-based transcriptomics classification and nomenclature of neocortical cell types. | 2020-08-24 | 10.1038/s41593-020-0685-8 | 1 | view | |
| Holloway | Dev. Cell | Differentiation of Human Intestinal Organoids with Endogenous Vascular Endothelial Cells. | 2020-08-24 | 10.1016/j.devcel.2020.07.023 | view | ||
| Deng | Brief. Bioinformatics | LncAS2Cancer: a comprehensive database for alternative splicing of lncRNAs across human cancers. | 2020-08-21 | 10.1093/bib/bbaa179 | view | ||
| Meng | Circulation | A Reservoir of Fibroblasts Promotes Recovery from Limb Ischemia. | 2020-08-21 | 10.1161/CIRCULATIONAHA.120.046872 | view | ||
| Hao | Hum. Mol. Genet. | Integrative Analysis of scRNA-seq and GWAS Data Pinpoints Periportal Hepatocytes as the Relevant Liver Cell Types for Blood Lipids. | 2020-08-21 | 10.1093/hmg/ddaa188 | view | ||
| Brechbuhl | Mol. Carcinog. | Analysis of circulating breast cancer cell heterogeneity and interactions with peripheral blood mononuclear cells. | 2020-08-21 | 10.1002/mc.23242 | view | ||
| Ye | Cells | Detecting Interactive Gene Groups for Single-Cell RNA-Seq Data Based on Co-Expression Network Analysis and Subgraph Learning. | 2020-08-21 | 10.3390/cells9091938 | view | ||
| Maucourant | Sci Immunol | Natural killer cell immunotypes related to COVID-19 disease severity. | 2020-08-21 | 10.1126/sciimmunol.abd6832 | view | ||
| Mazzara | Nat Commun | Frataxin gene editing rescues Friedreich's ataxia pathology in dorsal root ganglia organoid-derived sensory neurons. | 2020-08-21 | 10.1038/s41467-020-17954-3 | view | ||
| Faure | Nat Commun | Single cell RNA sequencing identifies early diversity of sensory neurons forming via bi-potential intermediates. | 2020-08-21 | 10.1038/s41467-020-17929-4 | view | ||
| Bockerstett | Gastroenterology | Single Cell Transcriptional Analyses Identify Lineage-Specific Epithelial Responses to Inflammation and Metaplastic Development in the Gastric Corpus. | 2020-08-21 | 10.1053/j.gastro.2020.08.027 | view | ||
| Cutillo | BMC Bioinformatics | OscoNet: inferring oscillatory gene networks. | 2020-08-21 | 10.1186/s12859-020-03561-y | view | ||
| Yang | Theriogenology | Single cell RNA-seq reveals molecular pathways altered by 7, 12-dimethylbenz[a]anthracene treatment on pig oocytes. | 2020-08-21 | 10.1016/j.theriogenology.2020.08.020 | view | ||
| Rocha-Resende | JCI Insight | Developmental changes in myocardial B cells mirror changes in B cells associated with different organs. | 2020-08-20 | 10.1172/jci.insight.139377 | view | ||
| Katzenelenbogen | Cell | Coupled scRNA-Seq and Intracellular Protein Activity Reveal an Immunosuppressive Role of TREM2 in Cancer. | 2020-08-20 | 10.1016/j.cell.2020.06.032 | view | ||
| Molgora | Cell | TREM2 Modulation Remodels the Tumor Myeloid Landscape Enhancing Anti-PD-1 Immunotherapy. | 2020-08-20 | 10.1016/j.cell.2020.07.013 | view | ||
| Banerjee | Gastroenterology | Succinate Produced by Intestinal Microbes Promotes Specification of Tuft Cells to Suppress Ileal Inflammation. | 2020-08-20 | 10.1053/j.gastro.2020.08.029 | view | ||
| Hirata | iScience | The Brain Microenvironment Induces DNMT1 Suppression and Indolence of Metastatic Cancer Cells. | 2020-08-20 | 10.1016/j.isci.2020.101480 | view | ||
| Vafadarnejad | Circ. Res. | Dynamics of Cardiac Neutrophil Diversity in Murine Myocardial Infarction. | 2020-08-19 | 10.1161/CIRCRESAHA.120.317200 | view | ||
| Tong | Virchows Arch. | FOXI1 expression in chromophobe renal cell carcinoma and renal oncocytoma: a study of The Cancer Genome Atlas transcriptome-based outlier mining and immunohistochemistry. | 2020-08-19 | 10.1007/s00428-020-02900-x | view | ||
| Perillo | Elife | Regulation of dynamic pigment cell states at single-cell resolution. | 2020-08-19 | 10.7554/eLife.60388 | view | ||
| Mahadevaiah | Nature | A single-cell transcriptome atlas of marsupial embryogenesis and X inactivation. | 2020-08-19 | 10.1038/s41586-020-2629-6 | view | ||
| Zappia | EMBO Rep. | A cell atlas of adult muscle precursors uncovers early events in fibre-type divergence in Drosophila. | 2020-08-19 | 10.15252/embr.201949555 | view | ||
| Sekula | BMC Bioinformatics | A sparse Bayesian factor model for the construction of gene co-expression networks from single-cell RNA sequencing count data. | 2020-08-18 | 10.1186/s12859-020-03707-y | view | ||
| Francisco | Fluids Barriers CNS | Advancing brain barriers RNA sequencing: guidelines from experimental design to publication. | 2020-08-18 | 10.1186/s12987-020-00207-2 | view | ||
| Aubert | Nat Commun | Gene editing and elimination of latent herpes simplex virus in vivo. | 2020-08-18 | 10.1038/s41467-020-17936-5 | view | ||
| Foster | Development | A single cell RNA-seq resource for early sea urchin development. | 2020-08-18 | 10.1242/dev.191528 | view | ||
| Garcia-Recio | J. Clin. Invest. | FGFR4 regulates tumor subtype differentiation in luminal breast cancer and metastatic disease. | 2020-08-17 | 10.1172/JCI130323 | view | ||
| Koenitzer | Am. J. Respir. Cell Mol. Biol. | Single Nucleus RNASeq Profiling of Mouse Lung: Reduced Dissociation Bias and Improved Rare Cell Type Detection Compared with Single Cell RNASeq. | 2020-08-17 | 10.1165/rcmb.2020-0095MA | view | ||
| Ciccolella | Bioinformatics | Inferring Cancer Progression from Single-Cell Sequencing while Allowing Mutation Losses. | 2020-08-17 | 10.1093/bioinformatics/btaa722 | view | ||
| Imdahl | Nat Microbiol | Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria. | 2020-08-17 | 10.1038/s41564-020-0774-1 | view | ||
| Guo | Nat. Genet. | Single-cell transcriptomics identifies a distinct luminal progenitor cell type in distal prostate invagination tips. | 2020-08-17 | 10.1038/s41588-020-0642-1 | view | ||
| Nip | Genome Res. | RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes. | 2020-08-17 | 10.1101/gr.260174.119 | view | ||
| Liddelow | Trends Immunol. | Microglia and Astrocytes in Disease: Dynamic Duo or Partners in Crime? | 2020-08-17 | 10.1016/j.it.2020.07.006 | view | ||
| Peics | J Vis Exp | Isolation of Adipogenic and Fibro-Inflammatory Stromal Cell Subpopulations from Murine Intra-Abdominal Adipose Depots. | 2020-08-16 | 10.3791/61610 | view | ||
| Nam | Chemometr Intell Lab Syst | hubViz: A Novel Tool for Hub-centric Visualization. | 2020-08-15 | 10.1016/j.chemolab.2020.104071 | view | ||
| Hu | Biochem. Biophys. Res. Commun. | Single-cell RNA sequencing reveals the regenerative potential of thyroid follicular epithelial cells in metastatic thyroid carcinoma. | 2020-08-15 | 10.1016/j.bbrc.2020.06.050 | view | ||
| Wang | Cancer Biol Med | Single-cell RNA-seq reveals the immune escape and drug resistance mechanisms of mantle cell lymphoma. | 2020-08-15 | 10.20892/j.issn.2095-3941.2020.0073 | view | ||
| Li | J Bioinform Comput Biol | Single-cell RNA-seq data clustering: A survey with performance comparison study. | 2020-08-14 | 10.1142/S0219720020400053 | view | ||
| Zhao | Cell Death Dis | XJB-5-131 inhibited ferroptosis in tubular epithelial cells after ischemia-reperfusion injury. | 2020-08-14 | 10.1038/s41419-020-02871-6 | view | ||
| Hong | Nat Commun | Distinct fibroblast subsets regulate lacteal integrity through YAP/TAZ-induced VEGF-C in intestinal villi. | 2020-08-14 | 10.1038/s41467-020-17886-y | view | ||
| Conrad | Commun Biol | Maximizing transcription of nucleic acids with efficient T7 promoters. | 2020-08-14 | 10.1038/s42003-020-01167-x | view | ||
| Peterson | Dis Model Mech | Disturbed NO signalling gives rise to congenital bicuspid aortic valve and aortopathy. | 2020-08-14 | 10.1242/dmm.044990 | view | ||
| Wang | ACS Pharmacol Transl Sci | SARS-CoV-2 Receptor ACE2 Is Enriched in a Subpopulation of Mouse Tongue Epithelial Cells in Nongustatory Papillae but Not in Taste Buds or Embryonic Oral Epithelium. | 2020-08-14 | 10.1021/acsptsci.0c00062 | view | ||
| Wu | Medicine (Baltimore) | Identification of the key gene and pathways associated with osteoarthritis via single-cell RNA sequencing on synovial fibroblasts. | 2020-08-14 | 10.1097/MD.0000000000021707 | view | ||
| Shah | Patterns (N Y) | An Experiment on Ab Initio Discovery of Biological Knowledge from scRNA-Seq Data Using Machine Learning. | 2020-08-14 | 10.1016/j.patter.2020.100071 | view | ||
| Lodish | Exp. Hematol. | Over Sixty Years of Experimental Hematology (Without a License). | 2020-08-13 | 10.1016/j.exphem.2020.08.005 | view | ||
| Martyniuk | Comp. Biochem. Physiol. B, Biochem. Mol. Biol. | Perspectives on transcriptomics in animal physiology studies. | 2020-08-13 | 10.1016/j.cbpb.2020.110490 | view | ||
| Zhou | Nat Commun | Cellular and molecular properties of neural progenitors in the developing mammalian hypothalamus. | 2020-08-13 | 10.1038/s41467-020-17890-2 | view | ||
| Foster | Nat Commun | Elucidating the fundamental fibrotic processes driving abdominal adhesion formation. | 2020-08-13 | 10.1038/s41467-020-17883-1 | view | ||
| Aska | iScience | Single-Cell Sequencing of Mouse Thymocytes Reveals Mutational Landscape Shaped by Replication Errors, Mismatch Repair, and H3K36me3. | 2020-08-13 | 10.1016/j.isci.2020.101452 | view | ||
| Parekh | Am. J. Physiol., Cell Physiol. | Stem Cells and Lung Regeneration. | 2020-08-12 | 10.1152/ajpcell.00036.2020 | view | ||
| Liu | Int J Mol Sci | Visualizing Single-Cell RNA-seq Data with Semisupervised Principal Component Analysis. | 2020-08-12 | 10.3390/ijms21165797 | view | ||
| Lebrigand | Nat Commun | High throughput error corrected Nanopore single cell transcriptome sequencing. | 2020-08-12 | 10.1038/s41467-020-17800-6 | view | ||
| Palla | iScience | Latent Factor Modeling of scRNA-Seq Data Uncovers Dysregulated Pathways in Autoimmune Disease Patients. | 2020-08-12 | 10.1016/j.isci.2020.101451 | view | ||
| Zheng | Protein Cell | A human circulating immune cell landscape in aging and COVID-19. | 2020-08-11 | 10.1007/s13238-020-00762-2 | view | ||
| Gillen | Cell Rep | Single-Cell RNA Sequencing of Childhood Ependymoma Reveals Neoplastic Cell Subpopulations That Impact Molecular Classification and Etiology. | 2020-08-11 | 10.1016/j.celrep.2020.108023 | view | ||
| Chen | Cell Rep | Runx2+ Niche Cells Maintain Incisor Mesenchymal Tissue Homeostasis through IGF Signaling. | 2020-08-11 | 10.1016/j.celrep.2020.108007 | view | ||
| Tan | Elife | The role of the NMD factor UPF3B in olfactory sensory neurons. | 2020-08-10 | 10.7554/eLife.57525 | view | ||
| Scharer | Nat Commun | Antibody-secreting cell destiny emerges during the initial stages of B-cell activation. | 2020-08-10 | 10.1038/s41467-020-17798-x | view | ||
| Brandão | J. Leukoc. Biol. | Neuroinflammation at single cell level: What is new? | 2020-08-10 | 10.1002/JLB.3MR0620-035R | view | ||
| Lo | Cancers (Basel) | Single-Cell RNA-seq Reveals Obesity-Induced Alterations in the Brca1-Mutated Mammary Gland Microenvironment. | 2020-08-10 | 10.3390/cancers12082235 | view | ||
| Sun | J. Clin. Endocrinol. Metab. | Sexually dimorphic crosstalk at the maternal-fetal interface. | 2020-08-09 | 10.1210/clinem/dgaa503 | view | ||
| Shangguan | Genomics | Application of single-cell RNA sequencing in embryonic development. | 2020-08-08 | 10.1016/j.ygeno.2020.08.007 | view | ||
| Sawada | Mol. Psychiatry | Developmental excitation-inhibition imbalance underlying psychoses revealed by single-cell analyses of discordant twins-derived cerebral organoids. | 2020-08-07 | 10.1038/s41380-020-0844-z | view | ||
| Wang | Genome Biol. | Integrative analyses of single-cell transcriptome and regulome using MAESTRO. | 2020-08-07 | 10.1186/s13059-020-02116-x | view | ||
| Couturier | Nat Commun | Author Correction: Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy. | 2020-08-07 | 10.1038/s41467-020-17979-8 | view | ||
| Monsanto | Nat Commun | Enhancing myocardial repair with CardioClusters. | 2020-08-07 | 10.1038/s41467-020-17742-z | view | ||
| Maynard | Cell | Therapy-Induced Evolution of Human Lung Cancer Revealed by Single-Cell RNA Sequencing. | 2020-08-07 | 10.1016/j.cell.2020.07.017 | view | ||
| Villanueva | Cell | Finding a Needle in a Haystack: Identification of a Beige Fat Progenitor. | 2020-08-06 | 10.1016/j.cell.2020.07.014 | view | ||
| Theocharidis | Diabetes | Integrated Skin Transcriptomics and Serum Multiplex Assays Reveal Novel Mechanisms of Wound Healing in Diabetic Foot Ulcers. | 2020-08-06 | 10.2337/db20-0188 | view | ||
| Li | J. Am. Soc. Nephrol. | Integration of GWAS Summary Statistics and Gene Expression Reveals Target Cell Types Underlying Kidney Function Traits. | 2020-08-06 | 10.1681/ASN.2020010051 | view | ||
| Tillie | Curr. Opin. Lipidol. | Fibroblasts in atherosclerosis: heterogeneous and plastic participants. | 2020-08-06 | 10.1097/MOL.0000000000000700 | view | ||
| Kortekaas | Cancer Immunol Res | CD39 identifies the CD4+ tumor-specific T cell population in human cancer. | 2020-08-05 | 10.1158/2326-6066.CIR-20-0270 | view | ||
| Lau | Dev. Cell | Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis. | 2020-08-05 | 10.1016/j.devcel.2020.07.018 | view | ||
| Silvin | Cell | Elevated Calprotectin and Abnormal Myeloid Cell Subsets Discriminate Severe from Mild COVID-19. | 2020-08-05 | 10.1016/j.cell.2020.08.002 | view | ||
| Schulte-Schrepping | Cell | Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment. | 2020-08-05 | 10.1016/j.cell.2020.08.001 | 17 | view | |
| Choi | BMC Bioinformatics | scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data. | 2020-08-04 | 10.1186/s12859-020-03700-5 | view | ||
| Brubaker | Sci Signal | An interspecies translation model implicates integrin signaling in infliximab-resistant inflammatory bowel disease. | 2020-08-04 | 10.1126/scisignal.aay3258 | view | ||
| Peng | Gene | Clinical and genomic landscape of hepatocellular carcinoma subtypes with various proportions of nonleukocyte stromal cells. | 2020-08-04 | 10.1016/j.gene.2020.145028 | view | ||
| Wiseman | EBioMedicine | Chronic myelomonocytic leukaemia stem cell transcriptomes anticipate disease morphology and outcome. | 2020-08-04 | 10.1016/j.ebiom.2020.102904 | 1 | view | |
| Lai | Cell Regen | Mapping a mammalian adult adrenal gland hierarchy across species by microwell-seq. | 2020-08-03 | 10.1186/s13619-020-00042-8 | view | ||
| He | Mol Genet Genomic Med | Single-cell RNA sequencing analysis of human kidney reveals the presence of ACE2 receptor: A potential pathway of COVID-19 infection. | 2020-08-03 | 10.1002/mgg3.1442 | 3 | view | |
| Magnusson | Elife | Activation of a neural stem cell transcriptional program in parenchymal astrocytes. | 2020-08-03 | 10.7554/eLife.59733 | view | ||
| Fortelny | Genome Biol. | Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data. | 2020-08-03 | 10.1186/s13059-020-02100-5 | view | ||
| Geistlinger | Cancer Res. | Multi-omic analysis of subtype evolution and heterogeneity in high-grade serous ovarian carcinoma. | 2020-08-03 | 10.1158/0008-5472.CAN-20-0521 | view | ||
| Jiang | Proc. Natl. Acad. Sci. U.S.A. | Multidimensional study of the heterogeneity of leukemia cells in t(8;21) acute myelogenous leukemia identifies the subtype with poor outcome. | 2020-08-03 | 10.1073/pnas.2003900117 | view | ||
| Bergen | Nat. Biotechnol. | Generalizing RNA velocity to transient cell states through dynamical modeling. | 2020-08-03 | 10.1038/s41587-020-0591-3 | view | ||
| Nehar-Belaid | Nat. Immunol. | Mapping systemic lupus erythematosus heterogeneity at the single-cell level. | 2020-08-03 | 10.1038/s41590-020-0743-0 | view | ||
| Corridoni | Nat. Med. | Single-cell atlas of colonic CD8+ T cells in ulcerative colitis. | 2020-08-03 | 10.1038/s41591-020-1003-4 | view | ||
| Tristan | bioRxiv | Robotic High-Throughput Biomanufacturing and Functional Differentiation of Human Pluripotent Stem Cells. | 2020-08-03 | 10.1101/2020.08.03.235242 | view | ||
| Ge | Dev. Dyn. | Two new genetically modified mouse alleles labeling distinct phases of retinal ganglion cell development by fluorescent proteins. | 2020-08-02 | 10.1002/dvdy.233 | view | ||
| Arai | J. Cereb. Blood Flow Metab. | Can oligodendrocyte precursor cells be a therapeutic target for mitigating cognitive decline in cerebrovascular disease? | 2020-08-01 | 10.1177/0271678X20929432 | view | ||
| Chu | Hepatology | The Power of Single Cell Analysis for the Study of Liver Pathobiology. | 2020-08-01 | 10.1002/hep.31485 | view | ||
| Wouters | Nat. Cell Biol. | Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma. | 2020-08-01 | 10.1038/s41556-020-0547-3 | 1 | view | |
| Zolfaghari Emameh | Biol Proced Online | Expansion of Single Cell Transcriptomics Data of SARS-CoV Infection in Human Bronchial Epithelial Cells to COVID-19. | 2020-08-01 | 10.1186/s12575-020-00127-3 | view | ||
| Huang | Theranostics | Stem cell programs in cancer initiation, progression, and therapy resistance. | 2020-08-01 | 10.7150/thno.41648 | view | ||
| Liu | Theranostics | Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection. | 2020-08-01 | 10.7150/thno.48201 | view | ||
| Chittezhath | J. Endocrinol. | TLR4 signals through islet macrophages to alter cytokine secretion during diabetes. | 2020-08-01 | 10.1530/JOE-20-0131 | view | ||
| Macedo | Gigascience | The intersectional genetics landscape for humans. | 2020-08-01 | 10.1093/gigascience/giaa083 | view | ||
| Wlodarczyk | J Oncol | Gaps and Doubts in Search to Recognize Glioblastoma Cellular Origin and Tumor Initiating Cells. | 2020-08-01 | 10.1155/2020/6783627 | view | ||
| Hu | Comput Struct Biotechnol J | Integration of single-cell multi-omics for gene regulatory network inference. | 2020-08-01 | 10.1016/j.csbj.2020.06.033 | view | ||
| Zhou | J Immunol Res | Single-Cell Transcriptome Analysis Profile of Meniscal Tissue Macrophages in Human Osteoarthritis. | 2020-08-01 | 10.1155/2020/8127281 | view | ||
| Fischer | Mol. Syst. Biol. | Predicting antigen specificity of single T cells based on TCR CDR3 regions. | 2020-08-01 | 10.15252/msb.20199416 | view | ||
| Noé | J Immunol Res | The Application of Single-Cell RNA Sequencing in Vaccinology. | 2020-08-01 | 10.1155/2020/8624963 | view | ||
| Zhou | Int. J. Biol. Sci. | Encoding Method of Single-cell Spatial Transcriptomics Sequencing. | 2020-08-01 | 10.7150/ijbs.43887 | view | ||
| de Vries | Front Oncol | Unraveling the Complexity of the Cancer Microenvironment With Multidimensional Genomic and Cytometric Technologies. | 2020-08-01 | 10.3389/fonc.2020.01254 | view | ||
| Regan | NPJ Breast Cancer | Integrating single-cell RNA-sequencing and functional assays to decipher mammary cell states and lineage hierarchies. | 2020-08-01 | 10.1038/s41523-020-00175-8 | view | ||
| Arsenio | Methods Mol. Biol. | Single-Cell Transcriptomics of Immune Cells: Cell Isolation and cDNA Library Generation for scRNA-Seq. | 2020-08-01 | 10.1007/978-1-0716-0802-9_1 | view | ||
| Kleino | Methods Mol. Biol. | The Conjugation of Antibodies for the Simultaneous Detection of Surface Proteins and Transcriptome Analysis at a Single-Cell Level. | 2020-08-01 | 10.1007/978-1-0716-0802-9_3 | view | ||
| Xu | Cell Death Discov | Digestive symptoms of COVID-19 and expression of ACE2 in digestive tract organs. | 2020-08-01 | 10.1038/s41420-020-00307-w | view | ||
| Fu | F1000Res | clustifyr: an R package for automated single-cell RNA sequencing cluster classification. | 2020-08-01 | 10.12688/f1000research.22969.1 | view | ||
| Wazny | Open Biol | Vascular underpinning of COVID-19. | 2020-08-01 | 10.1098/rsob.200208 | view | ||
| Centonze | Nature | Heterotypic cell-cell communication regulates glandular stem cell multipotency. | 2020-08-01 | 10.1038/s41586-020-2632-y | view | ||
| Kreimann | Front Immunol | Ischemia Reperfusion Injury Triggers CXCL13 Release and B-Cell Recruitment After Allogenic Kidney Transplantation. | 2020-08-01 | 10.3389/fimmu.2020.01204 | view | ||
| Fastrès | Front Immunol | Characterization of the Bronchoalveolar Lavage Fluid by Single Cell Gene Expression Analysis in Healthy Dogs: A Promising Technique. | 2020-08-01 | 10.3389/fimmu.2020.01707 | view | ||
| Wu | Front Immunol | Redefining Tumor-Associated Macrophage Subpopulations and Functions in the Tumor Microenvironment. | 2020-08-01 | 10.3389/fimmu.2020.01731 | view | ||
| Chen | Front Genet | Single-Cell Transcriptome Analysis Reveals Six Subpopulations Reflecting Distinct Cellular Fates in Senescent Mouse Embryonic Fibroblasts. | 2020-08-01 | 10.3389/fgene.2020.00867 | view | ||
| Hao | Adv. Exp. Med. Biol. | Neural Regulation of Feeding Behavior. | 2020-08-01 | 10.1007/978-981-15-7086-5_3 | view | ||
| Na | Theranostics | Reciprocal change in Glucose metabolism of Cancer and Immune Cells mediated by different Glucose Transporters predicts Immunotherapy response. | 2020-08-01 | 10.7150/thno.48954 | view | ||
| Sheng | Sci Adv | Social reprogramming in ants induces longevity-associated glia remodeling. | 2020-08-01 | 10.1126/sciadv.aba9869 | view | ||
| Lee | Immune Netw | Effects of Cryopreservation and Thawing on Single-Cell Transcriptomes of Human T Cells. | 2020-08-01 | 10.4110/in.2020.20.e34 | view | ||
| Zhang | Ann Transl Med | Identification of hub genes in diabetic kidney disease via multiple-microarray analysis. | 2020-08-01 | 10.21037/atm-20-5171 | view | ||
| Zou | Ann Transl Med | Percutaneous liver biopsy: another option of hepatic sample collection approach in single-cell sequencing studies? | 2020-08-01 | 10.21037/atm.2020.04.23 | view | ||
| Ge | J. Am. Soc. Nephrol. | LIM-Nebulette Reinforces Podocyte Structural Integrity by Linking Actin and Vimentin Filaments. | 2020-07-31 | 10.1681/ASN.2019121261 | view | ||
| Smits | Cell Tissue Res. | Single-cell transcriptomics reveals multiple neuronal cell types in human midbrain-specific organoids. | 2020-07-31 | 10.1007/s00441-020-03249-y | view | ||
| Rassek | Cancers (Basel) | Single-Cell Heterogeneity of Cutaneous T-Cell Lymphomas Revealed Using RNA-Seq Technologies. | 2020-07-31 | 10.3390/cancers12082129 | view | ||
| Abbasi | Cell Stem Cell | Distinct Regulatory Programs Control the Latent Regenerative Potential of Dermal Fibroblasts during Wound Healing. | 2020-07-31 | 10.1016/j.stem.2020.07.008 | view | ||
| Brann | Sci Adv | Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia. | 2020-07-31 | 10.1126/sciadv.abc5801 | view | ||
| Melton | Bioinformatics | Discovering a sparse set of pairwise discriminating features in high dimensional data. | 2020-07-30 | 10.1093/bioinformatics/btaa690 | view | ||
| Xin | Genome Biol. | GMM-Demux: sample demultiplexing, multiplet detection, experiment planning, and novel cell-type verification in single cell sequencing. | 2020-07-30 | 10.1186/s13059-020-02084-2 | view | ||
| Crosby | Clin. Cancer Res. | Stimulation of Oncogene-Specific Tumor-Infiltrating T Cells through Combined Vaccine and αPD-1 Enable Sustained Antitumor Responses against Established HER2 Breast Cancer. | 2020-07-30 | 10.1158/1078-0432.CCR-20-0389 | view | ||
| Yao | Nat Commun | Histone deacetylase 3 controls lung alveolar macrophage development and homeostasis. | 2020-07-30 | 10.1038/s41467-020-17630-6 | view | ||
| Van Hove | Diabetologia | Single-cell transcriptome analysis of the Akimba mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy. | 2020-07-30 | 10.1007/s00125-020-05218-0 | view | ||
| Avrahami | Mol Metab | Single cell transcriptomics of human islet ontogeny defines the molecular basis of β cell dedifferentiation in T2D. | 2020-07-30 | 10.1016/j.molmet.2020.101057 | view | ||
| Gruber | Immunity | Complex Autoinflammatory Syndrome Unveils Fundamental Principles of JAK1 Kinase Transcriptional and Biochemical Function. | 2020-07-30 | 10.1016/j.immuni.2020.07.006 | view | ||
| Zamboni | Cell Stem Cell | A Widespread Neurogenic Potential of Neocortical Astrocytes Is Induced by Injury. | 2020-07-30 | 10.1016/j.stem.2020.07.006 | view | ||
| Gao | bioRxiv | SARS-CoV-2 Spike Protein Interacts with Multiple Innate Immune Receptors. | 2020-07-30 | 10.1101/2020.07.29.227462 | view | ||
| McLellan | Circulation | High-Resolution Transcriptomic Profiling of the Heart During Chronic Stress Reveals Cellular Drivers of Cardiac Fibrosis and Hypertrophy. | 2020-07-30 | 10.1161/CIRCULATIONAHA.119.045115 | view | ||
| Zhang | J Cachexia Sarcopenia Muscle | Age-related decline of interferon-gamma responses in macrophage impairs satellite cell proliferation and regeneration. | 2020-07-29 | 10.1002/jcsm.12584 | view | ||
| Dong | Bioinformatics | netAE: Semi-supervised dimensionality reduction of single-cell RNA sequencing to facilitate cell labeling. | 2020-07-29 | 10.1093/bioinformatics/btaa669 | view | ||
| Zuo | Respir. Res. | Cell-specific expression of lung disease risk-related genes in the human small airway epithelium. | 2020-07-29 | 10.1186/s12931-020-01442-9 | view | ||
| Lemme-Dumit | mSphere | mSphere of Influence: Organoids and Single-Cell Sequencing, a Powerful Combination To Uncover Epithelial and Immune Cell Interactions in the Human Gut Environment. | 2020-07-29 | 10.1128/mSphere.00722-20 | view | ||
| Lee | Proc. Natl. Acad. Sci. U.S.A. | Single-cell RNA-seq analysis revealed long-lasting adverse effects of tamoxifen on neurogenesis in prenatal and adult brains. | 2020-07-29 | 10.1073/pnas.1918883117 | view | ||
| Muciño-Olmos | Sci Rep | Unveiling functional heterogeneity in breast cancer multicellular tumor spheroids through single-cell RNA-seq. | 2020-07-29 | 10.1038/s41598-020-69026-7 | view | ||
| Aragona | Nature | Mechanisms of stretch-mediated skin expansion at single-cell resolution. | 2020-07-29 | 10.1038/s41586-020-2555-7 | view | ||
| Grosswendt | Nature | Epigenetic regulator function through mouse gastrulation. | 2020-07-29 | 10.1038/s41586-020-2552-x | view | ||
| Selmi | Clin Rev Allergy Immunol | Autoimmunity in 2019. | 2020-07-29 | 10.1007/s12016-020-08808-3 | view | ||
| Wattrus | Zebrafish | A Transgenic System for Rapid Magnetic Enrichment of Rare Embryonic Cells. | 2020-07-29 | 10.1089/zeb.2020.1904 | view | ||
| Choi | Cell Stem Cell | Inflammatory Signals Induce AT2 Cell-Derived Damage-Associated Transient Progenitors that Mediate Alveolar Regeneration. | 2020-07-29 | 10.1016/j.stem.2020.06.020 | view | ||
| Iwanaga | Am. J. Respir. Crit. Care Med. | Spelunking in Sputum: Single Cell RNA Sequencing Sheds New Insights into Cystic Fibrosis. | 2020-07-28 | 10.1164/rccm.202006-2456ED | view | ||
| León-Rivera | mBio | Interactions of Monocytes, HIV, and ART Identified by an Innovative scRNAseq Pipeline: Pathways to Reservoirs and HIV-Associated Comorbidities. | 2020-07-28 | 10.1128/mBio.01037-20 | view | ||
| Sheng | Cell Rep | Cycling Stem Cells Are Radioresistant and Regenerate the Intestine. | 2020-07-28 | 10.1016/j.celrep.2020.107952 | view | ||
| Ravasz | Cereb. Cortex | Cell Surface Protein mRNAs Show Differential Transcription in Pyramidal and Fast-Spiking Cells as Revealed by Single-Cell Sequencing. | 2020-07-27 | 10.1093/cercor/bhaa195 | view | ||
| Zhao | FASEB J. | Single-cell RNA sequencing reveals the landscape of early female germ cell development. | 2020-07-27 | 10.1096/fj.202001034RR | view | ||
| Zheng | PLoS Comput. Biol. | scPADGRN: A preconditioned ADMM approach for reconstructing dynamic gene regulatory network using single-cell RNA sequencing data. | 2020-07-27 | 10.1371/journal.pcbi.1007471 | view | ||
| Choi | Genome Biol. | Bayesian model selection reveals biological origins of zero inflation in single-cell transcriptomics. | 2020-07-27 | 10.1186/s13059-020-02103-2 | view | ||
| He | J Hematol Oncol | Proteolysis targeting chimeras (PROTACs) are emerging therapeutics for hematologic malignancies. | 2020-07-27 | 10.1186/s13045-020-00924-z | view | ||
| Fei | Cell Death Dis | High-dimensional single-cell analysis delineates radiofrequency ablation induced immune microenvironmental remodeling in pancreatic cancer. | 2020-07-27 | 10.1038/s41419-020-02787-1 | view | ||
| Xie | Nat. Immunol. | Single-cell transcriptome profiling reveals neutrophil heterogeneity in homeostasis and infection. | 2020-07-27 | 10.1038/s41590-020-0736-z | view | ||
| Zarei | Lab. Invest. | Early pathogenesis of cystic fibrosis gallbladder disease in a porcine model. | 2020-07-27 | 10.1038/s41374-020-0474-8 | view | ||
| Salahudeen | bioRxiv | Progenitor identification and SARS-CoV-2 infection in long-term human distal lung organoid cultures. | 2020-07-27 | 10.1101/2020.07.27.212076 | view | ||
| Li | J Genet Genomics | Landscape of transcript isoforms in single T cells infiltrating in non-small-cell lung cancer. | 2020-07-27 | 10.1016/j.jgg.2020.06.006 | view | ||
| Iqbal | Cytometry A | Status and Potential of Single-cell Transcriptomics for Understanding Plant Development and Functional Biology. | 2020-07-26 | 10.1002/cyto.a.24196 | view | ||
| Boroughs | Mol. Ther. | A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-Seq. | 2020-07-25 | 10.1016/j.ymthe.2020.07.023 | view | ||
| Atamian | Semin. Cell Dev. Biol. | Taming human brain organoids one cell at a time. | 2020-07-24 | 10.1016/j.semcdb.2020.05.022 | view | ||
| Yao | medRxiv | Cell type-specific immune dysregulation in severely ill COVID-19 patients. | 2020-07-24 | 10.1101/2020.07.23.20161182 | view | ||
| Pedroza | Arterioscler. Thromb. Vasc. Biol. | Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm. | 2020-07-23 | 10.1161/ATVBAHA.120.314670 | view | ||
| Guo | Cancer Med | TOX correlates with prognosis, immune infiltration, and T cells exhaustion in lung adenocarcinoma. | 2020-07-23 | 10.1002/cam4.3324 | view | ||
| Peyvandipour | Sci Rep | Identification of cell types from single cell data using stable clustering. | 2020-07-23 | 10.1038/s41598-020-66848-3 | view | ||
| Manresa | Gastroenterology | Increased Production of LIGHT by T Cells in Eosinophilic Esophagitis Promotes Differentiation of Esophageal Fibroblasts Toward an Inflammatory Phenotype. | 2020-07-23 | 10.1053/j.gastro.2020.07.035 | view | ||
| Dubois | J. Invest. Dermatol. | Defining the Skin Cellular Community Using Single-Cell Genomics to Advance Precision Medicine. | 2020-07-23 | 10.1016/j.jid.2020.05.104 | view | ||
| Giadone | Stem Cell Reports | Expression of Amyloidogenic Transthyretin Drives Hepatic Proteostasis Remodeling in an Induced Pluripotent Stem Cell Model of Systemic Amyloid Disease. | 2020-07-23 | 10.1016/j.stemcr.2020.07.003 | view | ||
| An | bioRxiv | Single-dose intranasal vaccination elicits systemic and mucosal immunity against SARS-CoV-2. | 2020-07-23 | 10.1101/2020.07.23.212357 | view | ||
| Fung | J. Neurogenet. | Cell-type-specific promoters for C. elegans glia. | 2020-07-22 | 10.1080/01677063.2020.1781851 | view | ||
| Song | Genome Biol. | Single-cell RNA-seq analysis reveals ploidy-dependent and cell-specific transcriptome changes in Arabidopsis female gametophytes. | 2020-07-22 | 10.1186/s13059-020-02094-0 | view | ||
| Townes | Genome Biol. | Author Correction: Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model. | 2020-07-22 | 10.1186/s13059-020-02109-w | view | ||
| Genome Res. | Parallel bimodal single-cell sequencing of transcriptome and chromatin accessibility. | 2020-07-22 | 10.1101/gr.257840.119 | view | |||
| Gupta | Cells | Biological and Medical Importance of Cellular Heterogeneity Deciphered by Single-Cell RNA Sequencing. | 2020-07-22 | 10.3390/cells9081751 | view | ||
| He | Ocul Surf | Tissue engineered corneal epithelium derived from clinical-grade human embryonic stem cells. | 2020-07-22 | 10.1016/j.jtos.2020.07.009 | view | ||
| Cai | Circ. Res. | Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis. | 2020-07-21 | 10.1161/CIRCRESAHA.119.316470 | view | ||
| Carraro | Am. J. Respir. Crit. Care Med. | Single Cell Reconstruction of Human Basal Cell Diversity in Normal and IPF Lung. | 2020-07-21 | 10.1164/rccm.201904-0792OC | 2 | view | |
| Verma | BMC Bioinformatics | A robust nonlinear low-dimensional manifold for single cell RNA-seq data. | 2020-07-21 | 10.1186/s12859-020-03625-z | view | ||
| Michel | Cell Rep | Maturational Changes in Mouse Cutaneous Touch and Piezo2-Mediated Mechanotransduction. | 2020-07-21 | 10.1016/j.celrep.2020.107912 | view | ||
| Martos | Cell Rep Med | Single-cell analyses identify dysfunctional CD16+ CD8 T cells in smokers. | 2020-07-21 | 10.1016/j.xcrm.2020.100054 | view | ||
| Zagozewski | Nat Commun | An OTX2-PAX3 signaling axis regulates Group 3 medulloblastoma cell fate. | 2020-07-20 | 10.1038/s41467-020-17357-4 | view | ||
| Chen | Cell Res. | Single-cell transcriptomics reveals regulators underlying immune cell diversity and immune subtypes associated with prognosis in nasopharyngeal carcinoma. | 2020-07-20 | 10.1038/s41422-020-0374-x | view | ||
| Wang | Cell Res. | Comparative analysis of cell lineage differentiation during hepatogenesis in humans and mice at the single-cell transcriptome level. | 2020-07-20 | 10.1038/s41422-020-0378-6 | view | ||
| Abbas | Nat. Immunol. | The activation trajectory of plasmacytoid dendritic cells in vivo during a viral infection. | 2020-07-20 | 10.1038/s41590-020-0731-4 | view | ||
| Skinnider | Nat. Biotechnol. | Cell type prioritization in single-cell data. | 2020-07-20 | 10.1038/s41587-020-0605-1 | view | ||
| Legouis | Nat Metab | Altered proximal tubular cell glucose metabolism during acute kidney injury is associated with mortality. | 2020-07-20 | 10.1038/s42255-020-0238-1 | view | ||
| Garman | Curr Opin Pulm Med | Recent advances in sarcoidosis genomics: epigenetics, gene expression, and gene by environment (G × E) interaction studies. | 2020-07-20 | 10.1097/MCP.0000000000000719 | view | ||
| Pasciuto | Cell | Microglia Require CD4 T Cells to Complete the Fetal-to-Adult Transition. | 2020-07-20 | 10.1016/j.cell.2020.06.026 | 1 | view | |
| Abplanalp | Nucleic Acid Ther | Efficiency and Target Derepression of Anti-miR-92a: Results of a First in Human Study. | 2020-07-20 | 10.1089/nat.2020.0871 | view | ||
| Cochrane | J. Pathol. | Single cell transcriptomes of normal endometrial derived organoids uncover novel cell type markers and cryptic differentiation of primary tumours. | 2020-07-19 | 10.1002/path.5511 | view | ||
| Zhang | Aging (Albany NY) | PDIA3 correlates with clinical malignant features and immune signature in human gliomas. | 2020-07-19 | 10.18632/aging.103601 | view | ||
| Lavker | Exp. Eye Res. | Corneal epithelial biology: Lessons stemming from old to new. | 2020-07-19 | 10.1016/j.exer.2020.108094 | view | ||
| Zhu | Immunity | Single-Cell Sequencing of Peripheral Mononuclear Cells Reveals Distinct Immune Response Landscapes of COVID-19 and Influenza Patients. | 2020-07-19 | 10.1016/j.immuni.2020.07.009 | view | ||
| Moudgil | Cell | Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells. | 2020-07-18 | 10.1016/j.cell.2020.06.037 | view | ||
| Zernecke | Circ. Res. | Meta-Analysis of Leukocyte Diversity in Atherosclerotic Mouse Aortas. | 2020-07-17 | 10.1161/CIRCRESAHA.120.316903 | view | ||
| Alencar | Circulation | The Stem Cell Pluripotency Genes Klf4 and Oct4 Regulate Complex SMC Phenotypic Changes Critical in Late-Stage Atherosclerotic Lesion Pathogenesis. | 2020-07-17 | 10.1161/CIRCULATIONAHA.120.046672 | view | ||
| Chi | Science | Cancer cells deploy lipocalin-2 to collect limiting iron in leptomeningeal metastasis. | 2020-07-17 | 10.1126/science.aaz2193 | 2 | view | |
| Zhao | Cardiovasc. Res. | Single cell RNA sequencing reveals the cellular heterogeneity of aneurysmal infrarenal abdominal aorta. | 2020-07-17 | 10.1093/cvr/cvaa214 | view | ||
| Mahata | Nat Commun | Tumors induce de novo steroid biosynthesis in T cells to evade immunity. | 2020-07-17 | 10.1038/s41467-020-17339-6 | 1 | view | |
| Bao | Cancer Immunol. Immunother. | Integrated analysis of single-cell RNA-seq and bulk RNA-seq unravels tumour heterogeneity plus M2-like tumour-associated macrophage infiltration and aggressiveness in TNBC. | 2020-07-17 | 10.1007/s00262-020-02669-7 | view | ||
| Han | Protein Cell | Bi-FoRe: an efficient bidirectional knockin strategy to generate pairwise conditional alleles with fluorescent indicators. | 2020-07-17 | 10.1007/s13238-020-00747-1 | view | ||
| Orange | N. Engl. J. Med. | RNA Identification of PRIME Cells Predicting Rheumatoid Arthritis Flares. | 2020-07-16 | 10.1056/NEJMoa2004114 | view | ||
| Huber | J. Clin. Invest. | Immobilization after injury alters extracellular matrix and stem cell fate. | 2020-07-16 | 10.1172/JCI136142 | view | ||
| Aguiar | Eur. Respir. J. | Gene expression and in situ protein profiling of candidate SARS-CoV-2 receptors in human airway epithelial cells and lung tissue. | 2020-07-16 | 10.1183/13993003.01123-2020 | view | ||
| Strunz | Nat Commun | Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis. | 2020-07-16 | 10.1038/s41467-020-17358-3 | view | ||
| Deng | Cancers (Basel) | Cylindromatosis Lysine 63 Deubiquitinase (CYLD) Regulates NF-kB Signaling Pathway and Modulates Fibroblast and Endothelial Cells Recruitment in Nasopharyngeal Carcinoma. | 2020-07-16 | 10.3390/cancers12071924 | view | ||
| Eyler | Genome Biol. | Single-cell lineage analysis reveals genetic and epigenetic interplay in glioblastoma drug resistance. | 2020-07-15 | 10.1186/s13059-020-02085-1 | view | ||
| Malone | J. Am. Soc. Nephrol. | Harnessing Expressed Single Nucleotide Variation and Single Cell RNA Sequencing To Define Immune Cell Chimerism in the Rejecting Kidney Transplant. | 2020-07-15 | 10.1681/ASN.2020030326 | view | ||
| Tiklová | Nat Commun | Author Correction: Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson's disease. | 2020-07-15 | 10.1038/s41467-020-17421-z | view | ||
| Rodriguez-Fraticelli | Nature | Single-cell lineage tracing unveils a role for TCF15 in haematopoiesis. | 2020-07-15 | 10.1038/s41586-020-2503-6 | view | ||
| Schaum | Nature | Ageing hallmarks exhibit organ-specific temporal signatures. | 2020-07-15 | 10.1038/s41586-020-2499-y | view | ||
| Hao | J. Assist. Reprod. Genet. | Culture of human ovarian tissue in xeno-free conditions using laminin components of the human ovarian extracellular matrix. | 2020-07-15 | 10.1007/s10815-020-01886-4 | view | ||
| Haftbaradaran Esfahani | Biophys Rev | Cell shape: effects on gene expression and signaling. | 2020-07-15 | 10.1007/s12551-020-00722-4 | view | ||
| Pfefferlé | J. Clin. Invest. | Hemolysis transforms liver macrophages into anti-inflammatory erythrophagocytes. | 2020-07-14 | 10.1172/JCI137282 | view | ||
| Loeuillard | J. Clin. Invest. | Targeting tumor-associated macrophages and granulocytic-myeloid-derived suppressor cells augments pd-1 blockade in cholangiocarcinoma. | 2020-07-14 | 10.1172/JCI137110 | view | ||
| Arroyo Hornero | Commun Biol | CD70 expression determines the therapeutic efficacy of expanded human regulatory T cells. | 2020-07-14 | 10.1038/s42003-020-1097-8 | view | ||
| Chen | Genes (Basel) | Integrating Deep Supervised, Self-Supervised and Unsupervised Learning for Single-Cell RNA-seq Clustering and Annotation. | 2020-07-14 | 10.3390/genes11070792 | view | ||
| Smith | Curr. Opin. Neurobiol. | New light on cortical neuropeptides and synaptic network plasticity. | 2020-07-14 | 10.1016/j.conb.2020.04.002 | view | ||
| Li | Curr. Opin. Genet. Dev. | Lessons from single cell sequencing in CNS cell specification and function. | 2020-07-14 | 10.1016/j.gde.2020.05.043 | view | ||
| Green | Oncogene | Targeting the MAPK7/MMP9 axis for metastasis in primary bone cancer. | 2020-07-13 | 10.1038/s41388-020-1379-0 | view | ||
| Liu | J. Cell. Physiol. | Weighted gene co-expression network analysis can sort cancer-associated fibroblast-specific markers promoting bladder cancer progression. | 2020-07-13 | 10.1002/jcp.29939 | view | ||
| Yang | Clin Transl Med | Analysis of single-cell RNAseq identifies transitional states of T cells associated with hepatocellular carcinoma. | 2020-07-13 | 10.1002/ctm2.133 | view | ||
| Tan | Proc. Natl. Acad. Sci. U.S.A. | Transcriptome profiling reveals signaling conditions dictating human spermatogonia fate in vitro. | 2020-07-13 | 10.1073/pnas.2000362117 | view | ||
| Kobayashi | Nat. Cell Biol. | Persistence of a regeneration-associated, transitional alveolar epithelial cell state in pulmonary fibrosis. | 2020-07-13 | 10.1038/s41556-020-0542-8 | view | ||
| Sacher | Cancer Cell | Cytotoxic CD4+ T Cells in Bladder Cancer-A New License to Kill. | 2020-07-13 | 10.1016/j.ccell.2020.06.013 | view | ||
| Gojo | Cancer Cell | Single-Cell RNA-Seq Reveals Cellular Hierarchies and Impaired Developmental Trajectories in Pediatric Ependymoma. | 2020-07-13 | 10.1016/j.ccell.2020.06.004 | view | ||
| Ding | Cancer Commun (Lond) | Single-cell RNA sequencing in breast cancer: Understanding tumor heterogeneity and paving roads to individualized therapy. | 2020-07-12 | 10.1002/cac2.12078 | view | ||
| Zhong | Clin Transl Oncol | Immune cell infiltration features and related marker genes in lung cancer based on single-cell RNA-seq. | 2020-07-12 | 10.1007/s12094-020-02435-2 | view | ||
| He | Genome Biol. | DISC: a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning. | 2020-07-10 | 10.1186/s13059-020-02083-3 | view | ||
| Vanarsa | Ann. Rheum. Dis. | Quantitative planar array screen of 1000 proteins uncovers novel urinary protein biomarkers of lupus nephritis. | 2020-07-10 | 10.1136/annrheumdis-2019-216312 | view | ||
| Lee | Sci Immunol | Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19. | 2020-07-10 | 10.1126/sciimmunol.abd1554 | view | ||
| Wineberg | J. Am. Soc. Nephrol. | Single-Cell RNA Sequencing Reveals mRNA Splice Isoform Switching during Kidney Development. | 2020-07-10 | 10.1681/ASN.2019080770 | view | ||
| Chung | J. Am. Soc. Nephrol. | Single-Cell Transcriptome Profiling of the Kidney Glomerulus Identifies Key Cell Types and Reactions to Injury. | 2020-07-10 | 10.1681/ASN.2020020220 | view | ||
| Cao | Nat Commun | Searching large-scale scRNA-seq databases via unbiased cell embedding with Cell BLAST. | 2020-07-10 | 10.1038/s41467-020-17281-7 | view | ||
| Cuarental | J Clin Med | Tacrolimus Prevents TWEAK-Induced PLA2R Expression in Cultured Human Podocytes. | 2020-07-10 | 10.3390/jcm9072178 | view | ||
| Vieira | JCI Insight | Selective LXR agonist DMHCA corrects retinal and bone marrow dysfunction in type 2 diabetes. | 2020-07-09 | 10.1172/jci.insight.137230 | view | ||
| Fang | Anal. Chem. | A single-cell multimodal analytical approach by integrating Raman optical tweezers and RNA sequencing. | 2020-07-09 | 10.1021/acs.analchem.0c00912 | view | ||
| Chen | Environ. Sci. Technol. | Single-cell sequencing reveals heterogeneity effects of bisphenol A on zebrafish embryonic development. | 2020-07-09 | 10.1021/acs.est.0c02428 | view | ||
| Tsoi | JCI Insight | IL-18-containing five-gene signature distinguishes histologically identical dermatomyositis and lupus erythematosus skin lesions. | 2020-07-09 | 10.1172/jci.insight.139558 | view | ||
| Liu | Genome Biol. | Genome-wide studies reveal the essential and opposite roles of ARID1A in controlling human cardiogenesis and neurogenesis from pluripotent stem cells. | 2020-07-09 | 10.1186/s13059-020-02082-4 | view | ||
| Klimovich | Proc. Natl. Acad. Sci. U.S.A. | Prototypical pacemaker neurons interact with the resident microbiota. | 2020-07-09 | 10.1073/pnas.1920469117 | view | ||
| Ellison | Pancreas | Complex Genetics in Pancreatitis: Insights Gained From a New Candidate Locus Panel. | 2020-07-09 | 10.1097/MPA.0000000000001612 | view | ||
| Edil | BMC Med | Genomic and single cell sequencing facilitate the dissection of heterogeneity of pancreatic tumors. | 2020-07-08 | 10.1186/s12916-020-01637-3 | view | ||
| Hou | Zygote | Maternal ageing causes changes in DNA methylation and gene expression profiles in mouse oocytes. | 2020-07-08 | 10.1017/S0967199420000143 | view | ||
| Abplanalp | JAMA Cardiol | Association of Clonal Hematopoiesis of Indeterminate Potential With Inflammatory Gene Expression in Patients With Severe Degenerative Aortic Valve Stenosis or Chronic Postischemic Heart Failure. | 2020-07-08 | 10.1001/jamacardio.2020.2468 | view | ||
| Can | BMC Genomics | Comparative analysis of single-cell transcriptomics in human and Zebrafish oocytes. | 2020-07-08 | 10.1186/s12864-020-06860-z | view | ||
| Patrick | Genome Biol. | Sierra: discovery of differential transcript usage from polyA-captured single-cell RNA-seq data. | 2020-07-08 | 10.1186/s13059-020-02071-7 | view | ||
| Starostik | Genome Res. | Single-cell analysis of human embryos reveals diverse patterns of aneuploidy and mosaicism. | 2020-07-08 | 10.1101/gr.262774.120 | view | ||
| Couturier | Nat Commun | Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy. | 2020-07-08 | 10.1038/s41467-020-17186-5 | view | ||
| Cho | J Cachexia Sarcopenia Muscle | Single-cell deconstruction of post-sepsis skeletal muscle and adipose tissue microenvironments. | 2020-07-08 | 10.1002/jcsm.12596 | view | ||
| Pérez | Mol. Psychiatry | Loss of function of the mitochondrial peptidase PITRM1 induces proteotoxic stress and Alzheimer's disease-like pathology in human cerebral organoids. | 2020-07-07 | 10.1038/s41380-020-0807-4 | view | ||
| Fonseca Costa | Brief Funct Genomics | Single-cell transcriptomics allows novel insights into aging and circadian processes. | 2020-07-07 | 10.1093/bfgp/elaa014 | view | ||
| Frost | Nucleic Acids Res. | Variance-adjusted Mahalanobis (VAM): a fast and accurate method for cell-specific gene set scoring. | 2020-07-07 | 10.1093/nar/gkaa582 | view | ||
| Beisang | Sci Rep | Single-cell RNA sequencing reveals that lung mesenchymal progenitor cells in IPF exhibit pathological features early in their differentiation trajectory. | 2020-07-07 | 10.1038/s41598-020-66630-5 | view | ||
| Song | Int. J. Cancer | Cellular Heterogeneity Landscape in Laryngeal Squamous Cell Carcinoma. | 2020-07-07 | 10.1002/ijc.33192 | view | ||
| Holmes | Cell Rep | Integrated Transcriptome and Network Analysis Reveals Spatiotemporal Dynamics of Calvarial Suturogenesis. | 2020-07-07 | 10.1016/j.celrep.2020.107871 | view | ||
| Jackson | Cell Rep | Single-Cell and Population Transcriptomics Reveal Pan-epithelial Remodeling in Type 2-High Asthma. | 2020-07-07 | 10.1016/j.celrep.2020.107872 | view | ||
| Qu | Cell Rep | Baseline Frequency of Inflammatory Cxcl9-Expressing Tumor-Associated Macrophages Predicts Response to Avelumab Treatment. | 2020-07-07 | 10.1016/j.celrep.2020.107873 | view | ||
| Renand | J. Hepatol. | Integrative molecular profiling of autoreactive CD4 T cells in autoimmune hepatitis. | 2020-07-07 | 10.1016/j.jhep.2020.05.053 | view | ||
| Terabayashi | Cell. Signal. | Pathway identification through transcriptome analysis. | 2020-07-07 | 10.1016/j.cellsig.2020.109701 | view | ||
| De Micheli | Skelet Muscle | A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated muscle stem cell populations. | 2020-07-06 | 10.1186/s13395-020-00236-3 | view | ||
| Li | Cell Regen (Lond) | Comparison of Scanpy-based algorithms to remove the batch effect from single-cell RNA-seq data. | 2020-07-06 | 10.1186/s13619-020-00041-9 | view | ||
| DeSisto | Dev. Cell | Single-Cell Transcriptomic Analyses of the Developing Meninges Reveal Meningeal Fibroblast Diversity and Function. | 2020-07-06 | 10.1016/j.devcel.2020.06.009 | view | ||
| Zhang | Clin Transl Med | How far is single-cell sequencing from clinical application? | 2020-07-05 | 10.1002/ctm2.117 | view | ||
| Deutsch | Int J Mol Sci | The Impact of Single-Cell Genomics on Adipose Tissue Research. | 2020-07-05 | 10.3390/ijms21134773 | view | ||
| Li | Gene | Single cell sequencing revealed the underlying pathogenesis of the development of osteoarthritis. | 2020-07-05 | 10.1016/j.gene.2020.144939 | view | ||
| Matsuda | Food Chem. Toxicol. | The liver fibrosis niche: Novel insights into the interplay between fibrosis-composing mesenchymal cells, immune cells, endothelial cells, and extracellular matrix. | 2020-07-05 | 10.1016/j.fct.2020.111556 | view | ||
| Alexander | Glia | Multimodal single-cell analysis reveals distinct radioresistant stem-like and progenitor cell populations in murine glioma. | 2020-07-04 | 10.1002/glia.23866 | view | ||
| Ji | Genome Biol. | Single-cell ATAC-seq signal extraction and enhancement with SCATE. | 2020-07-03 | 10.1186/s13059-020-02075-3 | view | ||
| Townes | Genome Biol. | Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers. | 2020-07-03 | 10.1186/s13059-020-02078-0 | view | ||
| Alvarez | Sci Rep | Enhancing droplet-based single-nucleus RNA-seq resolution using the semi-supervised machine learning classifier DIEM. | 2020-07-03 | 10.1038/s41598-020-67513-5 | view | ||
| Su | Bioinformatics | Simulation, Power Evaluation, and Sample Size Recommendation for Single Cell RNA-seq. | 2020-07-02 | 10.1093/bioinformatics/btaa607 | view | ||
| Fidanza | Blood | Single cell analyses and machine learning define hematopoietic progenitor and HSC-like cells derived from human PSCs. | 2020-07-02 | 10.1182/blood.2020006229 | view | ||
| Southard-Smith | BMC Genomics | Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms. | 2020-07-02 | 10.1186/s12864-020-06843-0 | view | ||
| Chou | Sci Rep | Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis. | 2020-07-02 | 10.1038/s41598-020-67730-y | view | ||
| Patir | Sci Rep | The transcriptional signature associated with human motile cilia. | 2020-07-02 | 10.1038/s41598-020-66453-4 | view | ||
| Tikhonova | Cell Stem Cell | Cell-by-Cell Deconstruction of Stem Cell Niches. | 2020-07-02 | 10.1016/j.stem.2020.06.013 | view | ||
| Strong | Bone | Small molecule inhibition of non-canonical (TAK1-mediated) BMP signaling results in reduced chondrogenic ossification and heterotopic ossification in a rat model of blast-associated combat-related lower limb trauma. | 2020-07-02 | 10.1016/j.bone.2020.115517 | view | ||
| Esaulova | Neurol Neuroimmunol Neuroinflamm | Single-cell RNA-seq analysis of human CSF microglia and myeloid cells in neuroinflammation. | 2020-07-01 | 10.1212/NXI.0000000000000732 | view | ||
| Zhang | Cell Biol. Toxicol. | Single-cell sequencing reveals novel mechanisms of Aflatoxin B1-induced hepatotoxicity in S phase-arrested L02 cells. | 2020-07-01 | 10.1007/s10565-020-09547-z | view | ||
| Meng | Bioinformatics | GPress: a framework for querying General Feature Format (GFF) files and expression files in a compressed form. | 2020-07-01 | 10.1093/bioinformatics/btaa604 | view | ||
| Niebler | BMC Bioinformatics | RainDrop: Rapid activation matrix computation for droplet-based single-cell RNA-seq reads. | 2020-07-01 | 10.1186/s12859-020-03593-4 | view | ||
| Canu | Genome Biol. | Analysis of endothelial-to-haematopoietic transition at the single cell level identifies cell cycle regulation as a driver of differentiation. | 2020-07-01 | 10.1186/s13059-020-02058-4 | view | ||
| Luo | Cancer Discov | Utility of Human-Derived Models for Glioblastoma. | 2020-07-01 | 10.1158/2159-8290.CD-20-0493 | view | ||
| Zhang | Cell. Mol. Immunol. | The history and advances in cancer immunotherapy: understanding the characteristics of tumor-infiltrating immune cells and their therapeutic implications. | 2020-07-01 | 10.1038/s41423-020-0488-6 | view | ||
| Song | Nat Commun | Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction. | 2020-07-01 | 10.1038/s41467-020-16905-2 | view | ||
| Liang | Bioinformatics | BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization. | 2020-07-01 | 10.1093/bioinformatics/btz977 | view | ||
| Stanley | Fertil. Steril. | Coronavirus disease-19 and fertility: viral host entry protein expression in male and female reproductive tissues. | 2020-07-01 | 10.1016/j.fertnstert.2020.05.001 | view | ||
| Cardoso | Front Cell Dev Biol | Toward Generating Subtype-Specific Mesencephalic Dopaminergic Neurons in vitro. | 2020-07-01 | 10.3389/fcell.2020.00443 | view | ||
| Sagar | EMBO J. | Deciphering the regulatory landscape of fetal and adult γδ T-cell development at single-cell resolution. | 2020-07-01 | 10.15252/embj.2019104159 | view | ||
| Sadeqi Azer | Bioinformatics | PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem. | 2020-07-01 | 10.1093/bioinformatics/btaa464 | view | ||
| Hodzic | Bioinformatics | Identification of conserved evolutionary trajectories in tumors. | 2020-07-01 | 10.1093/bioinformatics/btaa453 | view | ||
| DeMeo | Bioinformatics | Hopper: a mathematically optimal algorithm for sketching biological data. | 2020-07-01 | 10.1093/bioinformatics/btaa408 | view | ||
| Lian | Bioinformatics | Artificial-cell-type aware cell-type classification in CITE-seq. | 2020-07-01 | 10.1093/bioinformatics/btaa467 | view | ||
| Myers | Bioinformatics | Identifying tumor clones in sparse single-cell mutation data. | 2020-07-01 | 10.1093/bioinformatics/btaa449 | view | ||
| Tao | Bioinformatics | Robust and accurate deconvolution of tumor populations uncovers evolutionary mechanisms of breast cancer metastasis. | 2020-07-01 | 10.1093/bioinformatics/btaa396 | view | ||
| Srivastava | Bioinformatics | A Bayesian framework for inter-cellular information sharing improves dscRNA-seq quantification. | 2020-07-01 | 10.1093/bioinformatics/btaa450 | view | ||
| Wainer-Katsir | Bioinformatics | BIRD: identifying cell doublets via biallelic expression from single cells. | 2020-07-01 | 10.1093/bioinformatics/btaa474 | view | ||
| Todorov | Bioinformatics | TinGa: fast and flexible trajectory inference with Growing Neural Gas. | 2020-07-01 | 10.1093/bioinformatics/btaa463 | view | ||
| Eura | Front Neurosci | Brainstem Organoids From Human Pluripotent Stem Cells. | 2020-07-01 | 10.3389/fnins.2020.00538 | view | ||
| Zheng | Adv Sci (Weinh) | Trajectory and Functional Analysis of PD-1high CD4+CD8+ T Cells in Hepatocellular Carcinoma by Single-Cell Cytometry and Transcriptome Sequencing. | 2020-07-01 | 10.1002/advs.202000224 | view | ||
| Bao | J Immunother Cancer | ACE2 and TMPRSS2 expression by clinical, HLA, immune, and microbial correlates across 34 human cancers and matched normal tissues: implications for SARS-CoV-2 COVID-19. | 2020-07-01 | 10.1136/jitc-2020-001020 | view | ||
| Ge | Theranostics | Single-cell Transcriptome Profiling reveals Dermal and Epithelial cell fate decisions during Embryonic Hair Follicle Development. | 2020-07-01 | 10.7150/thno.44306 | view | ||
| Schetters | J Immunother Cancer | Monocyte-derived APCs are central to the response of PD1 checkpoint blockade and provide a therapeutic target for combination therapy. | 2020-07-01 | 10.1136/jitc-2020-000588 | view | ||
| Garrido-Martin | J Immunother Cancer | M1hot tumor-associated macrophages boost tissue-resident memory T cells infiltration and survival in human lung cancer. | 2020-07-01 | 10.1136/jitc-2020-000778 | view | ||
| Capdevila | Methods Mol. Biol. | Single-Cell Transcriptional Profiling of the Intestinal Epithelium. | 2020-07-01 | 10.1007/978-1-0716-0747-3_8 | view | ||
| Norkin | Methods Mol. Biol. | Single-Cell Studies of Intestinal Stem Cell Heterogeneity During Homeostasis and Regeneration. | 2020-07-01 | 10.1007/978-1-0716-0747-3_9 | view | ||
| He | Nature | The changing mouse embryo transcriptome at whole tissue and single-cell resolution. | 2020-07-01 | 10.1038/s41586-020-2536-x | view | ||
| Seweryn | Comput Struct Biotechnol J | Application of information theoretical approaches to assess diversity and similarity in single-cell transcriptomics. | 2020-07-01 | 10.1016/j.csbj.2020.05.005 | view | ||
| Ásgrímsdóttir | Front Cell Dev Biol | Midbrain Dopaminergic Neuron Development at the Single Cell Level: In vivo and in Stem Cells. | 2020-07-01 | 10.3389/fcell.2020.00463 | view | ||
| Tawil | Thromb. Res. | Genetic and epigenetic regulation of cancer coagulome - lessons from heterogeneity of cancer cell populations. | 2020-07-01 | 10.1016/S0049-3848(20)30405-9 | view | ||
| Sagar | Annu Rev Biomed Data Sci | Deciphering Cell Fate Decision by Integrated Single-Cell Sequencing Analysis. | 2020-07-01 | 10.1146/annurev-biodatasci-111419-091750 | view | ||
| Habermann | Sci Adv | Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis. | 2020-07-01 | 10.1126/sciadv.aba1972 | view | ||
| Adams | Sci Adv | Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis. | 2020-07-01 | 10.1126/sciadv.aba1983 | view | ||
| Menden | Sci Adv | Deep learning-based cell composition analysis from tissue expression profiles. | 2020-07-01 | 10.1126/sciadv.aba2619 | 2 | view | |
| Rath | Sci Adv | Single-cell transcriptomics identifies multiple pathways underlying antitumor function of TCR- and CD8αβ-engineered human CD4+ T cells. | 2020-07-01 | 10.1126/sciadv.aaz7809 | view | ||
| Bowman | Proteomics | Advanced Cell Mapping Visualizations for Single Cell Functional Proteomics Enabling Patient Stratification. | 2020-07-01 | 10.1002/pmic.201900270 | view | ||
| Liegeois | Elife | An atlas for hemocytes in an insect. | 2020-06-30 | 10.7554/eLife.59113 | view | ||
| Schupp | Am. J. Respir. Crit. Care Med. | Single Cell Transcriptional Archetypes of Airway Inflammation in Cystic Fibrosis. | 2020-06-30 | 10.1164/rccm.202004-0991OC | view | ||
| Alexander | Eur Respir Rev | Breathing fresh air into respiratory research with single-cell RNA sequencing. | 2020-06-30 | 10.1183/16000617.0060-2020 | view | ||
| Gandhi | Int J Mol Sci | Contribution of Immune Cells to Glucocorticoid Receptor Expression in Breast Cancer. | 2020-06-30 | 10.3390/ijms21134635 | view | ||
| Vitrinel | ACS Omega | Simple Method to Quantify Protein Abundances from 1000 Cells. | 2020-06-30 | 10.1021/acsomega.0c01191 | view | ||
| Zhang | Crit. Rev. Oncol. Hematol. | Revealing the molecular mechanism of central nervous system leukemia with single-cell technology. | 2020-06-30 | 10.1016/j.critrevonc.2020.103046 | view | ||
| Buen Abad Najar | Elife | Coverage-dependent bias creates the appearance of binary splicing in single cells. | 2020-06-29 | 10.7554/eLife.54603 | view | ||
| Calls | Neuro-oncology | Cisplatin-induced peripheral neuropathy is associated to neuronal senescence-like response. | 2020-06-29 | 10.1093/neuonc/noaa151 | view | ||
| Onsbring | BMC Genomics | An efficient single-cell transcriptomics workflow for microbial eukaryotes benchmarked on Giardia intestinalis cells. | 2020-06-29 | 10.1186/s12864-020-06858-7 | view | ||
| Yousif | BMC Bioinformatics | NASQAR: a web-based platform for high-throughput sequencing data analysis and visualization. | 2020-06-29 | 10.1186/s12859-020-03577-4 | view | ||
| Kaspi | BMC Genomics | mitch: multi-contrast pathway enrichment for multi-omics and single-cell profiling data. | 2020-06-29 | 10.1186/s12864-020-06856-9 | view | ||
| Gupta | Proc. Natl. Acad. Sci. U.S.A. | Sex differences in neutrophil biology modulate response to type I interferons and immunometabolism. | 2020-06-29 | 10.1073/pnas.2003603117 | view | ||
| Alivernini | Nat. Med. | Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis. | 2020-06-29 | 10.1038/s41591-020-0939-8 | view | ||
| Laidlaw | Nat. Immunol. | The transcription factor Hhex cooperates with the corepressor Tle3 to promote memory B cell development. | 2020-06-29 | 10.1038/s41590-020-0713-6 | view | ||
| Alda-Catalinas | Cell Syst | A Single-Cell Transcriptomics CRISPR-Activation Screen Identifies Epigenetic Regulators of the Zygotic Genome Activation Program. | 2020-06-29 | 10.1016/j.cels.2020.06.004 | view | ||
| Shen | J. Cell. Mol. Med. | The ACE2 expression in Sertoli cells and germ cells may cause male reproductive disorder after SARS-CoV-2 infection. | 2020-06-28 | 10.1111/jcmm.15541 | view | ||
| Bigaeva | Hum. Mol. Genet. | Understanding human gut diseases at single-cell resolution. | 2020-06-26 | 10.1093/hmg/ddaa130 | view | ||
| Xu | Nucleic Acids Res. | scIGANs: single-cell RNA-seq imputation using generative adversarial networks. | 2020-06-26 | 10.1093/nar/gkaa506 | view | ||
| Cheng | Cardiovasc. Res. | Single-cell RNA sequencing reveals cell type- and artery-specific vascular remodeling in male spontaneously hypertensive rats. | 2020-06-26 | 10.1093/cvr/cvaa164 | view | ||
| Chua | Nat. Biotechnol. | COVID-19 severity correlates with airway epithelium-immune cell interactions identified by single-cell analysis. | 2020-06-26 | 10.1038/s41587-020-0602-4 | view | ||
| Yang | Brief. Bioinformatics | SMNN: batch effect correction for single-cell RNA-seq data via supervised mutual nearest neighbor detection. | 2020-06-26 | 10.1093/bib/bbaa097 | view | ||
| Zhang | Cancer Immunol. Immunother. | Dynamics of peripheral T cell clones during PD-1 blockade in non-small cell lung cancer. | 2020-06-26 | 10.1007/s00262-020-02642-4 | view | ||
| Oguri | Cell | CD81 Controls Beige Fat Progenitor Cell Growth and Energy Balance via FAK Signaling. | 2020-06-26 | 10.1016/j.cell.2020.06.021 | view | ||
| Zheng | World J Stem Cells | Recent advances of single-cell RNA sequencing technology in mesenchymal stem cell research. | 2020-06-26 | 10.4252/wjsc.v12.i6.438 | view | ||
| Cowman | Clin. Cancer Res. | Macrophage HIF-1α is an independent prognostic indicator in kidney cancer. | 2020-06-25 | 10.1158/1078-0432.CCR-19-3890 | view | ||
| Velazquez-Villarreal | Commun Biol | Single-cell sequencing of genomic DNA resolves sub-clonal heterogeneity in a melanoma cell line. | 2020-06-25 | 10.1038/s42003-020-1044-8 | view | ||
| Hertzano | Laryngoscope | Cell Type-Specific Expression Analysis of the Inner Ear: A Technical Report. | 2020-06-24 | 10.1002/lary.28765 | 1 | view | |
| Chen | Genome Biol. | Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer. | 2020-06-24 | 10.1186/s13059-020-02064-6 | 1 | view | |
| Trzupek | Genome Med | Discovery of CD80 and CD86 as recent activation markers on regulatory T cells by protein-RNA single-cell analysis. | 2020-06-24 | 10.1186/s13073-020-00756-z | 1 | view | |
| Bian | Development | A single cell transcriptional atlas of early synovial joint development. | 2020-06-24 | 10.1242/dev.185777 | view | ||
| Sekine | Sci Rep | Robust detection of undifferentiated iPSC among differentiated cells. | 2020-06-24 | 10.1038/s41598-020-66845-6 | view | ||
| Liu | Mol Plant | Global Dynamic Molecular Profiles of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing. | 2020-06-24 | 10.1016/j.molp.2020.06.010 | 1 | view | |
| Shin | Cell. Immunol. | IL-7 receptor alpha defines heterogeneity and signature of human effector memory CD8+ T cells in high dimensional analysis. | 2020-06-24 | 10.1016/j.cellimm.2020.104155 | view | ||
| Wu | Blood Adv | Sequencing of RNA in single cells reveals a distinct transcriptome signature of hematopoiesis in GATA2 deficiency. | 2020-06-23 | 10.1182/bloodadvances.2019001352 | view | ||
| Sun | Mol Omics | LRSK: a low-rank self-representation K-means method for clustering single-cell RNA-sequencing data. | 2020-06-23 | 10.1039/d0mo00034e | view | ||
| Patra | Biol Open | Site-1 protease ablation in the osterix-lineage in mice results in bone marrow neutrophilia and hematopoietic stem cell alterations. | 2020-06-23 | 10.1242/bio.052993 | view | ||
| Cheng | Cell Rep | NeuroD1 Dictates Tumor Cell Differentiation in Medulloblastoma. | 2020-06-23 | 10.1016/j.celrep.2020.107782 | view | ||
| Mizrak | Cell Rep | Single-Cell Profiling and SCOPE-Seq Reveal Lineage Dynamics of Adult Ventricular-Subventricular Zone Neurogenesis and NOTUM as a Key Regulator. | 2020-06-23 | 10.1016/j.celrep.2020.107805 | view | ||
| Chen | J. Infect. | Molecular identification of Cryptococcus gattii from cerebrospinal fluid using single-cell sequencing: a case study. | 2020-06-23 | 10.1016/j.jinf.2020.06.040 | view | ||
| Okaty | Elife | A single-cell transcriptomic and anatomic atlas of mouse dorsal raphe Pet1 neurons. | 2020-06-22 | 10.7554/eLife.55523 | view | ||
| Wen | J. Bone Miner. Res. | Runx2 regulates mouse tooth root development via activation of WNT inhibitor Notum. | 2020-06-22 | 10.1002/jbmr.4120 | view | ||
| Spakowicz | Genome Biol. | Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients. | 2020-06-22 | 10.1186/s13059-020-02033-z | view | ||
| Griffiths | Proc. Natl. Acad. Sci. U.S.A. | Circulating immune cell phenotype dynamics reflect the strength of tumor-immune cell interactions in patients during immunotherapy. | 2020-06-22 | 10.1073/pnas.1918937117 | 1 | view | |
| Liu | Nat Commun | An entropy-based metric for assessing the purity of single cell populations. | 2020-06-22 | 10.1038/s41467-020-16904-3 | view | ||
| Izar | Nat. Med. | A single-cell landscape of high-grade serous ovarian cancer. | 2020-06-22 | 10.1038/s41591-020-0926-0 | view | ||
| Goad | bioRxiv | Female reproductive tract has low concentration of SARS-CoV2 receptors. | 2020-06-22 | 10.1101/2020.06.20.163097 | view | ||
| Schüler | Mech. Ageing Dev. | Stem Cell Aging: The Upcoming Era of Proteins and Metabolites. | 2020-06-20 | 10.1016/j.mad.2020.111288 | view | ||
| Biasini | iScience | The Contribution of lincRNAs at the Interface between Cell Cycle Regulation and Cell State Maintenance. | 2020-06-20 | 10.1016/j.isci.2020.101291 | view | ||
| Bain | Sci Immunol | Rate of replenishment and microenvironment contribute to the sexually dimorphic phenotype and function of peritoneal macrophages. | 2020-06-19 | 10.1126/sciimmunol.abc4466 | view | ||
| Qian | Cell Res. | A pan-cancer blueprint of the heterogeneous tumor microenvironment revealed by single-cell profiling. | 2020-06-19 | 10.1038/s41422-020-0355-0 | view | ||
| Van de Sande | Nat Protoc | A scalable SCENIC workflow for single-cell gene regulatory network analysis. | 2020-06-19 | 10.1038/s41596-020-0336-2 | view | ||
| Ji | Cell | Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma. | 2020-06-19 | 10.1016/j.cell.2020.05.039 | 7 | view | |
| Bernstein | Cell Syst | Solo: Doublet Identification in Single-Cell RNA-Seq via Semi-Supervised Deep Learning. | 2020-06-19 | 10.1016/j.cels.2020.05.010 | view | ||
| Cosacak | STAR Protoc | Protocol for Dissection and Dissociation of Zebrafish Telencephalon for Single-Cell Sequencing. | 2020-06-19 | 10.1016/j.xpro.2020.100042 | view | ||
| Takeda | STAR Protoc | Single-Cell Transcriptomics of Human Lymph Node Stroma. | 2020-06-19 | 10.1016/j.xpro.2020.100021 | view | ||
| Häring | STAR Protoc | Protocol to Prepare Single-Cell Suspensions from Mouse Vagal Sensory Ganglia for Transcriptomic Studies. | 2020-06-19 | 10.1016/j.xpro.2020.100030 | view | ||
| Hao | Am. J. Respir. Crit. Care Med. | GWAS Functional Variant rs2076295 Regulates Desmoplakin (DSP) Expression in Airway Epithelial Cells. | 2020-06-18 | 10.1164/rccm.201910-1958OC | view | ||
| Gray | J. Biol. Chem. | Discordance between GLP-1R gene and protein expression in mouse pancreatic islet cells. | 2020-06-18 | 10.1074/jbc.RA120.014368 | view | ||
| Pang | Genome Res. | Coexpression enrichment analysis at the single-cell level reveals convergent defects in neural progenitor cells and their cell-type transitions in neurodevelopmental disorders. | 2020-06-18 | 10.1101/gr.254987.119 | view | ||
| Jiang | JCI Insight | Single cell rna sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome. | 2020-06-18 | 10.1172/jci.insight.135678 | view | ||
| Deng | Curr Atheroscler Rep | New Classification of Macrophages in Plaques: a Revolution. | 2020-06-18 | 10.1007/s11883-020-00850-y | view | ||
| Kempski | Gastroenterology | IL22BP Mediates the Anti-Tumor Effects of Lymphotoxin Against Colorectal Tumors in Mice and Humans. | 2020-06-18 | 10.1053/j.gastro.2020.06.033 | view | ||
| Hong | J. Immunol. | IL-23 Promotes a Coordinated B Cell Germinal Center Program for Class-Switch Recombination to IgG2b in BXD2 Mice. | 2020-06-17 | 10.4049/jimmunol.2000280 | view | ||
| Yan | Sci Rep | Cell Atlas of The Human Fovea and Peripheral Retina. | 2020-06-17 | 10.1038/s41598-020-66092-9 | view | ||
| Bica | Sci Rep | Unsupervised generative and graph representation learning for modelling cell differentiation. | 2020-06-17 | 10.1038/s41598-020-66166-8 | 1 | view | |
| Hu | Nature | Lineage dynamics of the endosymbiotic cell type in the soft coral Xenia. | 2020-06-17 | 10.1038/s41586-020-2385-7 | view | ||
| Rodgers | Exp. Cell Res. | Identification of immune and non-immune cells in regenerating axolotl limbs by single-cell sequencing. | 2020-06-17 | 10.1016/j.yexcr.2020.112149 | view | ||
| Aubin-Frankowski | Bioinformatics | Gene regulation inference from single-cell RNA-seq data with linear differential equations and velocity inference. | 2020-06-17 | 10.1093/bioinformatics/btaa576 | view | ||
| Jin | Emerg Microbes Infect | Virus strain from a mild COVID-19 patient in Hangzhou represents a new trend in SARS-CoV-2 evolution potentially related to Furin cleavage site. | 2020-06-16 | 10.1080/22221751.2020.1781551 | 1 | view | |
| Zafar | Nat Commun | Single-cell lineage tracing by integrating CRISPR-Cas9 mutations with transcriptomic data. | 2020-06-16 | 10.1038/s41467-020-16821-5 | view | ||
| Li | Cell Rep | Disseminated Melanoma Cells Transdifferentiate into Endothelial Cells in Intravascular Niches at Metastatic Sites. | 2020-06-16 | 10.1016/j.celrep.2020.107765 | view | ||
| Le | Immunity | Single-Cell RNA-Seq Mapping of Human Thymopoiesis Reveals Lineage Specification Trajectories and a Commitment Spectrum in T Cell Development. | 2020-06-16 | 10.1016/j.immuni.2020.05.010 | 2 | view | |
| Al Tanoury | Development | Differentiation of the human PAX7-positive myogenic precursors/satellite cell lineage in vitro. | 2020-06-15 | 10.1242/dev.187344 | view | ||
| Ren | Cell Res. | Reconstruction of cell spatial organization from single-cell RNA sequencing data based on ligand-receptor mediated self-assembly. | 2020-06-15 | 10.1038/s41422-020-0353-2 | view | ||
| Roider | Nat. Cell Biol. | Dissecting intratumour heterogeneity of nodal B-cell lymphomas at the transcriptional, genetic and drug-response levels. | 2020-06-15 | 10.1038/s41556-020-0532-x | view | ||
| Lorenzo | Nucleic Acids Res. | Combining single-cell RNA-sequencing with a molecular atlas unveils new markers for Caenorhabditis elegans neuron classes. | 2020-06-15 | 10.1093/nar/gkaa486 | view | ||
| Hwang | Bone | Activin A does not drive post-traumatic heterotopic ossification. | 2020-06-15 | 10.1016/j.bone.2020.115473 | view | ||
| Summers | FASEB J. | Resident mesenchymal vascular progenitors modulate adaptive angiogenesis and pulmonary remodeling via regulation of canonical Wnt signaling. | 2020-06-13 | 10.1096/fj.202000629R | view | ||
| Yi | Oncogene | Integrative multi-omics analysis of a colon cancer cell line with heterogeneous Wnt activity revealed RUNX2 as an epigenetic regulator of EMT. | 2020-06-13 | 10.1038/s41388-020-1351-z | view | ||
| Delley | Lab Chip | Microfluidic particle zipper enables controlled loading of droplets with distinct particle types. | 2020-06-12 | 10.1039/d0lc00339e | view | ||
| Aguirre-Gamboa | BMC Bioinformatics | Deconvolution of bulk blood eQTL effects into immune cell subpopulations. | 2020-06-12 | 10.1186/s12859-020-03576-5 | view | ||
| Srinivasan | RNA | A Hybrid Deep Clustering Approach for Robust Cell Type Profiling Using Single-cell RNA-seq Data. | 2020-06-12 | 10.1261/rna.074427.119 | 2 | view | |
| Li | Cancer Immunol Res | The Mincle/Syk/NF-κB Signalling Circuit is Essential for Maintaining the Protumoral Activities of Tumor-associated Macrophages. | 2020-06-12 | 10.1158/2326-6066.CIR-19-0782 | view | ||
| Zhang | Gut | Dissecting transcriptional heterogeneity in primary gastric adenocarcinoma by single cell RNA sequencing. | 2020-06-12 | 10.1136/gutjnl-2019-320368 | view | ||
| Pollard | Biochem. J. | Thermogenic adipocytes: lineage, function and therapeutic potential. | 2020-06-12 | 10.1042/BCJ20200298 | view | ||
| Kim | J. Dermatol. Sci. | Application of single-cell RNA sequencing on human skin: Technical evolution and challenges. | 2020-06-12 | 10.1016/j.jdermsci.2020.06.002 | view | ||
| Aparicio | Patterns (N Y) | A Random Matrix Theory Approach to Denoise Single-Cell Data. | 2020-06-12 | 10.1016/j.patter.2020.100035 | view | ||
| Qi | BMC Bioinformatics | A flexible network-based imputing-and-fusing approach towards the identification of cell types from single-cell RNA-seq data. | 2020-06-11 | 10.1186/s12859-020-03547-w | view | ||
| Pellegrini | Science | Human CNS barrier-forming organoids with cerebrospinal fluid production. | 2020-06-11 | 10.1126/science.aaz5626 | view | ||
| Takayama | Sci Rep | Selective Induction of Human Autonomic Neurons Enables Precise Control of Cardiomyocyte Beating. | 2020-06-11 | 10.1038/s41598-020-66303-3 | view | ||
| Lee | Genes (Basel) | Relative Abundance of SARS-CoV-2 Entry Genes in the Enterocytes of the Lower Gastrointestinal Tract. | 2020-06-11 | 10.3390/genes11060645 | view | ||
| Saviano | J. Hepatol. | Single-cell genomics and spatial transcriptomics: discovery of novel cell states and cellular interactions in liver physiology and disease biology. | 2020-06-10 | 10.1016/j.jhep.2020.06.004 | view | ||
| Kuwahara | Elife | Delineating the early transcriptional specification of the mammalian trachea and esophagus. | 2020-06-09 | 10.7554/eLife.55526 | view | ||
| Hagey | Nat Commun | CYCLIN-B1/2 and -D1 act in opposition to coordinate cortical progenitor self-renewal and lineage commitment. | 2020-06-09 | 10.1038/s41467-020-16597-8 | view | ||
| Jackson-Weaver | Cell Rep | PRMT1-p53 Pathway Controls Epicardial EMT and Invasion. | 2020-06-09 | 10.1016/j.celrep.2020.107739 | view | ||
| Voigt | Microvasc. Res. | Bulk and single-cell gene expression analyses reveal aging human choriocapillaris has pro-inflammatory phenotype. | 2020-06-09 | 10.1016/j.mvr.2020.104031 | view | ||
| Barwinska | J Vis Exp | Application of Laser Microdissection to Uncover Regional Transcriptomics in Human Kidney Tissue. | 2020-06-09 | 10.3791/61371 | view | ||
| Jung | Int. J. Cancer | Neuronal signatures in cancer. | 2020-06-08 | 10.1002/ijc.33138 | view | ||
| Guo | J. Cell. Physiol. | Single-cell RNA analysis on ACE2 expression provides insights into SARS-CoV-2 potential entry into the bloodstream and heart injury. | 2020-06-08 | 10.1002/jcp.29802 | view | ||
| Song | Genome Biol. | Direct-seq: programmed gRNA scaffold for streamlined scRNA-seq in CRISPR screen. | 2020-06-08 | 10.1186/s13059-020-02044-w | view | ||
| Ni | Genome Biol. | CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data. | 2020-06-08 | 10.1186/s13059-020-02054-8 | view | ||
| Tan | Proc. Natl. Acad. Sci. U.S.A. | Hepatocyte-specific TAK1 deficiency drives RIPK1 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma. | 2020-06-08 | 10.1073/pnas.2005353117 | view | ||
| Schnepp | Mol. Cancer Res. | Single Cell Transcriptomics Analysis Identifies Nuclear Protein 1 as a Regulator of Docetaxel Resistance in Prostate Cancer Cells. | 2020-06-08 | 10.1158/1541-7786.MCR-20-0051 | view | ||
| Wilk | Nat. Med. | A single-cell atlas of the peripheral immune response in patients with severe COVID-19. | 2020-06-08 | 10.1038/s41591-020-0944-y | view | ||
| Hsu | Toxicol. Sci. | Single cell RNA-seq analysis reveals that prenatal arsenic exposure results in long-term, adverse effects on immune gene expression in response to Influenza A infection. | 2020-06-08 | 10.1093/toxsci/kfaa080 | view | ||
| Zhao | Methods Mol. Biol. | Interactions of Hematopoietic Stem Cells with Bone Marrow Niche. | 2020-06-06 | 10.1007/7651_2020_298 | view | ||
| Hu | PLoS Comput. Biol. | Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers. | 2020-06-05 | 10.1371/journal.pcbi.1007925 | view | ||
| Hjorton | Arthritis Res. Ther. | The regulation and pharmacological modulation of immune complex induced type III IFN production by plasmacytoid dendritic cells. | 2020-06-05 | 10.1186/s13075-020-02186-z | view | ||
| LaMarche | Cell Metab. | Distinct iNKT Cell Populations Use IFNγ or ER Stress-Induced IL-10 to Control Adipose Tissue Homeostasis. | 2020-06-05 | 10.1016/j.cmet.2020.05.017 | 2 | view | |
| Joseph | Prostate | Urethral luminal epithelia are castration-insensitive cells of the proximal prostate. | 2020-06-04 | 10.1002/pros.24020 | view | ||
| Dimitrov-Markov | Mol. Cancer Ther. | Discovery of new targets to control metastasis in pancreatic cancer by single cell transcriptomics analysis of circulating tumor cells. | 2020-06-04 | 10.1158/1535-7163.MCT-19-1166 | view | ||
| Zhang | J. Hepatol. | Single cell transcriptomic architecture and intercellular crosstalk of human intrahepatic cholangiocarcinoma. | 2020-06-04 | 10.1016/j.jhep.2020.05.039 | view | ||
| Teves | Mol. Cells | Mapping Cellular Coordinates through Advances in Spatial Transcriptomics Technology. | 2020-06-04 | 10.14348/molcells.2020.0020 | view | ||
| Sanborn | Sci Rep | Analysis of cell-associated DENV RNA by oligo(dT) primed 5' capture scRNAseq. | 2020-06-03 | 10.1038/s41598-020-65939-5 | view | ||
| Lee | Nature | Hair-bearing human skin generated entirely from pluripotent stem cells. | 2020-06-03 | 10.1038/s41586-020-2352-3 | view | ||
| Ye | Biochem. Biophys. Res. Commun. | Single-cell transcriptional profiling identifies a cluster of potential metastasis-associated UBE2C+ cells in immature ovarian teratoma. | 2020-06-03 | 10.1016/j.bbrc.2020.05.144 | view | ||
| Engel | JCI Insight | Single-cell transcriptomics of allo-reactive CD4+ T cells over time reveals divergent fates during gut GVHD. | 2020-06-02 | 10.1172/jci.insight.137990 | view | ||
| Hsu | JCI Insight | Endogenous CCN family member WISP-1 inhibits trauma-induced heterotopic ossification. | 2020-06-02 | 10.1172/jci.insight.135432 | view | ||
| Denisenko | Genome Biol. | Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows. | 2020-06-02 | 10.1186/s13059-020-02048-6 | view | ||
| Chen | J. Biol. Chem. | Early cleavage of preimplantation embryos is regulated by tRNAGln-TTG-derived small RNAs present in mature spermatozoa. | 2020-06-02 | 10.1074/jbc.RA120.013003 | view | ||
| Xiong | CNS Neurosci Ther | Effect of intra- and inter-tumoral heterogeneity on molecular characteristics of primary IDH-wild type glioblastoma revealed by single-cell analysis. | 2020-06-02 | 10.1111/cns.13396 | view | ||
| Wesely | Cell Rep | Acute Myeloid Leukemia iPSCs Reveal a Role for RUNX1 in the Maintenance of Human Leukemia Stem Cells. | 2020-06-02 | 10.1016/j.celrep.2020.107688 | view | ||
| Wu | Antiviral Res. | A novel recombinant cccDNA-based mouse model with long term maintenance of rcccDNA and antigenemia. | 2020-06-02 | 10.1016/j.antiviral.2020.104826 | view | ||
| Collin | Ocul Surf | Co-expression of SARS-CoV-2 entry genes in the superficial adult human conjunctival, limbal and corneal epithelium suggests an additional route of entry via the ocular surface. | 2020-06-02 | 10.1016/j.jtos.2020.05.013 | view | ||
| Shami | Dev. Cell | Single-Cell RNA Sequencing of Human, Macaque, and Mouse Testes Uncovers Conserved and Divergent Features of Mammalian Spermatogenesis. | 2020-06-02 | 10.1016/j.devcel.2020.05.010 | view | ||
| Seow | J Indian Inst Sci | Single-Cell RNA Sequencing for Precision Oncology: Current State-of-Art. | 2020-06-02 | 10.1007/s41745-020-00178-1 | view | ||
| Andor | NAR Genom Bioinform | Joint single cell DNA-seq and RNA-seq of gastric cancer cell lines reveals rules of in vitro evolution. | 2020-06-01 | 10.1093/nargab/lqaa016 | view | ||
| Zakharov | J. Exp. Med. | Single-cell RNA sequencing of murine islets shows high cellular complexity at all stages of autoimmune diabetes. | 2020-06-01 | 10.1084/jem.20192362 | view | ||
| Londono | J Immunol Regen Med | Single Cell Sequencing Analysis of Lizard Phagocytic Cell Populations and Their Role in Tail Regeneration. | 2020-06-01 | 10.1016/j.regen.2020.100029 | view | ||
| Rollins | Curr Protoc Immunol | T Cell Receptor Engineered Lymphocytes for Cancer Therapy. | 2020-06-01 | 10.1002/cpim.97 | view | ||
| Cano-Gamez | Front Genet | From GWAS to Function: Using Functional Genomics to Identify the Mechanisms Underlying Complex Diseases. | 2020-06-01 | 10.3389/fgene.2020.00424 | view | ||
| Cao | Front Genet | SCSA: A Cell Type Annotation Tool for Single-Cell RNA-seq Data. | 2020-06-01 | 10.3389/fgene.2020.00490 | view | ||
| Wang | Elife | Tissue resident macrophages promote extracellular matrix homeostasis in the mammary gland stroma of nulliparous mice. | 2020-06-01 | 10.7554/eLife.57438 | view | ||
| Mohanraj | Nucleic Acids Res. | CReSCENT: CanceR Single Cell ExpressioN Toolkit. | 2020-06-01 | 10.1093/nar/gkaa437 | view | ||
| Farouni | Nat Commun | Model-based analysis of sample index hopping reveals its widespread artifacts in multiplexed single-cell RNA-sequencing. | 2020-06-01 | 10.1038/s41467-020-16522-z | view | ||
| Schraivogel | Nat. Methods | Targeted Perturb-seq enables genome-scale genetic screens in single cells. | 2020-06-01 | 10.1038/s41592-020-0837-5 | view | ||
| Zhao | Front Genet | MFCNV: A New Method to Detect Copy Number Variations From Next-Generation Sequencing Data. | 2020-06-01 | 10.3389/fgene.2020.00434 | view | ||
| Hellings | J. Allergy Clin. Immunol. | Epithelial barriers in allergy and asthma. | 2020-06-01 | 10.1016/j.jaci.2020.04.010 | view | ||
| Hagemann-Jensen | Nat. Biotechnol. | Single-cell RNA counting at allele and isoform resolution using Smart-seq3. | 2020-06-01 | 10.1038/s41587-020-0497-0 | view | ||
| Mereu | Nat. Biotechnol. | Benchmarking single-cell RNA-sequencing protocols for cell atlas projects. | 2020-06-01 | 10.1038/s41587-020-0469-4 | view | ||
| Wang | Front Bioeng Biotechnol | Analysis of Gene Signatures of Tumor Microenvironment Yields Insight Into Mechanisms of Resistance to Immunotherapy. | 2020-06-01 | 10.3389/fbioe.2020.00348 | view | ||
| Zhou | Front Cell Dev Biol | Single-Cell RNA-Seq Analysis Uncovers Distinct Functional Human NKT Cell Sub-Populations in Peripheral Blood. | 2020-06-01 | 10.3389/fcell.2020.00384 | view | ||
| Alonso | F1000Res | Prediction of cell position using single-cell transcriptomic data: an iterative procedure. | 2020-06-01 | 10.12688/f1000research.20715.1 | view | ||
| Banerjee | Front Cell Neurosci | Increased Connexin36 Phosphorylation in AII Amacrine Cell Coupling of the Mouse Myopic Retina. | 2020-06-01 | 10.3389/fncel.2020.00124 | view | ||
| Chen | Int. J. Biol. Sci. | Ligand-receptor interaction atlas within and between tumor cells and T cells in lung adenocarcinoma. | 2020-06-01 | 10.7150/ijbs.42080 | view | ||
| Lin | Heliyon | Establishment and transcriptomic analyses of a cattle rumen epithelial primary cells (REPC) culture by bulk and single-cell RNA sequencing to elucidate interactions of butyrate and rumen development. | 2020-06-01 | 10.1016/j.heliyon.2020.e04112 | view | ||
| Lin | Mol. Syst. Biol. | scClassify: sample size estimation and multiscale classification of cells using single and multiple reference. | 2020-06-01 | 10.15252/msb.20199389 | 1 | view | |
| Choueiry | J Immunother Cancer | CD200 promotes immunosuppression in the pancreatic tumor microenvironment. | 2020-06-01 | 10.1136/jitc-2019-000189 | view | ||
| Lei | Front Cell Dev Biol | Cathepsin S and Protease-Activated Receptor-2 Drive Alloimmunity and Immune Regulation in Kidney Allograft Rejection. | 2020-06-01 | 10.3389/fcell.2020.00398 | view | ||
| Kanton | Methods Cell Biol. | Single-cell genomic analysis of human cerebral organoids. | 2020-06-01 | 10.1016/bs.mcb.2020.03.013 | view | ||
| Wen | Cell Discov | Erratum: Author Correction: Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing. | 2020-06-01 | 10.1038/s41421-020-00187-5 | view | ||
| Ochiai | Sci Adv | Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells. | 2020-06-01 | 10.1126/sciadv.aaz6699 | view | ||
| Pyle | Laryngoscope Investig Otolaryngol | Applications of single-cell sequencing for the field of otolaryngology: A contemporary review. | 2020-06-01 | 10.1002/lio2.388 | view | ||
| Kosaric | Mol. Ther. | Macrophage Subpopulation Dynamics Shift following Intravenous Infusion of Mesenchymal Stromal Cells. | 2020-05-30 | 10.1016/j.ymthe.2020.05.022 | view | ||
| Messerschmidt | Int. J. Cancer | Distinct immune evasion in APOBEC-enriched, HPV-negative HNSCC. | 2020-05-29 | 10.1002/ijc.33123 | view | ||
| Foltz | Nat Commun | Evolution and structure of clinically relevant gene fusions in multiple myeloma. | 2020-05-29 | 10.1038/s41467-020-16434-y | view | ||
| Gutmann | Antioxid. Redox Signal. | The Landscape of Coding and Non-coding RNAs in Platelets. | 2020-05-28 | 10.1089/ars.2020.8139 | view | ||
| Venkatakrishnan | Elife | Knowledge synthesis of 100 million biomedical documents augments the deep expression profiling of coronavirus receptors. | 2020-05-28 | 10.7554/eLife.58040 | view | ||
| Xu | Development | Unifying Developmental Programs for Embryonic and Post-Embryonic Neurogenesis in the Zebrafish Retina. | 2020-05-28 | 10.1242/dev.185660 | view | ||
| Zhang | Cell Biol. Toxicol. | Single-cell transcriptomics uncovers potential marker genes of ochratoxin A-sensitive renal cells in an acute toxicity rat model. | 2020-05-28 | 10.1007/s10565-020-09531-7 | view | ||
| An | Int J Mol Sci | CSI NGS Portal: An Online Platform for Automated NGS Data Analysis and Sharing. | 2020-05-28 | 10.3390/ijms21113828 | view | ||
| Heijink | Allergy | Epithelial cell dysfunction, a major driver of asthma development. | 2020-05-27 | 10.1111/all.14421 | view | ||
| Bridges | Am. J. Physiol. Lung Cell Mol. Physiol. | Glucocorticoid Regulates Mesenchymal Cell Differentiation Required for Perinatal Lung Morphogenesis and Function. | 2020-05-27 | 10.1152/ajplung.00459.2019 | view | ||
| Lee | Genome Med | Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient. | 2020-05-27 | 10.1186/s13073-020-00741-6 | view | ||
| Cain | Dis Model Mech | Quantitative single-cell interactomes in normal and virus-infected mouse lungs. | 2020-05-27 | 10.1242/dmm.044404 | 1 | view | |
| Shao | Nat Commun | Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration. | 2020-05-27 | 10.1038/s41467-020-16454-8 | view | ||
| De Smet | J. Hepatol. | Single cell RNA sequencing analysis did not predict hepatocyte infection by SARS-CoV-2. | 2020-05-27 | 10.1016/j.jhep.2020.05.030 | view | ||
| Anand | Elife | SARS-CoV-2 strategically mimics proteolytic activation of human ENaC. | 2020-05-26 | 10.7554/eLife.58603 | view | ||
| Zhou | Circulation | Single-Cell Transcriptomics: New Insights in Heart Research. | 2020-05-26 | 10.1161/CIRCULATIONAHA.120.046043 | view | ||
| Borcherding | JCI Insight | A transcriptomic map of murine and human alopecia areata. | 2020-05-26 | 10.1172/jci.insight.137424 | view | ||
| Liu | Sci Signal | Myeloma cells shift osteoblastogenesis to adipogenesis by inhibiting the ubiquitin ligase MURF1 in mesenchymal stem cells. | 2020-05-26 | 10.1126/scisignal.aay8203 | view | ||
| Chen | Proc. Natl. Acad. Sci. U.S.A. | Forward genetic analysis using OCT screening identifies Sfxn3 mutations leading to progressive outer retinal degeneration in mice. | 2020-05-26 | 10.1073/pnas.1921224117 | view | ||
| Huang | Proc. Natl. Acad. Sci. U.S.A. | Putative regulators for the continuum of erythroid differentiation revealed by single-cell transcriptome of human BM and UCB cells. | 2020-05-26 | 10.1073/pnas.1915085117 | view | ||
| Karagiannis | Nat Commun | Single cell transcriptomics reveals opioid usage evokes widespread suppression of antiviral gene program. | 2020-05-26 | 10.1038/s41467-020-16159-y | view | ||
| Song | Cell Res. | The Msi1-mTOR pathway drives the pathogenesis of mammary and extramammary Paget's disease. | 2020-05-26 | 10.1038/s41422-020-0334-5 | view | ||
| Winge | Am J Med Genet C Semin Med Genet | Integration and reanalysis of transcriptomics and methylomics data derived from blood and testis tissue of men with 47,XXY Klinefelter syndrome indicates the primary involvement of Sertoli cells in the testicular pathogenesis. | 2020-05-25 | 10.1002/ajmg.c.31793 | view | ||
| David | Nucleic Acids Res. | ASAP 2020 update: an open, scalable and interactive web-based portal for (single-cell) omics analyses. | 2020-05-25 | 10.1093/nar/gkaa412 | view | ||
| Mangale | Glia | Microglia influence host defense, disease, and repair following murine coronavirus infection of the central nervous system. | 2020-05-25 | 10.1002/glia.23844 | view | ||
| Wu | Genome Biol. | Accounting for cell type hierarchy in evaluating single cell RNA-seq clustering. | 2020-05-25 | 10.1186/s13059-020-02027-x | view | ||
| Blattman | Nat Microbiol | Prokaryotic single-cell RNA sequencing by in situ combinatorial indexing. | 2020-05-25 | 10.1038/s41564-020-0729-6 | view | ||
| Rifes | Nat. Biotechnol. | Modeling neural tube development by differentiation of human embryonic stem cells in a microfluidic WNT gradient. | 2020-05-25 | 10.1038/s41587-020-0525-0 | view | ||
| Yan | J. Neurosci. | MOUSE RETINAL CELL ATLAS: MOLECULAR IDENTIFICATION OF OVER SIXTY AMACRINE CELL TYPES. | 2020-05-25 | 10.1523/JNEUROSCI.0471-20.2020 | 3 | view | |
| Rai | IEEE/ACM Trans Comput Biol Bioinform | SelfE: Gene Selection via Self-Expression for Single-Cell Data. | 2020-05-25 | 10.1109/TCBB.2020.2997326 | view | ||
| Gerard | BMC Bioinformatics | Data-based RNA-seq simulations by binomial thinning. | 2020-05-24 | 10.1186/s12859-020-3450-9 | view | ||
| Pfister | Curr. Biol. | Odorant Receptor Inhibition Is Fundamental to Odor Encoding. | 2020-05-23 | 10.1016/j.cub.2020.04.086 | view | ||
| Schuler | bioRxiv | Age-related expression of SARS-CoV-2 priming protease TMPRSS2 in the developing lung. | 2020-05-23 | 10.1101/2020.05.22.111187 | view | ||
| Arivazhagan | Circ. Res. | An Eclectic Cast of Cellular Actors Orchestrates Innate Immune Responses in the Mechanisms Driving Obesity and Metabolic Perturbation. | 2020-05-22 | 10.1161/CIRCRESAHA.120.315900 | view | ||
| Kim | Circulation | The Environment-Sensing Aryl-Hydrocarbon Receptor Inhibits the Chondrogenic Fate of Modulated Smooth Muscle Cells in Atherosclerotic Lesions. | 2020-05-22 | 10.1161/CIRCULATIONAHA.120.045981 | view | ||
| Song | J. Med. Virol. | Systematic Analysis of ACE2 and TMPRSS2 Expression in Salivary Glands Reveals Underlying Transmission Mechanism Caused by SARS-CoV-2. | 2020-05-22 | 10.1002/jmv.26045 | view | ||
| Corbin | Sci Immunol | IRF5 guides monocytes toward an inflammatory CD11c+ macrophage phenotype and promotes intestinal inflammation. | 2020-05-22 | 10.1126/sciimmunol.aax6085 | view | ||
| Sato | Sci Rep | Characterization of radioresistant epithelial stem cell heterogeneity in the damaged mouse intestine. | 2020-05-22 | 10.1038/s41598-020-64987-1 | view | ||
| Wang | Nat Commun | Single-cell analysis of murine fibroblasts identifies neonatal to adult switching that regulates cardiomyocyte maturation. | 2020-05-22 | 10.1038/s41467-020-16204-w | view | ||
| Luo | Trends Plant Sci. | Single-Cell Genomics and Epigenomics: Technologies and Applications in Plants. | 2020-05-22 | 10.1016/j.tplants.2020.04.016 | view | ||
| Shao | Protein Cell | New avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data. | 2020-05-21 | 10.1007/s13238-020-00727-5 | 1 | view | |
| Bai | ACS Nano | An Integrated Dielectrophoresis -Trapping and Nanowell Transfer Approach to Enable Double-Sub-Poisson Single-Cell RNA-Sequencing. | 2020-05-21 | 10.1021/acsnano.0c02953 | view | ||
| Zhang | Bioinformatics | scTPA: A web tool for single-cell transcriptome analysis of pathway activation signatures. | 2020-05-21 | 10.1093/bioinformatics/btaa532 | view | ||
| Patel | Proc. Natl. Acad. Sci. U.S.A. | Molecular taxonomy of human ocular outflow tissues defined by single-cell transcriptomics. | 2020-05-21 | 10.1073/pnas.2001896117 | view | ||
| Manialawy | J. Biol. Chem. | The magnesium transporter NIPAL1 is a pancreatic islet-expressed protein that conditionally impacts insulin secretion. | 2020-05-21 | 10.1074/jbc.RA120.013277 | view | ||
| Soliman | Matrix Biol. | Cardiac fibroblast diversity in health and disease. | 2020-05-21 | 10.1016/j.matbio.2020.05.003 | view | ||
| Sebastian | Cancers (Basel) | Single-Cell Transcriptomic Analysis of Tumor-Derived Fibroblasts and Normal Tissue-Resident Fibroblasts Reveals Fibroblast Heterogeneity in Breast Cancer. | 2020-05-21 | 10.3390/cancers12051307 | view | ||
| Adhyatmika | Pharmaceutics | Osteoprotegerin is More than a Possible Serum Marker in Liver Fibrosis: A Study into its Function in Human and Murine Liver. | 2020-05-21 | 10.3390/pharmaceutics12050471 | view | ||
| Yeo | Cell Stem Cell | A Multiplexed Barcodelet Single-Cell RNA-Seq Approach Elucidates Combinatorial Signaling Pathways that Drive ESC Differentiation. | 2020-05-21 | 10.1016/j.stem.2020.04.020 | view | ||
| Zhang | J Vis Exp | High Throughput Yeast Strain Phenotyping with Droplet-Based RNA Sequencing. | 2020-05-21 | 10.3791/61014 | view | ||
| Hua | Circulation | Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis. | 2020-05-20 | 10.1161/CIRCULATIONAHA.119.043545 | view | ||
| Wang | Bioengineered | Dendritic cells in tumor microenvironment promoted the neuropathic pain via paracrine inflammatory and growth factors. | 2020-05-20 | 10.1080/21655979.2020.1771068 | view | ||
| Ni | Immunity | Single-Cell RNA Sequencing of Tumor-Infiltrating NK Cells Reveals that Inhibition of Transcription Factor HIF-1α Unleashes NK Cell Activity. | 2020-05-20 | 10.1016/j.immuni.2020.05.001 | view | ||
| Bian | Nature | Deciphering human macrophage development at single-cell resolution. | 2020-05-20 | 10.1038/s41586-020-2316-7 | view | ||
| Mandric | iScience | BATMAN: Fast and Accurate Integration of Single-Cell RNA-Seq Datasets via Minimum-Weight Matching. | 2020-05-20 | 10.1016/j.isci.2020.101185 | view | ||
| Xu | Anal. Chem. | A Highly Sensitive, Accurate and Automated Single-cell RNA Sequencing Platform with Digital Microfluidics. | 2020-05-19 | 10.1021/acs.analchem.0c01613 | view | ||
| Ayturk | J. Bone Miner. Res. | SINGLE CELL RNA SEQUENCING OF CALVARIAL AND LONG BONE ENDOCORTICAL CELLS. | 2020-05-19 | 10.1002/jbmr.4052 | view | ||
| Goldfarbmuren | Nat Commun | Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium. | 2020-05-19 | 10.1038/s41467-020-16239-z | 1 | view | |
| Macosko | Nat. Biotechnol. | Single-cell RNA sequencing at isoform resolution. | 2020-05-19 | 10.1038/s41587-020-0553-9 | view | ||
| Ovchinnikova | Genome Res. | Exploring dimension-reduced embeddings with Sleepwalk. | 2020-05-19 | 10.1101/gr.251447.119 | view | ||
| Xiong | Curr Cardiol Rep | Single-Cell Transcriptomic Analysis of Cardiac Progenitor Differentiation. | 2020-05-19 | 10.1007/s11886-020-01285-2 | view | ||
| Milner | Immunity | Heterogenous Populations of Tissue-Resident CD8+ T Cells Are Generated in Response to Infection and Malignancy. | 2020-05-19 | 10.1016/j.immuni.2020.04.007 | view | ||
| Davidson | Cell Rep | Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth. | 2020-05-19 | 10.1016/j.celrep.2020.107628 | view | ||
| Ding | Cell Rep | Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis. | 2020-05-19 | 10.1016/j.celrep.2020.107648 | view | ||
| Riccetti | Matrix Biol. | The Elephant in the Lung: Integrating lineage-tracing, molecular markers, and single cell sequencing data to identify distinct fibroblast populations during lung development and regeneration. | 2020-05-19 | 10.1016/j.matbio.2020.05.002 | view | ||
| Jeong | Comput Biol Chem | Effective single-cell clustering through ensemble feature selection and similarity measurements. | 2020-05-19 | 10.1016/j.compbiolchem.2020.107283 | view | ||
| Jariani | Elife | A new protocol for single-cell RNA-seq reveals stochastic gene expression during lag phase in budding yeast. | 2020-05-18 | 10.7554/eLife.55320 | view | ||
| Inclan-Rico | PLoS Pathog. | Trichinella spiralis-induced mastocytosis and erythropoiesis are simultaneously supported by a bipotent mast cell/erythrocyte precursor cell. | 2020-05-18 | 10.1371/journal.ppat.1008579 | view | ||
| Ma | Nucleic Acids Res. | IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq. | 2020-05-18 | 10.1093/nar/gkaa394 | view | ||
| Knudsen | Gut | Targeting dual signalling pathways in concert with immune checkpoints for the treatment of pancreatic cancer. | 2020-05-18 | 10.1136/gutjnl-2020-321000 | view | ||
| Miao | Nat. Methods | Putative cell type discovery from single-cell gene expression data. | 2020-05-18 | 10.1038/s41592-020-0825-9 | view | ||
| Wingo | Nat. Neurosci. | Shared proteomic effects of cerebral atherosclerosis and Alzheimer's disease on the human brain. | 2020-05-18 | 10.1038/s41593-020-0635-5 | view | ||
| Cao | Cell | Potent neutralizing antibodies against SARS-CoV-2 identified by high-throughput single-cell sequencing of convalescent patients' B cells. | 2020-05-18 | 10.1016/j.cell.2020.05.025 | view | ||
| Huang | Gene | Single-cell profiling reveals sex diversity in human renal proximal tubules. | 2020-05-18 | 10.1016/j.gene.2020.144790 | view | ||
| Schulz | iScience | Cellular and Molecular Changes of Brain Metastases-Associated Myeloid Cells during Disease Progression and Therapeutic Response. | 2020-05-18 | 10.1016/j.isci.2020.101178 | view | ||
| Collins | Clin Transl Sci | Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers. | 2020-05-16 | 10.1111/cts.12795 | view | ||
| Grønbech | Bioinformatics | scVAE: Variational auto-encoders for single-cell gene expression data. | 2020-05-16 | 10.1093/bioinformatics/btaa293 | view | ||
| Smith | Dev. Cell | Cigarette smoke exposure and inflammatory signaling increase the expression of the SARS-CoV-2 receptor ACE2 in the respiratory tract. | 2020-05-16 | 10.1016/j.devcel.2020.05.012 | view | ||
| Mitsialis | Gastroenterology | Single-Cell Analyses of Colon and Blood Reveal Distinct Immune Cell Signatures of Ulcerative Colitis and Crohn's Disease. | 2020-05-16 | 10.1053/j.gastro.2020.04.074 | view | ||
| Li | Int. J. Radiat. Oncol. Biol. Phys. | Radiation-enhanced expression of CCL22 in nasopharyngeal carcinoma is associated with CCR4+ CD8 T cell recruitment. | 2020-05-16 | 10.1016/j.ijrobp.2020.05.001 | view | ||
| Ekiz | BMC Bioinformatics | CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments. | 2020-05-15 | 10.1186/s12859-020-3538-2 | view | ||
| Kurd | Sci Immunol | Early precursors and molecular determinants of tissue-resident memory CD8+ T lymphocytes revealed by single-cell RNA sequencing. | 2020-05-15 | 10.1126/sciimmunol.aaz6894 | view | ||
| Tiklová | Nat Commun | Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson's disease. | 2020-05-15 | 10.1038/s41467-020-16225-5 | view | ||
| Johnston | Gene | Nascent transcript and single-cell RNA-seq analysis defines the mechanism of action of the LSD1 inhibitor INCB059872 in myeloid leukemia. | 2020-05-15 | 10.1016/j.gene.2020.144758 | view | ||
| Xu | medRxiv | Single-cell Transcriptome Analysis Indicates New Potential Regulation Mechanism of ACE2 and NPs signaling among heart failure patients infected with SARS-CoV-2. | 2020-05-15 | 10.1101/2020.04.30.20081257 | view | ||
| Yang | Elife | Single-cell transcriptome reveals the novel role of T-bet in suppressing the immature NK gene signature. | 2020-05-14 | 10.7554/eLife.51339 | view | ||
| Björn | Genes (Basel) | Single-Cell RNA Sequencing of Hematopoietic Stem and Progenitor Cells Treated with Gemcitabine and Carboplatin. | 2020-05-14 | 10.3390/genes11050549 | view | ||
| Singh | bioRxiv | Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection. | 2020-05-14 | 10.1101/2020.05.13.092536 | view | ||
| Baslan | Elife | Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing. | 2020-05-13 | 10.7554/eLife.51480 | view | ||
| Shi | PLoS Biol. | Vascularized human cortical organoids (vOrganoids) model cortical development in vivo. | 2020-05-13 | 10.1371/journal.pbio.3000705 | view | ||
| Park | Exp. Mol. Med. | MAPS-seq: magnetic bead-assisted parallel single-cell gene expression profiling. | 2020-05-13 | 10.1038/s12276-020-0433-x | view | ||
| Bingham | Matrix Biol. | Spatial-omics: Novel Approaches to Probe Cell Heterogeneity and Extracellular Matrix Biology. | 2020-05-13 | 10.1016/j.matbio.2020.04.004 | 1 | view | |
| Ye | Oncoimmunology | Endogenous retroviral proteins provide an immunodominant but not requisite antigen in a murine immunotherapy tumor model. | 2020-05-13 | 10.1080/2162402X.2020.1758602 | view | ||
| Tattikota | Elife | A single-cell survey of Drosophila blood. | 2020-05-12 | 10.7554/eLife.54818 | 1 | view | |
| Fava | JCI Insight | Integrated urine proteomics and renal single-cell genomics identify an interferon-γ response gradient in lupus nephritis. | 2020-05-12 | 10.1172/jci.insight.138345 | view | ||
| Vobořil | Nat Commun | Toll-like receptor signaling in thymic epithelium controls monocyte-derived dendritic cell recruitment and Treg generation. | 2020-05-12 | 10.1038/s41467-020-16081-3 | view | ||
| Notter | Mol. Psychiatry | Neuronal activity increases translocator protein (TSPO) levels. | 2020-05-12 | 10.1038/s41380-020-0745-1 | view | ||
| Liao | Nat. Med. | Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19. | 2020-05-12 | 10.1038/s41591-020-0901-9 | view | ||
| Chen | Bioinformatics | An ultrasensitive T-cell receptor detection method for TCR-Seq and RNA-Seq data. | 2020-05-12 | 10.1093/bioinformatics/btaa432 | view | ||
| Vink | Cell Rep | Iterative Single-Cell Analyses Define the Transcriptome of the First Functional Hematopoietic Stem Cells. | 2020-05-12 | 10.1016/j.celrep.2020.107627 | 1 | view | |
| Zhu | Blood | Developmental trajectory of pre-hematopoietic stem cell formation from endothelium. | 2020-05-11 | 10.1182/blood.2020004801 | view | ||
| Erbe | Nucleic Acids Res. | Matrix factorization and transfer learning uncover regulatory biology across multiple single-cell ATAC-seq data sets. | 2020-05-11 | 10.1093/nar/gkaa349 | view | ||
| Hu | BMC Bioinformatics | SCeQTL: an R package for identifying eQTL from single-cell parallel sequencing data. | 2020-05-11 | 10.1186/s12859-020-3534-6 | view | ||
| Fiock | eNeuro | Increased Tau Expression Correlates with Neuronal Maturation in the Developing Human Cerebral Cortex. | 2020-05-11 | 10.1523/ENEURO.0058-20.2020 | view | ||
| Li | Nat Commun | Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis. | 2020-05-11 | 10.1038/s41467-020-15851-3 | 11 | view | |
| Adam | Nat. Cell Biol. | NFI transcription factors provide chromatin access to maintain stem cell identity while preventing unintended lineage fate choices. | 2020-05-11 | 10.1038/s41556-020-0513-0 | view | ||
| Chi | Genes (Basel) | Sparsity-Penalized Stacked Denoising Autoencoders for Imputing Single-Cell RNA-Seq Data. | 2020-05-11 | 10.3390/genes11050532 | view | ||
| Katebi | iScience | Random Parametric Perturbations of Gene Regulatory Circuit Uncover State Transitions in Cell Cycle. | 2020-05-11 | 10.1016/j.isci.2020.101150 | view | ||
| Xi | Cell Stem Cell | A Human Skeletal Muscle Atlas Identifies the Trajectories of Stem and Progenitor Cells across Development and from Human Pluripotent Stem Cells. | 2020-05-10 | 10.1016/j.stem.2020.04.017 | view | ||
| Corridoni | Inflamm. Bowel Dis. | Inflammatory Bowel Disease Through the Lens of Single-cell RNA-seq Technologies. | 2020-05-09 | 10.1093/ibd/izaa089 | view | ||
| Kim | Nat Commun | Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma. | 2020-05-08 | 10.1038/s41467-020-16164-1 | view | ||
| Mazzu | Mol Oncol | Ribonucleotide reductase small subunit M2 is a master driver of aggressive prostate cancer. | 2020-05-08 | 10.1002/1878-0261.12706 | view | ||
| Federico | Nanomaterials (Basel) | Transcriptomics in Toxicogenomics, Part II: Preprocessing and Differential Expression Analysis for High Quality Data. | 2020-05-08 | 10.3390/nano10050903 | view | ||
| Bost | Cell | Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients. | 2020-05-08 | 10.1016/j.cell.2020.05.006 | view | ||
| Wang | Nucleic Acids Res. | BREM-SC: a bayesian random effects mixture model for joint clustering single cell multi-omics data. | 2020-05-07 | 10.1093/nar/gkaa314 | view | ||
| Chakraborty | Cell Biol. Int. | Single-cell sequencing of miRNAs: A modified technology. | 2020-05-07 | 10.1002/cbin.11376 | view | ||
| Dambroise | J. Bone Miner. Res. | Fgfr3 is a positive regulator of osteoblast expansion and differentiation during zebrafish skull vault development. | 2020-05-07 | 10.1002/jbmr.4042 | view | ||
| Uchigashima | J. Biol. Chem. | Neuroligin3 splice isoforms shape inhibitory synaptic function in the mouse hippocampus. | 2020-05-07 | 10.1074/jbc.AC120.012571 | view | ||
| Kim | Nat Commun | Somatic mTOR mutation in clonally expanded T lymphocytes associated with chronic graft versus host disease. | 2020-05-07 | 10.1038/s41467-020-16115-w | view | ||
| Nazaraliyev | Curr. Opin. Hematol. | In-vivo differentiation of adult hematopoietic stem cells from a single-cell point of view. | 2020-05-07 | 10.1097/MOH.0000000000000587 | view | ||
| Shu | Mol. Cell | Synthetic Lethal and Resistance Interactions with BET Bromodomain Inhibitors in Triple-Negative Breast Cancer. | 2020-05-07 | 10.1016/j.molcel.2020.04.027 | view | ||
| Ravindra | bioRxiv | Single-cell longitudinal analysis of SARS-CoV-2 infection in human bronchial epithelial cells. | 2020-05-07 | 10.1101/2020.05.06.081695 | view | ||
| Bobyn | BMC Med. Genet. | Ancestry and frequency of genetic variants in the general population are confounders in the characterization of germline variants linked to cancer. | 2020-05-06 | 10.1186/s12881-020-01033-x | view | ||
| Marquina-Sanchez | Genome Biol. | Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets. | 2020-05-06 | 10.1186/s13059-020-02006-2 | view | ||
| Leir | Cell Tissue Res. | An organoid model to assay the role of CFTR in the human epididymis epithelium. | 2020-05-06 | 10.1007/s00441-020-03208-7 | view | ||
| Galow | Cells | Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mice. | 2020-05-06 | 10.3390/cells9051144 | view | ||
| Romanov | Nature | Molecular design of hypothalamus development. | 2020-05-06 | 10.1038/s41586-020-2266-0 | view | ||
| Xu | J Mol Cell Biol | Landscape of genomic imprinting and its functions in the mouse mammary gland. | 2020-05-05 | 10.1093/jmcb/mjaa020 | view | ||
| Heiser | Cell Rep | A Quantitative Framework for Evaluating Single-Cell Data Structure Preservation by Dimensionality Reduction Techniques. | 2020-05-05 | 10.1016/j.celrep.2020.107576 | view | ||
| Camps | Cell Rep | Interstitial Cell Remodeling Promotes Aberrant Adipogenesis in Dystrophic Muscles. | 2020-05-05 | 10.1016/j.celrep.2020.107597 | view | ||
| Lee | Cell Rep | Defining the Homo- and Heterodimerization Propensities of Metabotropic Glutamate Receptors. | 2020-05-05 | 10.1016/j.celrep.2020.107605 | view | ||
| Cheng | JCI Insight | Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in humanized mice by scRNA-seq. | 2020-05-05 | 10.1172/jci.insight.135344 | view | ||
| Patterson | medRxiv | Disruption of the CCL5/RANTES-CCR5 Pathway Restores Immune Homeostasis and Reduces Plasma Viral Load in Critical COVID-19. | 2020-05-05 | 10.1101/2020.05.02.20084673 | view | ||
| Kagohara | Br. J. Cancer | Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell lines. | 2020-05-04 | 10.1038/s41416-020-0851-5 | view | ||
| Forcato | Brief. Bioinformatics | Computational methods for the integrative analysis of single-cell data. | 2020-05-04 | 10.1093/bib/bbaa042 | view | ||
| Ran | Bioinformatics | scDoc: correcting drop-out events in single-cell RNA-seq data. | 2020-05-04 | 10.1093/bioinformatics/btaa283 | view | ||
| Lu | Pediatr. Res. | Rho/SMAD/mTOR triple inhibition enables long-term expansion of human neonatal tracheal aspirate-derived airway basal cell-like cells. | 2020-05-04 | 10.1038/s41390-020-0925-3 | 1 | view | |
| Joe | BMC Bioinformatics | Prediction model construction of mouse stem cell pluripotency using CpG and non-CpG DNA methylation markers. | 2020-05-04 | 10.1186/s12859-020-3448-3 | view | ||
| Ligon | Mucosal Immunol | Single cell and tissue-transcriptomic analysis of murine bladders reveals age- and TNFα-dependent but microbiota-independent tertiary lymphoid tissue formation. | 2020-05-04 | 10.1038/s41385-020-0290-x | view | ||
| Heaton | Nat. Methods | Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes. | 2020-05-04 | 10.1038/s41592-020-0820-1 | view | ||
| Wang | Cell Res. | Transdifferentiation of tumor infiltrating innate lymphoid cells during progression of colorectal cancer. | 2020-05-04 | 10.1038/s41422-020-0312-y | view | ||
| Dong | Nat. Cell Biol. | Differentiation of transplanted haematopoietic stem cells tracked by single-cell transcriptomic analysis. | 2020-05-04 | 10.1038/s41556-020-0512-1 | view | ||
| Ge | Cell. Mol. Life Sci. | Dissecting the initiation of female meiosis in the mouse at single-cell resolution. | 2020-05-04 | 10.1007/s00018-020-03533-8 | view | ||
| Gandhi | Dev. Cell | Reprogramming Axial Level Identity to Rescue Neural-Crest-Related Congenital Heart Defects. | 2020-05-04 | 10.1016/j.devcel.2020.04.005 | view | ||
| Choi | Cells | Single-Cell RNA Sequencing and Its Combination with Protein and DNA Analyses. | 2020-05-04 | 10.3390/cells9051130 | view | ||
| von Buchholtz | Pain | Assigning transcriptomic class in the trigeminal ganglion using multiplex in situ hybridization and machine learning. | 2020-05-04 | 10.1097/j.pain.0000000000001911 | view | ||
| Thiry | Neuroscience | Characterization of human iPSC-derived spinal motor neurons by single-cell RNA sequencing. | 2020-05-04 | 10.1016/j.neuroscience.2020.04.041 | view | ||
| Jardine | Mol. Immunol. | Reconstructing human DC, monocyte and macrophage development in utero using single cell technologies. | 2020-05-04 | 10.1016/j.molimm.2020.04.023 | view | ||
| Do | iScience | Sphetcher: Spherical Thresholding Improves Sketching of Single-Cell Transcriptomic Heterogeneity. | 2020-05-04 | 10.1016/j.isci.2020.101126 | view | ||
| Bockerstett | Cell Mol Gastroenterol Hepatol | Interleukin 27 Protects from Gastric Atrophy and Metaplasia during Chronic Autoimmune Gastritis. | 2020-05-03 | 10.1016/j.jcmgh.2020.04.014 | view | ||
| Choueiri | J. Natl. Cancer Inst. | Summary from the First Kidney Cancer Research Summit, September 12-13, 2019: A Focus on Translational Research. | 2020-05-02 | 10.1093/jnci/djaa064 | view | ||
| Lu | Life Sci Alliance | Dynamic changes in the regulatory T-cell heterogeneity and function by murine IL-2 mutein. | 2020-05-01 | 10.26508/lsa.201900520 | view | ||
| Karthaus | Science | Regenerative potential of prostate luminal cells revealed by single-cell analysis. | 2020-05-01 | 10.1126/science.aay0267 | view | ||
| Zhang | J. Immunol. | UHRF1 Controls Thymocyte Fate Decisions through the Epigenetic Regulation of EGR1 Expression. | 2020-05-01 | 10.4049/jimmunol.1901471 | view | ||
| Cook | Nat Commun | Context specificity of the EMT transcriptional response. | 2020-05-01 | 10.1038/s41467-020-16066-2 | view | ||
| Chen | Front Genet | Single-Cell Transcriptome Data Clustering via Multinomial Modeling and Adaptive Fuzzy K-Means Algorithm. | 2020-05-01 | 10.3389/fgene.2020.00295 | view | ||
| Podojil | Oncoimmunology | Antibody targeting of B7-H4 enhances the immune response in urothelial carcinoma. | 2020-05-01 | 10.1080/2162402X.2020.1744897 | view | ||
| Stevens | J. Allergy Clin. Immunol. | Activation of the 15-Lipoxygenase Pathway in Aspirin Exacerbated Respiratory Disease. | 2020-05-01 | 10.1016/j.jaci.2020.04.031 | 1 | view | |
| Wen | Cell Discov | Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing. | 2020-05-01 | 10.1038/s41421-020-0168-9 | 116 | view | |
| Ye | Comput Struct Biotechnol J | Discovery of alternative polyadenylation dynamics from single cell types. | 2020-05-01 | 10.1016/j.csbj.2020.04.009 | view | ||
| Ramirez | Front Mol Biosci | Toward Modeling Context-Specific EMT Regulatory Networks Using Temporal Single Cell RNA-Seq Data. | 2020-05-01 | 10.3389/fmolb.2020.00054 | 1 | view | |
| Kim | Neuron | Extraction of Distinct Neuronal Cell Types from within a Genetically Continuous Population. | 2020-05-01 | 10.1016/j.neuron.2020.04.018 | view | ||
| Slyper | Nat. Med. | A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors. | 2020-05-01 | 10.1038/s41591-020-0844-1 | view | ||
| Yuen | Nat. Med. | High systemic and tumor-associated IL-8 correlates with reduced clinical benefit of PD-L1 blockade. | 2020-05-01 | 10.1038/s41591-020-0860-1 | view | ||
| Loving | Front Physiol | Lipid and Lipoprotein Metabolism in Microglia. | 2020-05-01 | 10.3389/fphys.2020.00393 | view | ||
| Yuan | Front Bioeng Biotechnol | Identifying Cell-Type Specific Genes and Expression Rules Based on Single-Cell Transcriptomic Atlas Data. | 2020-05-01 | 10.3389/fbioe.2020.00350 | view | ||
| Qi | Front Genet | Single-Cell Transcriptomic Analysis Reveals Mitochondrial Dynamics in Oocytes of Patients With Polycystic Ovary Syndrome. | 2020-05-01 | 10.3389/fgene.2020.00396 | view | ||
| Zheng | Front Genet | An Adaptive Sparse Subspace Clustering for Cell Type Identification. | 2020-05-01 | 10.3389/fgene.2020.00407 | view | ||
| Liu | Oncoimmunology | Heterogeneity of exhausted T cells in the tumor microenvironment is linked to patient survival following resection in hepatocellular carcinoma. | 2020-05-01 | 10.1080/2162402X.2020.1746573 | view | ||
| Xiang | Front Cardiovasc Med | A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature. | 2020-05-01 | 10.3389/fcvm.2020.00052 | view | ||
| Bravo González-Blas | Mol. Syst. Biol. | Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics. | 2020-05-01 | 10.15252/msb.20209438 | view | ||
| Chen | Curr. Top. Dev. Biol. | Gene regulatory networks during the development of the Drosophila visual system. | 2020-05-01 | 10.1016/bs.ctdb.2020.02.010 | view | ||
| Thong | Front Cell Dev Biol | Hybrid Stem Cell States: Insights Into the Relationship Between Mammary Development and Breast Cancer Using Single-Cell Transcriptomics. | 2020-05-01 | 10.3389/fcell.2020.00288 | view | ||
| Vrahatis | Adv. Exp. Med. Biol. | A Systems Biology Approach for the Identification of Active Molecular Pathways During the Progression of Alzheimer's Disease. | 2020-05-01 | 10.1007/978-3-030-32622-7_28 | view | ||
| Ku | Sci Adv | A single-cell view on alga-virus interactions reveals sequential transcriptional programs and infection states. | 2020-05-01 | 10.1126/sciadv.aba4137 | view | ||
| Pessoa Rodrigues | Sci Adv | Temporal expression of MOF acetyltransferase primes transcription factor networks for erythroid fate. | 2020-05-01 | 10.1126/sciadv.aaz4815 | view | ||
| Cosacak | Neural Regen Res | Alzheimer's disease, neural stem cells and neurogenesis: cellular phase at single-cell level. | 2020-05-01 | 10.4103/1673-5374.268896 | view | ||
| Wilbrey-Clark | Biochem. J. | Cell Atlas technologies and insights into tissue architecture. | 2020-04-30 | 10.1042/BCJ20190341 | view | ||
| Qadir | Proc. Natl. Acad. Sci. U.S.A. | Single-cell resolution analysis of the human pancreatic ductal progenitor cell niche. | 2020-04-30 | 10.1073/pnas.1918314117 | view | ||
| Zhang | Nat Commun | Highly parallel and efficient single cell mRNA sequencing with paired picoliter chambers. | 2020-04-30 | 10.1038/s41467-020-15765-0 | view | ||
| Ramirez | Nat Commun | Single-cell transcriptional networks in differentiating preadipocytes suggest drivers associated with tissue heterogeneity. | 2020-04-30 | 10.1038/s41467-020-16019-9 | view | ||
| Liu | Sci China Life Sci | Single-cell transcriptome analysis of the novel coronavirus (SARS-CoV-2) associated gene ACE2 expression in normal and non-obstructive azoospermia (NOA) human male testes. | 2020-04-30 | 10.1007/s11427-020-1705-0 | view | ||
| Ghinia Tegla | Elife | OTX2 represses sister cell fate choices in the developing retina to promote photoreceptor specification. | 2020-04-29 | 10.7554/eLife.54279 | view | ||
| Jeong | Bioinformatics | PRIME: a probabilistic imputation method to reduce dropout effects in single cell RNA sequencing. | 2020-04-29 | 10.1093/bioinformatics/btaa278 | 1 | view | |
| Toma | eNeuro | Peripheral Nerve Single Cell Analysis Identifies Mesenchymal Ligands that Promote Axonal Growth. | 2020-04-29 | 10.1523/ENEURO.0066-20.2020 | view | ||
| Cang | Nat Commun | Inferring spatial and signaling relationships between cells from single cell transcriptomic data. | 2020-04-29 | 10.1038/s41467-020-15968-5 | view | ||
| Liu | Protein Cell | Integrative analysis of in vivo recording with single-cell RNA-seq data reveals molecular properties of light-sensitive neurons in mouse V1. | 2020-04-29 | 10.1007/s13238-020-00720-y | view | ||
| Zhang | IEEE J Biomed Health Inform | SCCLRR: A Robust Computational Method for Accurate Clustering Single Cell RNA-seq Data. | 2020-04-29 | 10.1109/JBHI.2020.2991172 | view | ||
| Liu | Neurobiol. Dis. | Single-cell RNA-seq analysis of the brainstem of mutant SOD1 mice reveals perturbed cell types and pathways of amyotrophic lateral sclerosis. | 2020-04-29 | 10.1016/j.nbd.2020.104877 | view | ||
| Dragon | J Biomol Tech | Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities. | 2020-04-29 | 10.7171/jbt.20-3102-005 | view | ||
| Hu | Mol. Ther. | Single-Cell Transcriptome Analysis Reveals Intratumoral Heterogeneity in ccRCC, which Results in Different Clinical Outcomes. | 2020-04-29 | 10.1016/j.ymthe.2020.04.023 | view | ||
| Furlan | Blood Adv | IL-2 enhances ex vivo-expanded regulatory T-cell persistence after adoptive transfer. | 2020-04-28 | 10.1182/bloodadvances.2019001248 | view | ||
| Lu | Dev. Cell | Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development. | 2020-04-28 | 10.1016/j.devcel.2020.04.009 | view | ||
| Sharma | Circ. Res. | Regulatory T Cells License Macrophage Pro-Resolving Functions During Atherosclerosis Regression. | 2020-04-27 | 10.1161/CIRCRESAHA.119.316461 | 4 | view | |
| Kakebeen | Elife | Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors. | 2020-04-27 | 10.7554/eLife.52648 | view | ||
| Peng | Annu Rev Genomics Hum Genet | Using Single-Cell and Spatial Transcriptomes to Understand Stem Cell Lineage Specification During Early Embryo Development. | 2020-04-27 | 10.1146/annurev-genom-120219-083220 | view | ||
| Zhang | PLoS Comput. Biol. | Scedar: A scalable Python package for single-cell RNA-seq exploratory data analysis. | 2020-04-27 | 10.1371/journal.pcbi.1007794 | 1 | view | |
| Jevitt | PLoS Biol. | A single-cell atlas of adult Drosophila ovary identifies transcriptional programs and somatic cell lineage regulating oogenesis. | 2020-04-27 | 10.1371/journal.pbio.3000538 | view | ||
| Koth | Development | Runx1 promotes scar deposition and inhibits myocardial proliferation and survival during zebrafish heart regeneration. | 2020-04-27 | 10.1242/dev.186569 | view | ||
| van Zyl | Proc. Natl. Acad. Sci. U.S.A. | Cell atlas of aqueous humor outflow pathways in eyes of humans and four model species provides insight into glaucoma pathogenesis. | 2020-04-27 | 10.1073/pnas.2001250117 | view | ||
| Ajani | Gut | YAP1 mediates gastric adenocarcinoma peritoneal metastases that are attenuated by YAP1 inhibition. | 2020-04-27 | 10.1136/gutjnl-2019-319748 | view | ||
| Ziegler | Cell | SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues. | 2020-04-27 | 10.1016/j.cell.2020.04.035 | view | ||
| Dong | BMC Bioinformatics | GiniClust3: a fast and memory-efficient tool for rare cell type identification. | 2020-04-25 | 10.1186/s12859-020-3482-1 | view | ||
| Rojahn | J. Allergy Clin. Immunol. | Single-cell transcriptomics combined with interstitial fluid proteomics defines cell-type-specific immune regulation in atopic dermatitis. | 2020-04-25 | 10.1016/j.jaci.2020.03.041 | view | ||
| Song | bioRxiv | Expression of ACE2, the SARS-CoV-2 receptor, and TMPRSS2 in prostate epithelial cells. | 2020-04-25 | 10.1101/2020.04.24.056259 | 14 | view | |
| Williams | Circ. Res. | Single Cell RNA Sequencing in Atherosclerosis Research. | 2020-04-24 | 10.1161/CIRCRESAHA.119.315940 | view | ||
| Song | Nucleic Acids Res. | Prediction of condition-specific regulatory genes using machine learning. | 2020-04-24 | 10.1093/nar/gkaa264 | view | ||
| Bauernfeind | Evol. Anthropol. | Metabolic changes in human brain evolution. | 2020-04-24 | 10.1002/evan.21831 | view | ||
| Darby | Bioinformatics | scHLAcount: Allele-specific HLA expression from single-cell gene expression data. | 2020-04-24 | 10.1093/bioinformatics/btaa264 | view | ||
| Jew | Nat Commun | Accurate estimation of cell composition in bulk expression through robust integration of single-cell information. | 2020-04-24 | 10.1038/s41467-020-15816-6 | view | ||
| Cautivo | Curr. Opin. Immunol. | Immune outposts in the adventitia: One foot in sea and one on shore. | 2020-04-24 | 10.1016/j.coi.2020.03.005 | view | ||
| Chang | Molecules | Induced Pluripotent Stem Cell (iPSC)-Based Neurodegenerative Disease Models for Phenotype Recapitulation and Drug Screening. | 2020-04-24 | 10.3390/molecules25082000 | view | ||
| Amann | Int. Immunol. | The origin, fate and function of macrophages in the peripheral nervous system - an update. | 2020-04-23 | 10.1093/intimm/dxaa030 | view | ||
| Abouhashem | Antioxid. Redox Signal. | Is Low Alveolar Type II Cell SOD3 in the Lungs of Elderly Linked to the Observed Severity of COVID-19? | 2020-04-23 | 10.1089/ars.2020.8111 | view | ||
| Huffman | JCI Insight | CCL5 mediates CD40-driven CD4+ T-cell tumor infiltration and immunity. | 2020-04-23 | 10.1172/jci.insight.137263 | view | ||
| Franzén | Bioinformatics | alona: a web server for single cell RNA-seq analysis. | 2020-04-23 | 10.1093/bioinformatics/btaa269 | view | ||
| Ye | Hum. Reprod. | Single-cell multiomic analysis of in vivo and in vitro matured human oocytes. | 2020-04-23 | 10.1093/humrep/deaa044 | view | ||
| Solé-Boldo | Commun Biol | Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming. | 2020-04-23 | 10.1038/s42003-020-0922-4 | view | ||
| Chen | Lab. Invest. | Identification of differentially expressed genes in lung adenocarcinoma cells using single-cell RNA sequencing not detected using traditional RNA sequencing and microarray. | 2020-04-23 | 10.1038/s41374-020-0428-1 | view | ||
| Sungnak | Nat. Med. | SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes. | 2020-04-23 | 10.1038/s41591-020-0868-6 | 66 | view | |
| Wilk | medRxiv | A single-cell atlas of the peripheral immune response to severe COVID-19. | 2020-04-23 | 10.1101/2020.04.17.20069930 | view | ||
| Petrus-Reurer | Stem Cells Transl Med | Preclinical safety studies of human embryonic stem cell-derived retinal pigment epithelial cells for the treatment of age-related macular degeneration. | 2020-04-22 | 10.1002/sctm.19-0396 | view | ||
| Maxwell | Sci Transl Med | Gene-edited human stem cell-derived β cells from a patient with monogenic diabetes reverse preexisting diabetes in mice. | 2020-04-22 | 10.1126/scitranslmed.aax9106 | view | ||
| Bahar Halpern | Nat Commun | Lgr5+ telocytes are a signaling source at the intestinal villus tip. | 2020-04-22 | 10.1038/s41467-020-15714-x | view | ||
| Nieuwenhuis | Nat Commun | Consistent RNA sequencing contamination in GTEx and other data sets. | 2020-04-22 | 10.1038/s41467-020-15821-9 | view | ||
| Qiu | Cells | Association Analysis of Single-Cell RNA Sequencing and Proteomics Reveals a Vital Role of Ca2+ Signaling in the Determination of Skeletal Muscle Development Potential. | 2020-04-22 | 10.3390/cells9041045 | view | ||
| Wei | Nature | Notch signalling drives synovial fibroblast identity and arthritis pathology. | 2020-04-22 | 10.1038/s41586-020-2222-z | view | ||
| Satas | Cell Syst | SCARLET: Single-cell tumor phylogeny inference with copy-number constrained mutation losses. | 2020-04-22 | 10.1016/j.cels.2020.04.001 | view | ||
| Hinkel | J. Am. Coll. Cardiol. | AntimiR-21 Prevents Myocardial Dysfunction in a Pig Model of Ischemia/Reperfusion Injury. | 2020-04-21 | 10.1016/j.jacc.2020.02.041 | 1 | view | |
| Allen | Elife | A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord. | 2020-04-21 | 10.7554/eLife.54074 | view | ||
| Owen | EMBO Rep. | Prostate cancer cell-intrinsic interferon signaling regulates dormancy and metastatic outgrowth in bone. | 2020-04-21 | 10.15252/embr.202050162 | view | ||
| Tsukui | Nat Commun | Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis. | 2020-04-21 | 10.1038/s41467-020-15647-5 | 8 | view | |
| Hor | iScience | Efficient Generation and Transcriptomic Profiling of Human iPSC-Derived Pulmonary Neuroendocrine Cells. | 2020-04-21 | 10.1016/j.isci.2020.101083 | view | ||
| Shang | PLoS Genet. | Leveraging gene co-expression patterns to infer trait-relevant tissues in genome-wide association studies. | 2020-04-20 | 10.1371/journal.pgen.1008734 | 2 | view | |
| Abplanalp | Cardiovasc. Res. | Single cell RNA sequencing reveals profound changes in circulating immune cells in patients with heart failure. | 2020-04-20 | 10.1093/cvr/cvaa101 | 3 | view | |
| Hsiao | Genome Res. | Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis. | 2020-04-20 | 10.1101/gr.247759.118 | view | ||
| Kallio | Cancer Res. | Blocking angiopoietin-2 promotes vascular damage and growth inhibition in mouse tumors treated with small doses of radiation. | 2020-04-20 | 10.1158/0008-5472.CAN-20-0497 | view | ||
| Wang | Sci Rep | Impacts of ciliary neurotrophic factor on the retinal transcriptome in a mouse model of photoreceptor degeneration. | 2020-04-20 | 10.1038/s41598-020-63519-1 | view | ||
| Shin | Dev. Cell | Dysfunction of Hair Follicle Mesenchymal Progenitors Contributes to Age-Associated Hair Loss. | 2020-04-20 | 10.1016/j.devcel.2020.03.019 | view | ||
| Van Nieuwenhove | J. Allergy Clin. Immunol. | Defective SEC61α1 underlies a novel cause of autosomal dominant severe congenital neutropenia. | 2020-04-20 | 10.1016/j.jaci.2020.03.034 | view | ||
| Wygrecka | Cell. Signal. | Between life and death: Epithelial cells in lung pathologies. | 2020-04-20 | 10.1016/j.cellsig.2020.109652 | view | ||
| Chiu | FASEB J. | Identification of calcium and integrin-binding protein 1 as a novel regulator of production of amyloid β peptide using CRISPR/Cas9-based screening system. | 2020-04-19 | 10.1096/fj.201902966RR | view | ||
| Qi | Cancer Immunol. Immunother. | Tumor-infiltrating CD39+CD8+ T cells determine poor prognosis and immune evasion in clear cell renal cell carcinoma patients. | 2020-04-18 | 10.1007/s00262-020-02563-2 | view | ||
| Waickman | EBioMedicine | Transcriptional and clonal characterization of B cell plasmablast diversity following primary and secondary natural DENV infection. | 2020-04-18 | 10.1016/j.ebiom.2020.102733 | view | ||
| Davizon-Castillo | Arterioscler. Thromb. Vasc. Biol. | Megakaryocyte and Platelet Transcriptomics for Discoveries in Human Health and Disease. | 2020-04-16 | 10.1161/ATVBAHA.119.313280 | view | ||
| Krieger | Neuro-oncology | Modeling glioblastoma invasion using human brain organoids and single-cell transcriptomics. | 2020-04-16 | 10.1093/neuonc/noaa091 | view | ||
| Hussain | FEBS J. | Regulation of adipocyte thermogenesis: mechanisms controlling obesity. | 2020-04-16 | 10.1111/febs.15331 | view | ||
| Zhang | Cell | Single-Cell Analyses Inform Mechanisms of Myeloid-Targeted Therapies in Colon Cancer. | 2020-04-16 | 10.1016/j.cell.2020.03.048 | view | ||
| Eisenstein | Nat. Biotechnol. | Publisher Correction: Single-cell RNA-seq analysis software providers scramble to offer solutions. | 2020-04-15 | 10.1038/s41587-020-0510-7 | view | ||
| Luo | Neurosci Bull | Single-Cell RNA Sequencing Reveals Cell-Type-Specific Mechanisms of Neurological Diseases. | 2020-04-15 | 10.1007/s12264-020-00496-5 | view | ||
| Shook | Cell Stem Cell | Dermal Adipocyte Lipolysis and Myofibroblast Conversion Are Required for Efficient Skin Repair. | 2020-04-15 | 10.1016/j.stem.2020.03.013 | view | ||
| Philpott | Curr Opin Chem Biol | Advances and challenges in epigenomic single-cell sequencing applications. | 2020-04-15 | 10.1016/j.cbpa.2020.01.013 | view | ||
| Buschur | Bioinformatics | Causal network perturbations for instance-specific analysis of single cell and disease samples. | 2020-04-15 | 10.1093/bioinformatics/btz949 | view | ||
| Kinaret | Nanomaterials (Basel) | Transcriptomics in Toxicogenomics, Part I: Experimental Design, Technologies, Publicly Available Data, and Regulatory Aspects. | 2020-04-15 | 10.3390/nano10040750 | view | ||
| Smith | Blood Adv | Diversity of peripheral blood human NK cells identified by single-cell RNA sequencing. | 2020-04-14 | 10.1182/bloodadvances.2019000699 | view | ||
| He | Elife | Chloride channels regulate differentiation and barrier functions of the mammalian airway. | 2020-04-14 | 10.7554/eLife.53085 | view | ||
| Zhong | Elife | Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment. | 2020-04-14 | 10.7554/eLife.54695 | view | ||
| Li | Nat Commun | SciBet as a portable and fast single cell type identifier. | 2020-04-14 | 10.1038/s41467-020-15523-2 | view | ||
| Cano-Gamez | Nat Commun | Single-cell transcriptomics identifies an effectorness gradient shaping the response of CD4+ T cells to cytokines. | 2020-04-14 | 10.1038/s41467-020-15543-y | view | ||
| Hanamsagar | Sci Rep | Publisher Correction: An optimized workflow for single-cell transcriptomics and repertoire profiling of purified lymphocytes from clinical samples. | 2020-04-14 | 10.1038/s41598-020-62066-z | 1 | view | |
| Alakwaa | mSystems | Repurposing Didanosine as a Potential Treatment for COVID-19 Using Single-Cell RNA Sequencing Data. | 2020-04-14 | 10.1128/mSystems.00297-20 | view | ||
| Jackson-Jones | Immunity | Stromal Cells Covering Omental Fat-Associated Lymphoid Clusters Trigger Formation of Neutrophil Aggregates to Capture Peritoneal Contaminants. | 2020-04-14 | 10.1016/j.immuni.2020.03.011 | 2 | view | |
| Ydens | Nat. Neurosci. | Profiling peripheral nerve macrophages reveals two macrophage subsets with distinct localization, transcriptome and response to injury. | 2020-04-13 | 10.1038/s41593-020-0618-6 | view | ||
| Lim | Cancer Cell | Advancing Cancer Research and Medicine with Single-Cell Genomics. | 2020-04-13 | 10.1016/j.ccell.2020.03.008 | view | ||
| Camunas-Soler | Cell Metab. | Patch-Seq Links Single-Cell Transcriptomes to Human Islet Dysfunction in Diabetes. | 2020-04-13 | 10.1016/j.cmet.2020.04.005 | 3 | view | |
| Lavaert | Immunity | Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes. | 2020-04-13 | 10.1016/j.immuni.2020.03.019 | view | ||
| Sladitschek | Cell | MorphoSeq: Full Single-Cell Transcriptome Dynamics Up to Gastrulation in a Chordate. | 2020-04-13 | 10.1016/j.cell.2020.03.055 | view | ||
| Wu | Mol. Ther. | CD39 Produced from Human GMSCs Regulates the Balance of Osteoclasts and Osteoblasts through the Wnt/β-Catenin Pathway in Osteoporosis. | 2020-04-11 | 10.1016/j.ymthe.2020.04.003 | view | ||
| Olivares-Chauvet | Int. J. Biochem. Cell Biol. | Inclusion of temporal information in single cell transcriptomics. | 2020-04-10 | 10.1016/j.biocel.2020.105745 | view | ||
| Evans | Stem Cells Transl Med | Alveolar wars: The rise of in vitro models to understand human lung alveolar maintenance, regeneration, and disease. | 2020-04-09 | 10.1002/sctm.19-0433 | 1 | view | |
| Yu | J. Leukoc. Biol. | Unravelling the heterogeneity and dynamic relationships of tumor-infiltrating T cells by single-cell RNA sequencing analysis. | 2020-04-09 | 10.1002/JLB.6MR0320-234R | view | ||
| Wang | Cells | scRNA-seq Profiling of Human Testes Reveals the Presence of the ACE2 Receptor, A Target for SARS-CoV-2 Infection in Spermatogonia, Leydig and Sertoli Cells. | 2020-04-09 | 10.3390/cells9040920 | 20 | view | |
| Chen | Stem Cell Reports | Transcriptome Dynamics of Hematopoietic Stem Cell Formation Revealed Using a Combinatorial Runx1 and Ly6a Reporter System. | 2020-04-09 | 10.1016/j.stemcr.2020.03.020 | view | ||
| Krämer | Mol Oncol | Cell type-specific transcriptomics of esophageal adenocarcinoma as a scalable alternative for single cell transcriptomics. | 2020-04-07 | 10.1002/1878-0261.12680 | view | ||
| Naessens | Am. J. Respir. Crit. Care Med. | Human Lung Conventional Dendritic Cells Orchestrate Lymphoid Neogenesis During COPD. | 2020-04-07 | 10.1164/rccm.201906-1123OC | 2 | view | |
| Mair | Cell Rep | A Targeted Multi-omic Analysis Approach Measures Protein Expression and Low-Abundance Transcripts on the Single-Cell Level. | 2020-04-07 | 10.1016/j.celrep.2020.03.063 | view | ||
| Estermann | Cell Rep | Insights into Gonadal Sex Differentiation Provided by Single-Cell Transcriptomics in the Chicken Embryo. | 2020-04-07 | 10.1016/j.celrep.2020.03.055 | view | ||
| Rohlenova | Cell Metab. | Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis. | 2020-04-07 | 10.1016/j.cmet.2020.03.009 | 2 | view | |
| He | Biochem. Biophys. Res. Commun. | Adverse effects of nicotine on cardiogenic differentiation from human embryonic stem cells detected by single-cell RNA sequencing. | 2020-04-07 | 10.1016/j.bbrc.2020.03.149 | view | ||
| Fujimoto | PLoS Biol. | Single-cell mapping reveals new markers and functions of lymphatic endothelial cells in lymph nodes. | 2020-04-06 | 10.1371/journal.pbio.3000704 | 2 | view | |
| de Vries | PLoS Pathog. | Integrating GWAS with bulk and single-cell RNA-sequencing reveals a role for LY86 in the anti-Candida host response. | 2020-04-06 | 10.1371/journal.ppat.1008408 | view | ||
| Sun | Stem Cell Res Ther | Single-cell RNA-seq highlights heterogeneity in human primary Wharton's jelly mesenchymal stem/stromal cells cultured in vitro. | 2020-04-06 | 10.1186/s13287-020-01660-4 | view | ||
| Pine | Cancer Discov | Tumor microenvironment is critical for the maintenance of cellular states found in primary glioblastomas. | 2020-04-06 | 10.1158/2159-8290.CD-20-0057 | 1 | view | |
| Ding | Nat. Biotechnol. | Systematic comparison of single-cell and single-nucleus RNA-sequencing methods. | 2020-04-06 | 10.1038/s41587-020-0465-8 | view | ||
| Dekoninck | Cell | Defining the Design Principles of Skin Epidermis Postnatal Growth. | 2020-04-05 | 10.1016/j.cell.2020.03.015 | view | ||
| Di Filippo | Int J Mol Sci | Zeb2 Regulates Myogenic Differentiation in Pluripotent Stem Cells. | 2020-04-05 | 10.3390/ijms21072525 | view | ||
| Wu | Bioinformatics | Joint learning dimension reduction and clustering of single-cell RNA-sequencing data. | 2020-04-04 | 10.1093/bioinformatics/btaa231 | view | ||
| Zemmour | Curr. Opin. Immunol. | CD4+ teff cell heterogeneity: the perspective from single-cell transcriptomics. | 2020-04-04 | 10.1016/j.coi.2020.02.004 | view | ||
| Lukassen | EMBO J. | SARS-CoV-2 receptor ACE2 and TMPRSS2 are primarily expressed in bronchial transient secretory cells. | 2020-04-04 | 10.15252/embj.20105114 | view | ||
| Yang | J. Cell. Physiol. | Long noncoding RNA 2193 regulates meiosis through global epigenetic modification and cytoskeleton organization in pig oocytes. | 2020-04-02 | 10.1002/jcp.29675 | view | ||
| Jun | Commun Biol | Single-cell analysis of a mutant library generated using CRISPR-guided deaminase in human melanoma cells. | 2020-04-02 | 10.1038/s42003-020-0888-2 | 1 | view | |
| Lu | J Mol Diagn | Genomic Analysis of Circulating Tumor Cells at the Single-Cell Level. | 2020-04-02 | 10.1016/j.jmoldx.2020.02.013 | view | ||
| Feng | Mol Metab | Characterizing pancreatic β-cell heterogeneity in the streptozotocin model by single-cell transcriptomic analysis. | 2020-04-02 | 10.1016/j.molmet.2020.100982 | view | ||
| Barruet | Elife | Functionally heterogeneous human satellite cells identified by single cell RNA sequencing. | 2020-04-01 | 10.7554/eLife.51576 | view | ||
| Zemek | Nat Protoc | Bilateral murine tumor models for characterizing the response to immune checkpoint blockade. | 2020-04-01 | 10.1038/s41596-020-0299-3 | view | ||
| Wu | Comput Struct Biotechnol J | Cellular, transcriptomic and isoform heterogeneity of breast cancer cell line revealed by full-length single-cell RNA sequencing. | 2020-04-01 | 10.1016/j.csbj.2020.03.005 | 1 | view | |
| Gibellini | Front Immunol | Single-Cell Approaches to Profile the Response to Immune Checkpoint Inhibitors. | 2020-04-01 | 10.3389/fimmu.2020.00490 | view | ||
| Maier | Nature | A conserved dendritic-cell regulatory program limits antitumour immunity. | 2020-04-01 | 10.1038/s41586-020-2134-y | 1 | view | |
| van der Ven | Adv. Exp. Med. Biol. | Non-coding RNAs in Cardiac Regeneration. | 2020-04-01 | 10.1007/978-981-15-1671-9_9 | view | ||
| Chavkin | Front Cardiovasc Med | Single Cell Analysis in Vascular Biology. | 2020-04-01 | 10.3389/fcvm.2020.00042 | view | ||
| van Essen | PLoS Genet. | Deconstructing cerebellar development cell by cell. | 2020-04-01 | 10.1371/journal.pgen.1008630 | view | ||
| Li | PLoS ONE | The SARS-CoV-2 receptor ACE2 expression of maternal-fetal interface and fetal organs by single-cell transcriptome study. | 2020-04-01 | 10.1371/journal.pone.0230295 | 70 | view | |
| Carmona | Oncoimmunology | Deciphering the transcriptomic landscape of tumor-infiltrating CD8 lymphocytes in B16 melanoma tumors with single-cell RNA-Seq. | 2020-04-01 | 10.1080/2162402X.2020.1737369 | view | ||
| Roulis | Nature | Paracrine orchestration of intestinal tumorigenesis by a mesenchymal niche. | 2020-04-01 | 10.1038/s41586-020-2166-3 | view | ||
| Chen | Comput Struct Biotechnol J | A comparison of methods accounting for batch effects in differential expression analysis of UMI count based single cell RNA sequencing. | 2020-04-01 | 10.1016/j.csbj.2020.03.026 | view | ||
| Paraiso | Front Cell Neurosci | Isolation of Mouse Cerebral Microvasculature for Molecular and Single-Cell Analysis. | 2020-04-01 | 10.3389/fncel.2020.00084 | view | ||
| Mann | Front Immunol | Multiplex T Cell Stimulation Assay Utilizing a T Cell Activation Reporter-Based Detection System. | 2020-04-01 | 10.3389/fimmu.2020.00633 | view | ||
| Liu | J Cancer | Improved Prognostic Prediction of Glioblastoma using a PAS Detected from Single-cell RNA-seq. | 2020-04-01 | 10.7150/jca.44034 | view | ||
| Wang | Adv Sci (Weinh) | Dissolvable Polyacrylamide Beads for High-Throughput Droplet DNA Barcoding. | 2020-04-01 | 10.1002/advs.201903463 | view | ||
| Motwani | Front Immunol | Human Regulatory T Cells From Umbilical Cord Blood Display Increased Repertoire Diversity and Lineage Stability Relative to Adult Peripheral Blood. | 2020-04-01 | 10.3389/fimmu.2020.00611 | view | ||
| Zhang | Front Immunol | Association of Urine sCD163 With Proliferative Lupus Nephritis, Fibrinoid Necrosis, Cellular Crescents and Intrarenal M2 Macrophages. | 2020-04-01 | 10.3389/fimmu.2020.00671 | view | ||
| Ryan | Front Genet | Single-Cell Transcriptomes Reveal a Complex Cellular Landscape in the Middle Ear and Differential Capacities for Acute Response to Infection. | 2020-04-01 | 10.3389/fgene.2020.00358 | view | ||
| Zhao | Cell Discov | Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in human. | 2020-04-01 | 10.1038/s41421-020-0157-z | view | ||
| Ko | J. Heart Lung Transplant. | Single-Cell RNA-seq of Human Cardiomyocytes Revealed DNA Damage Response as a Novel Predictor for Therapeutic Prognosis in Heart Failure Patients with Dilated Cardiomyopathy. | 2020-04-01 | 10.1016/j.healun.2020.01.1155 | view | ||
| Moshkelgosha | J. Heart Lung Transplant. | Uncovering Salient Cellular Heterogeneity in Human Lung Transplantation Using Single-Cell RNA Sequencing. | 2020-04-01 | 10.1016/j.healun.2020.01.1157 | view | ||
| Zhao | J. Heart Lung Transplant. | Single Cell RNA Sequencing of Human Pulmonary Endarterectomy Specimen Reveals Distinct Cell Populations and Gene Profiles. | 2020-04-01 | 10.1016/j.healun.2020.01.1181 | view | ||
| Nykanen | J. Heart Lung Transplant. | Postoperative Heparinization Monitoring by Anti-Xa is More Accurate Than by APTT after Pulmonary Endarterectomy - Role of Increased Systemic and Endothelial Production of Factor VIII. | 2020-04-01 | 10.1016/j.healun.2020.01.1184 | view | ||
| Conrad | J. Heart Lung Transplant. | Use of Single Cell RNA Sequencing to Discern Molecular Pathways of Fibrosis and Predicting Emergence of CLAD. | 2020-04-01 | 10.1016/j.healun.2020.01.313 | view | ||
| Smirnova | J. Heart Lung Transplant. | Single Cell Profiling Identifies Novel B Cell Populations That Drive Chronic Rejection after Lung Transplantation. | 2020-04-01 | 10.1016/j.healun.2020.01.022 | view | ||
| Sen | Sci Adv | Linking indirect effects of cytomegalovirus in transplantation to modulation of monocyte innate immune function. | 2020-04-01 | 10.1126/sciadv.aax9856 | view | ||
| Wang | Brief Funct Genomics | Identifying cell types to interpret scRNA-seq data: how, why and more possibilities. | 2020-03-31 | 10.1093/bfgp/elaa003 | view | ||
| Zhang | Nucleic Acids Res. | Uncovering the key dimensions of high-throughput biomolecular data using deep learning. | 2020-03-31 | 10.1093/nar/gkaa191 | view | ||
| Chen | Cell Rep | Brain Endothelial Cells Are Exquisite Sensors of Age-Related Circulatory Cues. | 2020-03-31 | 10.1016/j.celrep.2020.03.012 | view | ||
| Zhang | Cell Rep | Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog. | 2020-03-31 | 10.1016/j.celrep.2020.03.027 | view | ||
| Wagner | Nat. Rev. Genet. | Lineage tracing meets single-cell omics: opportunities and challenges. | 2020-03-31 | 10.1038/s41576-020-0223-2 | view | ||
| Kiss | Geroscience | Single-cell RNA sequencing identifies senescent cerebromicrovascular endothelial cells in the aged mouse brain. | 2020-03-31 | 10.1007/s11357-020-00177-1 | view | ||
| Zand | Genes (Basel) | Network-Based Single-Cell RNA-Seq Data Imputation Enhances Cell Type Identification. | 2020-03-31 | 10.3390/genes11040377 | view | ||
| Atchison | Am. J. Physiol. Renal Physiol. | Hypertension Induces Glomerulosclerosis in Phospholipase C Epsilon 1 Deficiency. | 2020-03-30 | 10.1152/ajprenal.00541.2019 | view | ||
| Paik | Nat Rev Cardiol | Single-cell RNA sequencing in cardiovascular development, disease and medicine. | 2020-03-30 | 10.1038/s41569-020-0359-y | view | ||
| Replogle | Nat. Biotechnol. | Combinatorial single-cell CRISPR screens by direct guide RNA capture and targeted sequencing. | 2020-03-30 | 10.1038/s41587-020-0470-y | view | ||
| Deng | Aging Cell | Mossy cell synaptic dysfunction causes memory imprecision via miR-128 inhibition of STIM2 in Alzheimer's disease mouse model. | 2020-03-28 | 10.1111/acel.13144 | view | ||
| Martin | Curr Osteoporos Rep | Transcriptomics: a Solution for Renal Osteodystrophy? | 2020-03-28 | 10.1007/s11914-020-00583-6 | view | ||
| Yu | Biochim Biophys Acta Mol Basis Dis | Essential gene expression pattern of head and neck squamous cell carcinoma revealed by tumor-specific expression rule based on single-cell RNA sequencing. | 2020-03-28 | 10.1016/j.bbadis.2020.165791 | view | ||
| Du | G3 (Bethesda) | Evaluation of STAR and Kallisto on Single Cell RNA-Seq Data Alignment. | 2020-03-27 | 10.1534/g3.120.401160 | view | ||
| Xu | Nat Commun | Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric mouse brain. | 2020-03-27 | 10.1038/s41467-020-15411-9 | 1 | view | |
| Ma | Nat Commun | Integrative differential expression and gene set enrichment analysis using summary statistics for scRNA-seq studies. | 2020-03-27 | 10.1038/s41467-020-15298-6 | view | ||
| Wu | Nat Rev Nephrol | Tools for the analysis of high-dimensional single-cell RNA sequencing data. | 2020-03-27 | 10.1038/s41581-020-0262-0 | view | ||
| Chapuy | Cells | Single-Cell Protein and RNA Expression Analysis of Mononuclear Phagocytes in Intestinal Mucosa and Mesenteric Lymph Nodes of Ulcerative Colitis and Crohn's Disease Patients. | 2020-03-27 | 10.3390/cells9040813 | view | ||
| Iwanaga | JCI Insight | Host immunology and rational immunotherapy for carbapenem-resistant Klebsiella pneumoniae infection. | 2020-03-26 | 10.1172/jci.insight.135591 | view | ||
| Peired | Sci Transl Med | Acute kidney injury promotes development of papillary renal cell adenoma and carcinoma from renal progenitor cells. | 2020-03-25 | 10.1126/scitranslmed.aaw6003 | view | ||
| Angerer | Bioinformatics | Automatic identification of relevant genes from low-dimensional embeddings of single cell RNAseq data. | 2020-03-24 | 10.1093/bioinformatics/btaa198 | view | ||
| Venkatasubramanian | Bioinformatics | Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF. | 2020-03-24 | 10.1093/bioinformatics/btaa201 | 2 | view | |
| Jiang | Am. J. Respir. Cell Mol. Biol. | Phenotypic Diversity Caused by Differential Expression of SFTPC-Cre Transgenic Alleles. | 2020-03-24 | 10.1165/rcmb.2019-0416MA | view | ||
| Bellissimo | Blood Adv | Runx1 negatively regulates inflammatory cytokine production by neutrophils in response to Toll-like receptor signaling. | 2020-03-24 | 10.1182/bloodadvances.2019000785 | view | ||
| Greaney | Cell Rep | Platform Effects on Regeneration by Pulmonary Basal Cells as Evaluated by Single-Cell RNA Sequencing. | 2020-03-24 | 10.1016/j.celrep.2020.03.004 | view | ||
| Ma | Plant Physiol. | PscB: A Browser to Explore Plant Single Cell RNA-Sequencing Datasets. | 2020-03-24 | 10.1104/pp.20.00250 | view | ||
| Izzo | Nat. Genet. | DNA methylation disruption reshapes the hematopoietic differentiation landscape. | 2020-03-23 | 10.1038/s41588-020-0595-4 | 1 | view | |
| Hoffman | Cancers (Basel) | Analysis of Dual Class I Histone Deacetylase and Lysine Demethylase Inhibitor Domatinostat (4SC-202) on Growth and Cellular and Genomic Landscape of Atypical Teratoid/Rhabdoid. | 2020-03-23 | 10.3390/cancers12030756 | view | ||
| Cuomo | Nat Commun | Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression. | 2020-03-23 | 10.1038/s41467-020-15098-y | view | ||
| Kazer | Nat. Med. | Integrated single-cell analysis of multicellular immune dynamics during hyperacute HIV-1 infection. | 2020-03-23 | 10.1038/s41591-020-0799-2 | 1 | view | |
| Westoby | Genome Biol. | Obstacles to detecting isoforms using full-length scRNA-seq data. | 2020-03-23 | 10.1186/s13059-020-01981-w | view | ||
| Feng | Int J Mol Sci | Dimension Reduction and Clustering Models for Single-Cell RNA Sequencing Data: A Comparative Study. | 2020-03-22 | 10.3390/ijms21062181 | 2 | view | |
| Kimmel | Development | Aging induces aberrant state transition kinetics in murine muscle stem cells. | 2020-03-20 | 10.1242/dev.183855 | 4 | view | |
| Hou | Cell Res. | Embryonic endothelial evolution towards first hematopoietic stem cells revealed by single-cell transcriptomic and functional analyses. | 2020-03-20 | 10.1038/s41422-020-0300-2 | view | ||
| Yifan | J. Mol. Cell. Cardiol. | Visualization of cardiovascular development, physiology and disease at the single-cell level: Opportunities and future challenges. | 2020-03-20 | 10.1016/j.yjmcc.2020.03.005 | view | ||
| Zhang | Yi Chuan | Single-cell sequencing and its application in breast cancer. | 2020-03-20 | 10.16288/j.yczz.19-268 | view | ||
| Qu | Yi Chuan | Applications of single-cell RNA sequencing in virology. | 2020-03-20 | 10.16288/j.yczz.19-223 | view | ||
| Oprescu | iScience | Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration. | 2020-03-20 | 10.1016/j.isci.2020.100993 | view | ||
| Cabello-Aguilar | Nucleic Acids Res. | SingleCellSignalR: inference of intercellular networks from single-cell transcriptomics. | 2020-03-20 | 10.1093/nar/gkaa183 | view | ||
| Smith | BMC Bioinformatics | Standard machine learning approaches outperform deep representation learning on phenotype prediction from transcriptomics data. | 2020-03-20 | 10.1186/s12859-020-3427-8 | view | ||
| Kim | Clin. Cancer Res. | B-cells improve overall survival in HPV-associated squamous cell carcinomas and are activated by radiation and PD-1 blockade. | 2020-03-19 | 10.1158/1078-0432.CCR-19-3211 | view | ||
| Ho | Protein Cell | Single-cell transcriptomic analysis of adult mouse pituitary reveals sexual dimorphism and physiologic demand-induced cellular plasticity. | 2020-03-19 | 10.1007/s13238-020-00705-x | 1 | view | |
| Wang | Cell | Long-Term Expansion of Pancreatic Islet Organoids from Resident Procr+ Progenitors. | 2020-03-19 | 10.1016/j.cell.2020.02.048 | view | ||
| Qi | Biochem. Biophys. Res. Commun. | Single cell RNA sequencing of 13 human tissues identify cell types and receptors of human coronaviruses. | 2020-03-18 | 10.1016/j.bbrc.2020.03.044 | view | ||
| Buchheit | J. Allergy Clin. Immunol. | IL-5Rα marks nasal polyp IgG4 and IgE-expressing cells in aspirin-exacerbated respiratory disease. | 2020-03-18 | 10.1016/j.jaci.2020.02.035 | view | ||
| Hess | Biotechnol. Adv. | Library preparation for next generation sequencing: A review of automation strategies. | 2020-03-18 | 10.1016/j.biotechadv.2020.107537 | view | ||
| Tao | Prog. Neurobiol. | MeCP2 mediates transgenerational transmission of chronic pain. | 2020-03-18 | 10.1016/j.pneurobio.2020.101790 | view | ||
| Duren | Genome Res. | Time course regulatory analysis based on paired expression and chromatin accessibility data. | 2020-03-18 | 10.1101/gr.257063.119 | view | ||
| Liang | Nat Commun | Latent periodic process inference from single-cell RNA-seq data. | 2020-03-18 | 10.1038/s41467-020-15295-9 | view | ||
| Ilsley | Sci Rep | Finding cell-specific expression patterns in the early Ciona embryo with single-cell RNA-seq. | 2020-03-18 | 10.1038/s41598-020-61591-1 | view | ||
| Wuggenig | Commun Biol | Loss of the branched-chain amino acid transporter CD98hc alters the development of colonic macrophages in mice. | 2020-03-18 | 10.1038/s42003-020-0842-3 | view | ||
| Zhu | Proteomics | Single-cell RNA Sequencing in Hematological Diseases. | 2020-03-17 | 10.1002/pmic.201900228 | view | ||
| Shrestha | J. Clin. Invest. | Sel1L-Hrd1 ER-associated degradation maintains β-cell identity via TGFβ signaling. | 2020-03-17 | 10.1172/JCI134874 | view | ||
| Nam | Neural Dev | Lrig1 expression prospectively identifies stem cells in the ventricular-subventricular zone that are neurogenic throughout adult life. | 2020-03-17 | 10.1186/s13064-020-00139-5 | 2 | view | |
| Haensel | Cell Rep | Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics. | 2020-03-17 | 10.1016/j.celrep.2020.02.091 | view | ||
| Suffee | Circ. Res. | Reactivation of the Epicardium at the Origin of Myocardial Fibro-Fatty Infiltration During the Atrial Cardiomyopathy. | 2020-03-16 | 10.1161/CIRCRESAHA.119.316251 | 2 | view | |
| Svensson | Bioinformatics | Interpretable factor models of single-cell RNA-seq via variational autoencoders. | 2020-03-16 | 10.1093/bioinformatics/btaa169 | 3 | view | |
| Hu | Genome Biol Evol | Significant Evolutionary Constraints on Neuron Cells Revealed by Single Cell Transcriptomics. | 2020-03-16 | 10.1093/gbe/evaa054 | view | ||
| Stamataki | Immunology | The Liver as an Immunological Barrier Redefined by Single Cell Analysis. | 2020-03-16 | 10.1111/imm.13193 | view | ||
| Basilico | Nat Commun | Dissecting the early steps of MLL induced leukaemogenic transformation using a mouse model of AML. | 2020-03-16 | 10.1038/s41467-020-15220-0 | 1 | view | |
| Slevin | J Crohns Colitis | Lymphocyte activation gene (LAG)-3 is associated with mucosal inflammation and disease activity in ulcerative colitis. | 2020-03-16 | 10.1093/ecco-jcc/jjaa054 | view | ||
| Lei | J. Comput. Biol. | Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data. | 2020-03-16 | 10.1089/cmb.2019.0302 | 6 | view | |
| Torres | Int J Mol Sci | Recent Advances in Practical Methods for Liver Cell Biology: A Short Overview. | 2020-03-16 | 10.3390/ijms21062027 | view | ||
| McCarthy | Nat. Methods | Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes. | 2020-03-16 | 10.1038/s41592-020-0766-3 | 2 | view | |
| Bayraktar | Nat. Neurosci. | Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map. | 2020-03-16 | 10.1038/s41593-020-0602-1 | view | ||
| Hum | Cancers (Basel) | Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo. | 2020-03-14 | 10.3390/cancers12030690 | view | ||
| Deng | Cell. Mol. Life Sci. | Single-cell gene profiling and lineage tracing analyses revealed novel mechanisms of endothelial repair by progenitors. | 2020-03-13 | 10.1007/s00018-020-03480-4 | view | ||
| Lefort | Biochem. Soc. Trans. | Targeting BMP signaling in the bone marrow microenvironment of myeloid leukemia. | 2020-03-13 | 10.1042/BST20190223 | view | ||
| Hoffman | Commun Biol | Single-cell RNA sequencing reveals a heterogeneous response to Glucocorticoids in breast cancer cells. | 2020-03-13 | 10.1038/s42003-020-0837-0 | view | ||
| Cattenoz | EMBO J. | Temporal specificity and heterogeneity of Drosophila immune cells. | 2020-03-12 | 10.15252/embj.2020104486 | 4 | view | |
| Zheng | Compr Physiol | Single-Cell Transcriptomic Analysis. | 2020-03-12 | 10.1002/cphy.c190037 | view | ||
| Ha | Small | Mass Cytometry and Single-Cell RNA-seq Profiling of the Heterogeneity in Human Peripheral Blood Mononuclear Cells Interacting with Silver Nanoparticles. | 2020-03-12 | 10.1002/smll.201907674 | view | ||
| Baumann | Development | Role of nutrient-driven O-GlcNAc-posttranslational modification in pancreatic exocrine and endocrine islet development. | 2020-03-12 | 10.1242/dev.186643 | view | ||
| Liu | J. Neurosci. Res. | Single-cell RNA sequencing study of retinal immune regulators identified CD47 and CD59a expression in photoreceptors-Implications in subretinal immune regulation. | 2020-03-12 | 10.1002/jnr.24618 | view | ||
| Zou | Front Med | Single-cell RNA-seq data analysis on the receptor ACE2 expression reveals the potential risk of different human organs vulnerable to 2019-nCoV infection. | 2020-03-12 | 10.1007/s11684-020-0754-0 | view | ||
| Chen | Bioinformatics | RobustClone: A robust PCA method for tumor clone and evolution inference from single-cell sequencing data. | 2020-03-11 | 10.1093/bioinformatics/btaa172 | view | ||
| Ekiz | J. Immunol. | T Cell-Expressed microRNA-155 Reduces Lifespan in a Mouse Model of Age-Related Chronic Inflammation. | 2020-03-11 | 10.4049/jimmunol.1901484 | view | ||
| Nicolet | Proc. Natl. Acad. Sci. U.S.A. | CD29 identifies IFN-γ-producing human CD8+ T cells with an increased cytotoxic potential. | 2020-03-11 | 10.1073/pnas.1913940117 | view | ||
| Calandrini | Nat Commun | An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity. | 2020-03-11 | 10.1038/s41467-020-15155-6 | view | ||
| Ediriwickrema | Blood Adv | Single-cell mutational profiling enhances the clinical evaluation of AML MRD. | 2020-03-10 | 10.1182/bloodadvances.2019001181 | view | ||
| Roberts | Circ. Res. | Deep Phenotyping by Mass Cytometry and Single Cell RNA-Sequencing Reveals LYN Regulated Signaling Profiles Underlying Monocyte Subset Heterogeneity and Lifespan. | 2020-03-10 | 10.1161/CIRCRESAHA.119.315708 | view | ||
| Alteio | mSystems | Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil. | 2020-03-10 | 10.1128/mSystems.00768-19 | 1 | view | |
| Chong | Nat Commun | Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes. | 2020-03-10 | 10.1038/s41467-020-14968-9 | view | ||
| De Micheli | Cell Rep | Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration. | 2020-03-10 | 10.1016/j.celrep.2020.02.067 | view | ||
| Liu | Micromachines (Basel) | Cell Lysis Based on an Oscillating Microbubble Array. | 2020-03-10 | 10.3390/mi11030288 | view | ||
| Zou | Cancers (Basel) | Molecular Heterogeneity and Cellular Diversity: Implications for Precision Treatment in Medulloblastoma. | 2020-03-10 | 10.3390/cancers12030643 | view | ||
| Fang | IEEE/ACM Trans Comput Biol Bioinform | An Effective Biclustering-based Framework for Identifying Cell Subpopulations from scRNA-seq Data. | 2020-03-10 | 10.1109/TCBB.2020.2979717 | view | ||
| van der Wijst | Elife | The single-cell eQTLGen consortium. | 2020-03-09 | 10.7554/eLife.52155 | view | ||
| Wakhloo | Nat Commun | Functional hypoxia drives neuroplasticity and neurogenesis via brain erythropoietin. | 2020-03-09 | 10.1038/s41467-020-15041-1 | view | ||
| Tsuyuzaki | Nat Commun | Time-lapse single-cell transcriptomics reveals modulation of histone H3 for dormancy breaking in fission yeast. | 2020-03-09 | 10.1038/s41467-020-15060-y | view | ||
| Giladi | Nat. Biotechnol. | Dissecting cellular crosstalk by sequencing physically interacting cells. | 2020-03-09 | 10.1038/s41587-020-0442-2 | view | ||
| Fu | J Genet Genomics | Single-cell RNA sequencing identifies novel cell types in Drosophila blood. | 2020-03-09 | 10.1016/j.jgg.2020.02.004 | view | ||
| Terkelsen | Hepatology | Transcriptional dynamics of hepatic sinusoid-associated cells after liver injury. | 2020-03-07 | 10.1002/hep.31215 | view | ||
| Chung | Bioinformatics | Statistical significance of cluster membership for unsupervised evaluation of single cell identities. | 2020-03-06 | 10.1093/bioinformatics/btaa087 | view | ||
| Zhu | Hum. Gene Ther. | Single-Cell Transcriptome Analysis of Mouse Liver Cell-Specific Tropism and Transcriptional Dysregulation Following Intravenous Administration of AAVrh.10 Vectors. | 2020-03-06 | 10.1089/hum.2019.366 | view | ||
| Künzli | Sci Immunol | Long-lived T follicular helper cells retain plasticity and help sustain humoral immunity. | 2020-03-06 | 10.1126/sciimmunol.aay5552 | 9 | view | |
| Ryan | Stem Cell Reports | Neuroinflammation and EIF2 Signaling Persist despite Antiretroviral Treatment in an hiPSC Tri-culture Model of HIV Infection. | 2020-03-06 | 10.1016/j.stemcr.2020.02.010 | view | ||
| Yang | Genome Biol. | Decontamination of ambient RNA in single-cell RNA-seq with DecontX. | 2020-03-05 | 10.1186/s13059-020-1950-6 | view | ||
| Van den Berge | Nat Commun | Trajectory-based differential expression analysis for single-cell sequencing data. | 2020-03-05 | 10.1038/s41467-020-14766-3 | view | ||
| Batiuk | Nat Commun | Identification of region-specific astrocyte subtypes at single cell resolution. | 2020-03-05 | 10.1038/s41467-019-14198-8 | 1 | view | |
| Tirosh | Cell Stem Cell | Tackling the Many Facets of Glioblastoma Heterogeneity. | 2020-03-05 | 10.1016/j.stem.2020.02.005 | view | ||
| Xu | Stem Cells | Genome-Wide CRISPR Screen Identifies ZIC2 As An Essential Gene That Controls The Cell-Fate of Early Mesodermal Precursors To Human Heart Progenitors. | 2020-03-04 | 10.1002/stem.3168 | view | ||
| Chang | Cancer Epidemiol. Biomarkers Prev. | Environmental Carcinogenesis at the Single Cell Level. | 2020-03-04 | 10.1158/1055-9965.EPI-19-1364 | view | ||
| Ozaki | BMC Genomics | Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets. | 2020-03-03 | 10.1186/s12864-020-6542-z | 3 | view | |
| Qiu | Nat Commun | Embracing the dropouts in single-cell RNA-seq analysis. | 2020-03-03 | 10.1038/s41467-020-14976-9 | 7 | view | |
| Azad | Hepatology | Targeted Apoptosis Of Ductular Reactive Cells Reduces Hepatic Fibrosis In A Mouse Model of Cholestasis. | 2020-03-03 | 10.1002/hep.31211 | view | ||
| Anderson | Cell Rep | Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development. | 2020-03-03 | 10.1016/j.celrep.2020.02.030 | 1 | view | |
| Ghaedi | J. Exp. Med. | Single-cell analysis of RORα tracer mouse lung reveals ILC progenitors and effector ILC2 subsets. | 2020-03-02 | 10.1084/jem.20182293 | 4 | view | |
| Chen | J. Exp. Med. | Re-evaluation of human BDCA-2+ DC during acute sterile skin inflammation. | 2020-03-02 | 10.1084/jem.20190811 | view | ||
| Byrne | J. Exp. Med. | Dynamics of human monocytes and airway macrophages during healthy aging and after transplant. | 2020-03-02 | 10.1084/jem.20191236 | 3 | view | |
| Chen | Bioinformatics | scRMD: Imputation for single cell RNA-seq data via robust matrix decomposition. | 2020-03-02 | 10.1093/bioinformatics/btaa139 | view | ||
| Lawlor | Bioinformatics | V-SVA: an R Shiny application for detecting and annotating hidden sources of variation in single cell RNA-seq data. | 2020-03-02 | 10.1093/bioinformatics/btaa128 | view | ||
| Davies | Annu Rev Genomics Hum Genet | The Long Journey from Diagnosis to Therapy. | 2020-03-02 | 10.1146/annurev-genom-112019-083518 | view | ||
| Montoro | Cold Spring Harb Perspect Biol | A Synthesis Concerning Conservation and Divergence of Cell Types across Epithelia. | 2020-03-02 | 10.1101/cshperspect.a035733 | view | ||
| Gorick | Proc. Natl. Acad. Sci. U.S.A. | Sonoselective transfection of cerebral vasculature without blood-brain barrier disruption. | 2020-03-02 | 10.1073/pnas.1914595117 | 1 | view | |
| Schwartz | Nat. Methods | TooManyCells identifies and visualizes relationships of single-cell clades. | 2020-03-02 | 10.1038/s41592-020-0748-5 | view | ||
| Kokkaliaris | Curr Opin Oncol | Dissecting the spatial bone marrow microenvironment of hematopoietic stem cells. | 2020-03-01 | 10.1097/CCO.0000000000000605 | view | ||
| Peng | RNA Biol | Single-cell RNA-seq clustering: datasets, models, and algorithms. | 2020-03-01 | 10.1080/15476286.2020.1728961 | view | ||
| Hoa | Front Mol Neurosci | Characterizing Adult Cochlear Supporting Cell Transcriptional Diversity Using Single-Cell RNA-Seq: Validation in the Adult Mouse and Translational Implications for the Adult Human Cochlea. | 2020-03-01 | 10.3389/fnmol.2020.00013 | view | ||
| Yang | Front Genet | High-Throughput Transcriptome Profiling in Drug and Biomarker Discovery. | 2020-03-01 | 10.3389/fgene.2020.00019 | view | ||
| Lytal | Front Genet | Normalization Methods on Single-Cell RNA-seq Data: An Empirical Survey. | 2020-03-01 | 10.3389/fgene.2020.00041 | view | ||
| Xiao | Oncoimmunology | Metabolism in the tumor microenvironment: insights from single-cell analysis. | 2020-03-01 | 10.1080/2162402X.2020.1726556 | view | ||
| Obermayer | PeerJ | SCelVis: exploratory single cell data analysis on the desktop and in the cloud. | 2020-03-01 | 10.7717/peerj.8607 | view | ||
| Front Bioeng Biotechnol | Dynamic Alternative Splicing During Mouse Preimplantation Embryo Development. | 2020-03-01 | 10.3389/fbioe.2020.00035 | view | |||
| Racle | Methods Mol. Biol. | EPIC: A Tool to Estimate the Proportions of Different Cell Types from Bulk Gene Expression Data. | 2020-03-01 | 10.1007/978-1-0716-0327-7_17 | view | ||
| Fisher | Cancer Discov | Unraveling the Architecture of Classic Hodgkin Lymphoma One Cell at a Time. | 2020-03-01 | 10.1158/2159-8290.CD-19-1538 | view | ||
| Tomoiaga | NPJ Genom Med | Single-cell sperm transcriptomes and variants from fathers of children with and without autism spectrum disorder. | 2020-03-01 | 10.1038/s41525-020-0117-4 | view | ||
| Abidi | Front Immunol | Characterization of Rat ILCs Reveals ILC2 as the Dominant Intestinal Subset. | 2020-03-01 | 10.3389/fimmu.2020.00255 | view | ||
| Davis | Nat. Cell Biol. | Transcriptional diversity and bioenergetic shift in human breast cancer metastasis revealed by single-cell RNA sequencing. | 2020-03-01 | 10.1038/s41556-020-0477-0 | 10 | view | |
| Eisenstein | Nat. Biotechnol. | Single-cell RNA-seq analysis software providers scramble to offer solutions. | 2020-03-01 | 10.1038/s41587-020-0449-8 | view | ||
| Saygin | Pulm Circ | Transcriptional profiling of lung cell populations in idiopathic pulmonary arterial hypertension. | 2020-03-01 | 10.1177/2045894020908782 | view | ||
| Turki | Comput. Biol. Med. | SCGRNs: Novel supervised inference of single-cell gene regulatory networks of complex diseases. | 2020-03-01 | 10.1016/j.compbiomed.2020.103656 | view | ||
| Tieng | Front Pharmacol | Single Cell Transcriptome in Colorectal Cancer-Current Updates on Its Application in Metastasis, Chemoresistance and the Roles of Circulating Tumor Cells. | 2020-03-01 | 10.3389/fphar.2020.00135 | view | ||
| Tian | Cell Biosci | Alternative splicing signatures in preimplantation embryo development. | 2020-03-01 | 10.1186/s13578-020-00399-y | view | ||
| Mashkaryan | Front Cell Dev Biol | Type 1 Interleukin-4 Signaling Obliterates Mouse Astroglia in vivo but Not in vitro. | 2020-03-01 | 10.3389/fcell.2020.00114 | view | ||
| Attaf | Front Immunol | FB5P-seq: FACS-Based 5-Prime End Single-Cell RNA-seq for Integrative Analysis of Transcriptome and Antigen Receptor Repertoire in B and T Cells. | 2020-03-01 | 10.3389/fimmu.2020.00216 | view | ||
| Murray | Front Immunol | Myeloid Cells Enriched for a Dendritic Cell Population From People Living With HIV Have Altered Gene Expression Not Restored by Antiretroviral Therapy. | 2020-03-01 | 10.3389/fimmu.2020.00261 | view | ||
| Zhao | Theranostics | Alginate oligosaccharides improve germ cell development and testicular microenvironment to rescue busulfan disrupted spermatogenesis. | 2020-03-01 | 10.7150/thno.43189 | view | ||
| Cheng | Front Bioeng Biotechnol | Identification and Analysis of Glioblastoma Biomarkers Based on Single Cell Sequencing. | 2020-03-01 | 10.3389/fbioe.2020.00167 | view | ||
| Zhang | Front Oncol | Corrigendum: The Tumor Suppressor Role of Zinc Finger Protein 671 (ZNF671) in Multiple Tumors Based on Cancer Single-Cell Sequencing. | 2020-03-01 | 10.3389/fonc.2020.00339 | view | ||
| Gay | Sci Adv | Phagocytosis of Wnt inhibitor SFRP4 by late wound macrophages drives chronic Wnt activity for fibrotic skin healing. | 2020-03-01 | 10.1126/sciadv.aay3704 | view | ||
| Wang | Int. J. Biol. Sci. | Single-cell RNA-sequencing analysis identifies host long noncoding RNA MAMDC2-AS1 as a co-factor for HSV-1 nuclear transport. | 2020-03-01 | 10.7150/ijbs.42556 | view | ||
| Liang | Theranostics | CD8+ T-cell plasticity regulates vascular regeneration in type-2 diabetes. | 2020-03-01 | 10.7150/thno.40663 | 3 | view | |
| Badsha | Quant Biol | Imputation of single-cell gene expression with an autoencoder neural network. | 2020-03-01 | 10.1007/s40484-019-0192-7 | view | ||
| Liu | Kidney360 | Profiling APOL1 Nephropathy Risk Variants in Genome-Edited Kidney Organoids with Single-Cell Transcriptomics. | 2020-03-01 | 10.34067/kid.0000422019 | view | ||
| Thibaut | Nat Cancer | Bystander IFN-γ activity promotes widespread and sustained cytokine signaling altering the tumor microenvironment. | 2020-03-01 | 10.1038/s43018-020-0038-2 | view | ||
| Zhu | Bioinformatics | 2DImpute: Imputation in Single Cell RNA-Seq Data from Correlations in Two Dimensions. | 2020-02-28 | 10.1093/bioinformatics/btaa148 | view | ||
| Wang | Genome Med | A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles. | 2020-02-28 | 10.1186/s13073-020-0720-0 | 1 | view | |
| Lu | Mucosal Immunol | IL-17 production by tissue-resident MAIT cells is locally induced in children with pneumonia. | 2020-02-28 | 10.1038/s41385-020-0273-y | view | ||
| Deng | Chin. Med. J. | Single-cell RNA sequencing data suggest a role for angiotensin-converting enzyme 2 in kidney impairment in patients infected with 2019-nCoV. | 2020-02-28 | 10.1097/CM9.0000000000000783 | view | ||
| Wang | Bioinformatics | Ensemble learning for classifying single-cell data and projection across reference atlases. | 2020-02-27 | 10.1093/bioinformatics/btaa137 | view | ||
| Menon | JCI Insight | Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker. | 2020-02-27 | 10.1172/jci.insight.133267 | view | ||
| Zhang | PLoS Pathog. | Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)-driven pulmonary immunopathogenesis. | 2020-02-26 | 10.1371/journal.ppat.1008334 | view | ||
| Chen | Exp. Lung Res. | TGF-β1 increases sialidase 3 expression in human lung epithelial cells by decreasing its degradation and upregulating its translation. | 2020-02-26 | 10.1080/01902148.2020.1733135 | view | ||
| Wu | Nature | Peripheral T cell expansion predicts tumour infiltration and clinical response. | 2020-02-26 | 10.1038/s41586-020-2056-8 | view | ||
| Efremova | Nat Protoc | CellPhoneDB: inferring cell-cell communication from combined expression of multi-subunit ligand-receptor complexes. | 2020-02-26 | 10.1038/s41596-020-0292-x | 3 | view | |
| Liang | Cell Stem Cell | Restraining Lysosomal Activity Preserves Hematopoietic Stem Cell Quiescence and Potency. | 2020-02-26 | 10.1016/j.stem.2020.01.013 | 2 | view | |
| Cai | EBioMedicine | Single-cell transcriptomics of blood reveals a natural killer cell subset depletion in tuberculosis. | 2020-02-26 | 10.1016/j.ebiom.2020.102686 | 2 | view | |
| Zhang | Aging (Albany NY) | Advanced maternal age alters expression of maternal effect genes that are essential for human oocyte quality. | 2020-02-25 | 10.18632/aging.102864 | view | ||
| M | Genes (Basel) | Estimating the Allele-Specific Expression of SNVs From 10× Genomics Single-Cell RNA-Sequencing Data. | 2020-02-25 | 10.3390/genes11030240 | view | ||
| Gu | Environ. Sci. Technol. | Single-cell RNA sequencing reveals size-dependent effects of polystyrene microplastics on immune and secretory cell populations from zebrafish intestines. | 2020-02-24 | 10.1021/acs.est.9b06386 | view | ||
| Zhang | Genome Biol. | Linked optical and gene expression profiling of single cells at high-throughput. | 2020-02-24 | 10.1186/s13059-020-01958-9 | view | ||
| Holowiecki | Development | Pbx4 limits heart size and fosters arch artery formation through partitioning second heart field progenitors and restricting proliferation. | 2020-02-24 | 10.1242/dev.185652 | view | ||
| Tambalo | Development | A single cell transcriptome atlas of the developing zebrafish hindbrain. | 2020-02-24 | 10.1242/dev.184143 | view | ||
| Goel | Proc. Natl. Acad. Sci. U.S.A. | Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus. | 2020-02-24 | 10.1073/pnas.1916897117 | view | ||
| Ge | Proc. Natl. Acad. Sci. U.S.A. | The aging skin microenvironment dictates stem cell behavior. | 2020-02-24 | 10.1073/pnas.1901720117 | view | ||
| Hogrebe | Nat. Biotechnol. | Targeting the cytoskeleton to direct pancreatic differentiation of human pluripotent stem cells. | 2020-02-24 | 10.1038/s41587-020-0430-6 | 14 | view | |
| Tiraboschi | Epilepsia | New insights into the early mechanisms of epileptogenesis in a zebrafish model of Dravet syndrome. | 2020-02-24 | 10.1111/epi.16456 | view | ||
| Lord | Dev. Cell | Metabolic Changes Accompanying Spermatogonial Stem Cell Differentiation. | 2020-02-24 | 10.1016/j.devcel.2020.01.014 | view | ||
| Johnson | Dev. Cell | Cellular Heterogeneity and Lineage Restriction during Mouse Digit Tip Regeneration at Single-Cell Resolution. | 2020-02-24 | 10.1016/j.devcel.2020.01.026 | view | ||
| Zhu | Interdiscip Sci | Single-Cell Clustering Based on Shared Nearest Neighbor and Graph Partitioning. | 2020-02-22 | 10.1007/s12539-019-00357-4 | view | ||
| Park | Science | A cell atlas of human thymic development defines T cell repertoire formation. | 2020-02-21 | 10.1126/science.aay3224 | view | ||
| Wilkinson | Sci Rep | Persistent features of intermittent transcription. | 2020-02-21 | 10.1038/s41598-020-60094-3 | view | ||
| Joshi | J. Leukoc. Biol. | Frontline Science: Cxxc5 expression alters cell cycle and myeloid differentiation of mouse hematopoietic stem and progenitor cells. | 2020-02-21 | 10.1002/JLB.1HI0120-169R | view | ||
| Lin | BMC Bioinformatics | A deep adversarial variational autoencoder model for dimensionality reduction in single-cell RNA sequencing analysis. | 2020-02-21 | 10.1186/s12859-020-3401-5 | view | ||
| Alshetaiwi | Sci Immunol | Defining the emergence of myeloid-derived suppressor cells in breast cancer using single-cell transcriptomics. | 2020-02-21 | 10.1126/sciimmunol.aay6017 | view | ||
| Mangolini | Int J Mol Sci | Bone Marrow Stromal Cells Drive Key Hallmarks of B Cell Malignancies. | 2020-02-21 | 10.3390/ijms21041466 | view | ||
| Giacobassi | Proc. Natl. Acad. Sci. U.S.A. | An integrative approach to the facile functional classification of dorsal root ganglion neuronal subclasses. | 2020-02-20 | 10.1073/pnas.1911382117 | view | ||
| Traniello | Sci Rep | Meta-analysis of honey bee neurogenomic response links Deformed wing virus type A to precocious behavioral maturation. | 2020-02-20 | 10.1038/s41598-020-59808-4 | view | ||
| Wolf | J Cardiovasc Transl Res | Atherosclerosis: Insights into Vascular Pathobiology and Outlook to Novel Treatments. | 2020-02-19 | 10.1007/s12265-020-09961-y | view | ||
| Guo | J. Pathol. | Characteristics, dynamic changes, and prognostic significance of TCR repertoire profiling in renal cell carcinoma patients. | 2020-02-19 | 10.1002/path.5396 | view | ||
| Hakes | Elife | Tailless/TLX reverts intermediate neural progenitors to stem cells driving tumourigenesis via repression of asense/ASCL1. | 2020-02-19 | 10.7554/eLife.53377 | view | ||
| Jin | Bioinformatics | scTSSR: gene expression recovery for single-cell RNA sequencing using two-side sparse self-representation. | 2020-02-19 | 10.1093/bioinformatics/btaa108 | view | ||
| Xu | Bioinformatics | CMF-Impute: An accurate imputation tool for single cell RNA-seq data. | 2020-02-19 | 10.1093/bioinformatics/btaa109 | view | ||
| van den Brink | Nature | Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids. | 2020-02-19 | 10.1038/s41586-020-2024-3 | view | ||
| Lin | PLoS Comput. Biol. | Inferring TF activation order in time series scRNA-Seq studies. | 2020-02-18 | 10.1371/journal.pcbi.1007644 | view | ||
| Lopes | BMC Bioinformatics | Tracking intratumoral heterogeneity in glioblastoma via regularized classification of single-cell RNA-Seq data. | 2020-02-18 | 10.1186/s12859-020-3390-4 | 2 | view | |
| Samir | BMC Med Genomics | Exploring and analysing single cell multi-omics data with VDJView. | 2020-02-18 | 10.1186/s12920-020-0696-z | 1 | view | |
| Dicks | Stem Cell Res Ther | Prospective isolation of chondroprogenitors from human iPSCs based on cell surface markers identified using a CRISPR-Cas9-generated reporter. | 2020-02-18 | 10.1186/s13287-020-01597-8 | view | ||
| Iemolo | J. Comp. Neurol. | A cell type-specific expression map of NCoR1 and SMRT transcriptional co-repressors in the mouse brain. | 2020-02-18 | 10.1002/cne.24886 | view | ||
| Suenkel | Cell Rep | A Highly Conserved Circular RNA Is Required to Keep Neural Cells in a Progenitor State in the Mammalian Brain. | 2020-02-18 | 10.1016/j.celrep.2020.01.083 | view | ||
| Jorstad | Cell Rep | STAT Signaling Modifies Ascl1 Chromatin Binding and Limits Neural Regeneration from Muller Glia in Adult Mouse Retina. | 2020-02-18 | 10.1016/j.celrep.2020.01.075 | view | ||
| Pasquini | Int J Mol Sci | Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in vivo Genome Editing. | 2020-02-18 | 10.3390/ijms21041380 | 2 | view | |
| Xue | Elife | A single-parasite transcriptional atlas of Toxoplasma gondii reveals novel control of antigen expression. | 2020-02-17 | 10.7554/eLife.54129 | 1 | view | |
| Assefa | Bioinformatics | SPsimSeq: semi-parametric simulation of bulk and single cell RNA sequencing data. | 2020-02-17 | 10.1093/bioinformatics/btaa105 | view | ||
| Fendler | Nat Commun | Inhibiting WNT and NOTCH in renal cancer stem cells and the implications for human patients. | 2020-02-17 | 10.1038/s41467-020-14700-7 | view | ||
| Reyes | Nat. Med. | An immune-cell signature of bacterial sepsis. | 2020-02-17 | 10.1038/s41591-020-0752-4 | 1 | view | |
| Wen | Nat. Neurosci. | Spatiotemporal single-cell analysis of gene expression in the mouse suprachiasmatic nucleus. | 2020-02-17 | 10.1038/s41593-020-0586-x | view | ||
| Durante | Nat. Neurosci. | Single-cell analysis of olfactory neurogenesis and differentiation in adult humans. | 2020-02-17 | 10.1038/s41593-020-0587-9 | view | ||
| Marisca | Nat. Neurosci. | Functionally distinct subgroups of oligodendrocyte precursor cells integrate neural activity and execute myelin formation. | 2020-02-17 | 10.1038/s41593-019-0581-2 | 10 | view | |
| Xie | Biomolecules | Kernel Differential Subgraph Analysis to Reveal the Key Period Affecting Glioblastoma. | 2020-02-17 | 10.3390/biom10020318 | view | ||
| Tsakmaki | Mol Metab | ISX-9 manipulates endocrine progenitor fate revealing conserved intestinal lineages in mouse and human organoids. | 2020-02-17 | 10.1016/j.molmet.2020.01.012 | view | ||
| Joost | Cell Stem Cell | The Molecular Anatomy of Mouse Skin during Hair Growth and Rest. | 2020-02-15 | 10.1016/j.stem.2020.01.012 | view | ||
| Chen | Cancer Biol Med | The role of bone marrow-derived cells in the origin of liver cancer revealed by single-cell sequencing. | 2020-02-15 | 10.20892/j.issn.2095-3941.2019.0369 | view | ||
| Rondini | Biochem. J. | Single cell approaches to address adipose tissue stromal cell heterogeneity. | 2020-02-14 | 10.1042/BCJ20190467 | view | ||
| Rees | J. Leukoc. Biol. | How do immune and mesenchymal cells influence the intestinal epithelial cell compartment in inflammatory bowel disease? Let's crosstalk about it! | 2020-02-14 | 10.1002/JLB.3MIR0120-567R | view | ||
| Cao | Bioinformatics | GeneSwitches: Ordering gene-expression and functional events in single-cell experiments. | 2020-02-14 | 10.1093/bioinformatics/btaa099 | view | ||
| Sathe | Clin. Cancer Res. | Single cell genomic characterization reveals the cellular reprogramming of the gastric tumor microenvironment. | 2020-02-14 | 10.1158/1078-0432.CCR-19-3231 | 2 | view | |
| McCarthy | Cell Stem Cell | Distinct Mesenchymal Cell Populations Generate the Essential Intestinal BMP Signaling Gradient. | 2020-02-14 | 10.1016/j.stem.2020.01.008 | 3 | view | |
| Murata | Cell Stem Cell | Ascl2-Dependent Cell Dedifferentiation Drives Regeneration of Ablated Intestinal Stem Cells. | 2020-02-14 | 10.1016/j.stem.2019.12.011 | view | ||
| Boufea | iScience | scID Uses Discriminant Analysis to Identify Transcriptionally Equivalent Cell Types across Single-Cell RNA-Seq Data with Batch Effect. | 2020-02-14 | 10.1016/j.isci.2020.100914 | view | ||
| do Valle Duraes | JCI Insight | Immune cell landscaping reveals a protective role for regulatory T cells during kidney injury and fibrosis. | 2020-02-13 | 10.1172/jci.insight.130651 | view | ||
| Zhang | Bioinformatics | ZIAQ: A quantile regression method for differential expression analysis of single-cell RNA-seq data. | 2020-02-13 | 10.1093/bioinformatics/btaa098 | view | ||
| Fei | Bioinformatics | scBatch: Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment. | 2020-02-13 | 10.1093/bioinformatics/btaa097 | view | ||
| Rao | Cold Spring Harb Mol Case Stud | Comparative scRNA-seq Reveals Liver Metastasis-Specific Targets in a Patient with Small Intestinal Neuroendocrine Cancer. | 2020-02-13 | 10.1101/mcs.a004978 | view | ||
| Zhao | Cancer Lett. | Single cell RNA-seq reveals the landscape of tumor and infiltrating immune cells in nasopharyngeal cancer. | 2020-02-13 | 10.1016/j.canlet.2020.02.010 | view | ||
| Voigt | Cells | Single-Cell RNA Sequencing in Human Retinal Degeneration Reveals Distinct Glial Cell Populations. | 2020-02-13 | 10.3390/cells9020438 | view | ||
| Liang | Mol Ther Nucleic Acids | Machine Learning of Single-Cell Transcriptome Highly Identifies mRNA Signature by Comparing F-Score Selection with DGE Analysis. | 2020-02-13 | 10.1016/j.omtn.2020.02.004 | view | ||
| Tarca | BMC Med Genomics | Amniotic fluid cell-free transcriptome: a glimpse into fetal development and placental cellular dynamics during normal pregnancy. | 2020-02-12 | 10.1186/s12920-020-0690-5 | view | ||
| Holland | Genome Biol. | Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data. | 2020-02-12 | 10.1186/s13059-020-1949-z | view | ||
| Zhou | Proc. Natl. Acad. Sci. U.S.A. | Occludin protects secretory cells from ER stress by facilitating SNARE-dependent apical protein exocytosis. | 2020-02-12 | 10.1073/pnas.1909731117 | view | ||
| Dang | Mol. Psychiatry | Glial cell diversity and methamphetamine-induced neuroinflammation in human cerebral organoids. | 2020-02-12 | 10.1038/s41380-020-0676-x | view | ||
| Norimoto | Nature | A claustrum in reptiles and its role in slow-wave sleep. | 2020-02-12 | 10.1038/s41586-020-1993-6 | 2 | view | |
| Wheeler | Nature | MAFG-driven astrocytes promote CNS inflammation. | 2020-02-12 | 10.1038/s41586-020-1999-0 | 3 | view | |
| Kong | Nat Protoc | CellTagging: combinatorial indexing to simultaneously map lineage and identity at single-cell resolution. | 2020-02-12 | 10.1038/s41596-019-0247-2 | 4 | view | |
| Weinberger | Dev. Cell | Functional Heterogeneity within the Developing Zebrafish Epicardium. | 2020-02-12 | 10.1016/j.devcel.2020.01.023 | 2 | view | |
| Wang | Stem Cell Reports | Adult Human Glioblastomas Harbor Radial Glia-like Cells. | 2020-02-11 | 10.1016/j.stemcr.2020.01.007 | 2 | view | |
| Aynaud | Cell Rep | Transcriptional Programs Define Intratumoral Heterogeneity of Ewing Sarcoma at Single-Cell Resolution. | 2020-02-11 | 10.1016/j.celrep.2020.01.049 | view | ||
| LeBleu | FASEB J. | Origin and functional heterogeneity of fibroblasts. | 2020-02-10 | 10.1096/fj.201903188R | view | ||
| Walker | J Transl Med | CLEAR: coverage-based limiting-cell experiment analysis for RNA-seq. | 2020-02-10 | 10.1186/s12967-020-02247-6 | 1 | view | |
| Fu | Aging (Albany NY) | Single-cell RNA sequencing of immune cells in gastric cancer patients. | 2020-02-10 | 10.18632/aging.102774 | view | ||
| Tallquist | Annu. Rev. Physiol. | Cardiac Fibroblast Diversity. | 2020-02-10 | 10.1146/annurev-physiol-021119-034527 | 2 | view | |
| Andersson | Cancer Res. | Extensive clonal branching shapes the evolutionary history of high-risk pediatric cancers. | 2020-02-10 | 10.1158/0008-5472.CAN-19-3468 | view | ||
| Chandra | Cancer Res. | Clonal ZEB1-driven mesenchymal transition promotes targetable oncologic anti-angiogenic therapy resistance. | 2020-02-10 | 10.1158/0008-5472.CAN-19-1305 | view | ||
| Cuomo | Nat Commun | Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression. | 2020-02-10 | 10.1038/s41467-020-14457-z | view | ||
| Hanamsagar | Sci Rep | An optimized workflow for single-cell transcriptomics and repertoire profiling of purified lymphocytes from clinical samples. | 2020-02-10 | 10.1038/s41598-020-58939-y | 1 | view | |
| Fairfax | Nat. Med. | Peripheral CD8+ T cell characteristics associated with durable responses to immune checkpoint blockade in patients with metastatic melanoma. | 2020-02-10 | 10.1038/s41591-019-0734-6 | view | ||
| Hu | Cancer Cell | The Repertoire of Serous Ovarian Cancer Non-genetic Heterogeneity Revealed by Single-Cell Sequencing of Normal Fallopian Tube Epithelial Cells. | 2020-02-10 | 10.1016/j.ccell.2020.01.003 | 3 | view | |
| Kalucka | Cell | Single-Cell Transcriptome Atlas of Murine Endothelial Cells. | 2020-02-10 | 10.1016/j.cell.2020.01.015 | 7 | view | |
| Lähnemann | Genome Biol. | Eleven grand challenges in single-cell data science. | 2020-02-07 | 10.1186/s13059-020-1926-6 | 2 | view | |
| Hanchate | Proc. Natl. Acad. Sci. U.S.A. | Connect-seq to superimpose molecular on anatomical neural circuit maps. | 2020-02-07 | 10.1073/pnas.1912176117 | view | ||
| Zhang | Nat Commun | Determining sequencing depth in a single-cell RNA-seq experiment. | 2020-02-07 | 10.1038/s41467-020-14482-y | view | ||
| Schwabe | Gastroenterology | Mechanisms of Fibrosis Development in NASH. | 2020-02-07 | 10.1053/j.gastro.2019.11.311 | 1 | view | |
| Chen | Stem Cell Reports | High-Resolution Dissection of Chemical Reprogramming from Mouse Embryonic Fibroblasts into Fibrocartilaginous Cells. | 2020-02-07 | 10.1016/j.stemcr.2020.01.013 | view | ||
| Kozak | Curr. Biol. | Epithelial Planar Bipolarity Emerges from Notch-Mediated Asymmetric Inhibition of Emx2. | 2020-02-07 | 10.1016/j.cub.2020.01.027 | view | ||
| Ye | J Genet Genomics | Defining endogenous barcoding sites for CRISPR/Cas9-based cell lineage tracing in zebrafish. | 2020-02-07 | 10.1016/j.jgg.2019.11.012 | view | ||
| Posada | Mol. Biol. Evol. | CellCoal: coalescent simulation of single-cell sequencing samples. | 2020-02-06 | 10.1093/molbev/msaa025 | view | ||
| Kim | Sci Rep | Robust RNA-Seq of aRNA-amplified single cell material collected by patch clamp. | 2020-02-06 | 10.1038/s41598-020-58715-y | view | ||
| Jue | Sci Rep | Two-phase wash to solve the ubiquitous contaminant-carryover problem in commercial nucleic-acid extraction kits. | 2020-02-06 | 10.1038/s41598-020-58586-3 | view | ||
| Li | IEEE/ACM Trans Comput Biol Bioinform | Evolving Transcriptomic Profiles from Single-cell RNA-seq Data using Nature-Inspired Multiobjective Optimization. | 2020-02-06 | 10.1109/TCBB.2020.2971993 | view | ||
| He | J. Allergy Clin. Immunol. | Single-cell transcriptome analysis of human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis. | 2020-02-06 | 10.1016/j.jaci.2020.01.042 | view | ||
| Li | Neuropharmacology | The hypocretin (orexin) system: from a neural circuitry perspective. | 2020-02-06 | 10.1016/j.neuropharm.2020.107993 | view | ||
| Sui | J. Cell. Physiol. | Inhibition of HDAC6 by tubastatin A disrupts mouse oocyte meiosis via regulating histone modifications and mRNA expression. | 2020-02-04 | 10.1002/jcp.29599 | view | ||
| Janssen | Cancer Immunol Res | γδ T-cell receptors derived from breast cancer-infiltrating T lymphocytes mediate antitumor reactivity. | 2020-02-04 | 10.1158/2326-6066.CIR-19-0513 | 2 | view | |
| Masuda | Cell Rep | Microglia Heterogeneity in the Single-Cell Era. | 2020-02-04 | 10.1016/j.celrep.2020.01.010 | 11 | view | |
| Ali | Cell Rep | Cell Lineage Tracing Identifies Hormone-Regulated and Wnt-Responsive Vaginal Epithelial Stem Cells. | 2020-02-04 | 10.1016/j.celrep.2020.01.003 | view | ||
| Yartseva | Cell Rep | Heterogeneity of Satellite Cells Implicates DELTA1/NOTCH2 Signaling in Self-Renewal. | 2020-02-04 | 10.1016/j.celrep.2019.12.100 | 1 | view | |
| Sridhar | Cell Rep | Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures. | 2020-02-04 | 10.1016/j.celrep.2020.01.007 | view | ||
| Vila Ellis | Dev. Cell | Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung. | 2020-02-04 | 10.1016/j.devcel.2020.01.009 | view | ||
| Shao | iScience | scCATCH: Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data. | 2020-02-04 | 10.1016/j.isci.2020.100882 | 3 | view | |
| He | J. Exp. Med. | Atlas of the human intestine. | 2020-02-03 | 10.1084/jem.20191997 | view | ||
| Jophlin | Hepatology | The transcriptome of hepatic fibrosis revealed by single cell RNA sequencing. | 2020-02-03 | 10.1002/hep.31155 | view | ||
| Li | Curr. Biol. | Single-Cell Transcriptomes Reveal Diverse Regulatory Strategies for Olfactory Receptor Expression and Axon Targeting. | 2020-02-03 | 10.1016/j.cub.2020.01.049 | view | ||
| Siegel | Trends Parasitol. | Single cell sequencing shines a light on malaria parasite relatedness in complex infections. | 2020-02-01 | 10.1016/j.pt.2019.12.007 | 1 | view | |
| Yan | Oncol Lett | Tracking the important role of JUNB in hepatocellular carcinoma by single-cell sequencing analysis. | 2020-02-01 | 10.3892/ol.2019.11235 | view | ||
| Sidhaye | Am. J. Respir. Cell Mol. Biol. | Jumping on the Single-Cell RNA-Sequencing Bandwagon: Take Care Not to Put the Cart before the Horse. | 2020-02-01 | 10.1165/rcmb.2019-0389LE | view | ||
| Zong | PLoS ONE | Very rapid cloning, expression and identifying specificity of T-cell receptors for T-cell engineering. | 2020-02-01 | 10.1371/journal.pone.0228112 | view | ||
| Carr | Front Med (Lausanne) | New Developments in Transcriptomic Analysis of Synovial Tissue. | 2020-02-01 | 10.3389/fmed.2020.00021 | view | ||
| Ha | Heliyon | Somatic mutation landscape reveals differential variability of cell-of-origin for primary liver cancer. | 2020-02-01 | 10.1016/j.heliyon.2020.e03350 | view | ||
| Moshkovskii | Biochemistry Mosc. | Single Cell Proteogenomics - Immediate Prospects. | 2020-02-01 | 10.1134/S0006297920020029 | view | ||
| Wen | Comput Struct Biotechnol J | Technological advances and computational approaches for alternative splicing analysis in single cells. | 2020-02-01 | 10.1016/j.csbj.2020.01.009 | view | ||
| Maehara | J Korean Assoc Oral Maxillofac Surg | Review of a novel disease entity, immunoglobulin G4-related disease. | 2020-02-01 | 10.5125/jkaoms.2020.46.1.3 | view | ||
| Wen | Ann Transl Med | Single-cell transcriptomics reveals the alteration of peripheral blood mononuclear cells driven by sepsis. | 2020-02-01 | 10.21037/atm.2020.02.35 | 1 | view | |
| Deeke | J Bioinform Comput Biol | Stably expressed genes in single-cell RNA sequencing. | 2020-02-01 | 10.1142/S0219720020400041 | 1 | view | |
| Sachs | Nat Metab | Targeted pharmacological therapy restores β-cell function for diabetes remission. | 2020-02-01 | 10.1038/s42255-020-0171-3 | view | ||
| Willemsen | J. Pathol. | Macrophage subsets in atherosclerosis as defined by single-cell technologies. | 2020-01-31 | 10.1002/path.5392 | view | ||
| Zhou | Nat Commun | Surface protein imputation from single cell transcriptomes by deep neural networks. | 2020-01-31 | 10.1038/s41467-020-14391-0 | view | ||
| Mallampalli | JCI Insight | Cigarette smoke exposure enhances transforming acidic coiled-coil-containing protein 2 turnover and thereby promotes emphysema. | 2020-01-30 | 10.1172/jci.insight.125895 | view | ||
| Xiong | Hepatology | A single-cell perspective of the mammalian liver in health and disease. | 2020-01-30 | 10.1002/hep.31149 | view | ||
| Jeanpierre | Haematologica | The quiescent fraction of chronic myeloid leukemic stem cells depends on BMPR1B, Stat3 and BMP4-niche signals to persist in patients in remission. | 2020-01-30 | 10.3324/haematol.2019.232793 | view | ||
| Selewa | Sci Rep | Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation. | 2020-01-30 | 10.1038/s41598-020-58327-6 | 6 | view | |
| Yamada | Biochem. Biophys. Res. Commun. | Tissue substructure-specific deposition of the β3-containing laminin-332 in the biliary epithelium of human and mouse livers. | 2020-01-30 | 10.1016/j.bbrc.2020.01.104 | view | ||
| Alberio | Theriogenology | Untangling early embryo development using single cell genomics. | 2020-01-30 | 10.1016/j.theriogenology.2020.01.062 | view | ||
| Turgeon | J. Immunol. | Epigenetic Heterogeneity and Mitotic Heritability Prime Endothelial Cell Gene Induction. | 2020-01-29 | 10.4049/jimmunol.1900744 | view | ||
| Oatley | Nat Commun | Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition. | 2020-01-29 | 10.1038/s41467-019-14171-5 | view | ||
| Buono | Bioessays | Retina Development in Vertebrates: Systems Biology Approaches to Understanding Genetic Programs: On the Contribution of Next-Generation Sequencing Methods to the Characterization of the Regulatory Networks Controlling Vertebrate Eye Development. | 2020-01-29 | 10.1002/bies.201900187 | view | ||
| McBride | J. Pathol. | Radiation-Induced Tissue Damage and Response. | 2020-01-28 | 10.1002/path.5389 | 1 | view | |
| Kurial | Hepatology | Transcriptomic traces of adult human liver progenitor cells. | 2020-01-28 | 10.1002/hep.31143 | view | ||
| Wu | Clin J Am Soc Nephrol | Single Cell Sequencing and Kidney Organoids Generated from Pluripotent Stem Cells. | 2020-01-28 | 10.2215/CJN.07470619 | view | ||
| Elyanow | Genome Res. | netNMF-sc: leveraging gene-gene interactions for imputation and dimensionality reduction in single-cell expression analysis. | 2020-01-28 | 10.1101/gr.251603.119 | view | ||
| Wan | Genome Res. | SHARP: hyper-fast and accurate processing of single-cell RNA-seq data via ensemble random projection. | 2020-01-28 | 10.1101/gr.254557.119 | view | ||
| Wolfien | Cells | Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity. | 2020-01-28 | 10.3390/cells9020318 | view | ||
| Domingues | Elife | Loss of Kat2a enhances transcriptional noise and depletes acute myeloid leukaemia stem-like cells. | 2020-01-27 | 10.7554/eLife.51754 | view | ||
| Jackson | Elife | Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments. | 2020-01-27 | 10.7554/eLife.51254 | 3 | view | |
| Mullokandov | Proc. Natl. Acad. Sci. U.S.A. | High-complexity extracellular barcoding using a viral hemagglutinin. | 2020-01-27 | 10.1073/pnas.1919182117 | view | ||
| McGinn | Oncogene | Cytokeratin 5 alters β-catenin dynamics in breast cancer cells. | 2020-01-27 | 10.1038/s41388-020-1164-0 | view | ||
| Flores | Nat Nanotechnol | Pro-efferocytic nanoparticles are specifically taken up by lesional macrophages and prevent atherosclerosis. | 2020-01-27 | 10.1038/s41565-019-0619-3 | 6 | view | |
| Hurley | Cell Stem Cell | Reconstructed Single-Cell Fate Trajectories Define Lineage Plasticity Windows during Differentiation of Human PSC-Derived Distal Lung Progenitors. | 2020-01-27 | 10.1016/j.stem.2019.12.009 | view | ||
| Gulati | Science | Single-cell transcriptional diversity is a hallmark of developmental potential. | 2020-01-24 | 10.1126/science.aax0249 | 4 | view | |
| Yang | Genome Biol. | scMAGeCK links genotypes with multiple phenotypes in single-cell CRISPR screens. | 2020-01-24 | 10.1186/s13059-020-1928-4 | 2 | view | |
| Tam | Development | Cellular diversity and lineage trajectory: insights from mouse single cell transcriptomes. | 2020-01-24 | 10.1242/dev.179788 | view | ||
| Durante | Nat Commun | Single-cell analysis reveals new evolutionary complexity in uveal melanoma. | 2020-01-24 | 10.1038/s41467-019-14256-1 | 5 | view | |
| Wang | Sci Rep | Adaptive Landscape Shaped by Core Endogenous Network Coordinates Complex Early Progenitor Fate Commitments in Embryonic Pancreas. | 2020-01-24 | 10.1038/s41598-020-57903-0 | view | ||
| Ægidius | Sci Rep | Multi-omics characterization of a diet-induced obese model of non-alcoholic steatohepatitis. | 2020-01-24 | 10.1038/s41598-020-58059-7 | 1 | view | |
| Früh | Vet. Immunol. Immunopathol. | Elevated circulating Th2 but not group 2 innate lymphoid cell responses characterize canine atopic dermatitis. | 2020-01-24 | 10.1016/j.vetimm.2020.110015 | view | ||
| Weinreb | Science | Lineage tracing on transcriptional landscapes links state to fate during differentiation. | 2020-01-23 | 10.1126/science.aaw3381 | 56 | view | |
| Ting | Proc. Natl. Acad. Sci. U.S.A. | A molecular basis for the T cell response in HLA-DQ2.2 mediated celiac disease. | 2020-01-23 | 10.1073/pnas.1914308117 | 1 | view | |
| Post | Cell | Snake Venom Gland Organoids. | 2020-01-23 | 10.1016/j.cell.2019.11.038 | view | ||
| Shnayder | Elife | Single cell analysis reveals human cytomegalovirus drives latently infected cells towards an anergic-like monocyte state. | 2020-01-22 | 10.7554/eLife.52168 | 1 | view | |
| Liu | Genomics | Single-cell alternative splicing analysis reveals dominance of single transcript variant. | 2020-01-22 | 10.1016/j.ygeno.2020.01.014 | view | ||
| Tan | Development | Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period. | 2020-01-21 | 10.1242/dev.183251 | view | ||
| Vigneron | Proc. Natl. Acad. Sci. U.S.A. | Single-cell RNA sequencing of Trypanosoma brucei from tsetse salivary glands unveils metacyclogenesis and identifies potential transmission blocking antigens. | 2020-01-21 | 10.1073/pnas.1914423117 | view | ||
| Mashiko | Sci Rep | Chromosome segregation error during early cleavage in mouse pre-implantation embryo does not necessarily cause developmental failure after blastocyst stage. | 2020-01-21 | 10.1038/s41598-020-57817-x | view | ||
| Horns | Cell Rep | Memory B Cell Activation, Broad Anti-influenza Antibodies, and Bystander Activation Revealed by Single-Cell Transcriptomics. | 2020-01-21 | 10.1016/j.celrep.2019.12.063 | 7 | view | |
| Czermiński | Dev. Cell | Silencing Trisomy 21 with XIST in Neural Stem Cells Promotes Neuronal Differentiation. | 2020-01-21 | 10.1016/j.devcel.2019.12.015 | view | ||
| Bangru | Semin. Cell Dev. Biol. | Cellular and molecular basis of liver regeneration. | 2020-01-21 | 10.1016/j.semcdb.2019.12.004 | 2 | view | |
| Tsuyuzaki | Genome Biol. | Benchmarking principal component analysis for large-scale single-cell RNA-sequencing. | 2020-01-20 | 10.1186/s13059-019-1900-3 | 2 | view | |
| Perlman | Glia | Developmental trajectory of oligodendrocyte progenitor cells in the human brain revealed by single cell RNA sequencing. | 2020-01-20 | 10.1002/glia.23777 | view | ||
| Kim | Nat. Med. | Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report. | 2020-01-20 | 10.1038/s41591-019-0733-7 | 6 | view | |
| Pocha | Clin. Cancer Res. | Surfactant expression defines an inflamed subtype of lung adenocarcinoma brain metastases that correlates with prolonged survival. | 2020-01-17 | 10.1158/1078-0432.CCR-19-2184 | view | ||
| Yasen | Infect. Genet. Evol. | Progress and applications of single-cell sequencing techniques. | 2020-01-17 | 10.1016/j.meegid.2020.104198 | view | ||
| Jambusaria | Elife | Endothelial heterogeneity across distinct vascular beds during homeostasis and inflammation. | 2020-01-16 | 10.7554/eLife.51413 | view | ||
| Tran | Genome Biol. | A benchmark of batch-effect correction methods for single-cell RNA sequencing data. | 2020-01-16 | 10.1186/s13059-019-1850-9 | 17 | view | |
| Matsushita | Nat Commun | A Wnt-mediated transformation of the bone marrow stromal cell identity orchestrates skeletal regeneration. | 2020-01-16 | 10.1038/s41467-019-14029-w | view | ||
| Soraggi | Hum. Genet. | Evaluating genetic causes of azoospermia: What can we learn from a complex cellular structure and single-cell transcriptomics of the human testis? | 2020-01-16 | 10.1007/s00439-020-02116-8 | 3 | view | |
| Yang | Stem Cell Reports | Enhancing Hematopoiesis from Murine Embryonic Stem Cells through MLL1-Induced Activation of a Rac/Rho/Integrin Signaling Axis. | 2020-01-16 | 10.1016/j.stemcr.2019.12.009 | view | ||
| Zhu | ACS Appl Mater Interfaces | Dynamically Monitoring the Clonal Evolution of Lung Cancer Based on the Molecular Characterization of Circulating Tumor Cells using Aptamer Cocktail-Modified Nanosubstrates. | 2020-01-15 | 10.1021/acsami.9b22234 | view | ||
| Zhong | Nature | Decoding the development of the human hippocampus. | 2020-01-15 | 10.1038/s41586-019-1917-5 | view | ||
| Helmink | Nature | B cells and tertiary lymphoid structures promote immunotherapy response. | 2020-01-15 | 10.1038/s41586-019-1922-8 | view | ||
| Zhou | Genome Biol. | DENDRO: genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing. | 2020-01-14 | 10.1186/s13059-019-1922-x | view | ||
| Wang | mBio | Cell-to-Cell Variation in Defective Virus Expression and Effects on Host Responses during Influenza Virus Infection. | 2020-01-14 | 10.1128/mBio.02880-19 | view | ||
| Schafflick | Nat Commun | Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis. | 2020-01-14 | 10.1038/s41467-019-14118-w | view | ||
| Rubenstein | Sci Rep | Single-cell transcriptional profiles in human skeletal muscle. | 2020-01-14 | 10.1038/s41598-019-57110-6 | view | ||
| Svensson | Nat. Biotechnol. | Droplet scRNA-seq is not zero-inflated. | 2020-01-14 | 10.1038/s41587-019-0379-5 | view | ||
| Jost | Nat. Biotechnol. | Titrating gene expression using libraries of systematically attenuated CRISPR guide RNAs. | 2020-01-13 | 10.1038/s41587-019-0387-5 | view | ||
| Moncada | Nat. Biotechnol. | Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas. | 2020-01-13 | 10.1038/s41587-019-0392-8 | view | ||
| Ko | Nat Protoc | FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets. | 2020-01-13 | 10.1038/s41596-019-0246-3 | view | ||
| Goveia | Cancer Cell | An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial Cell Heterogeneity and Angiogenic Candidates. | 2020-01-13 | 10.1016/j.ccell.2019.12.001 | 1 | view | |
| Vorstandlechner | FASEB J. | Deciphering the functional heterogeneity of skin fibroblasts using single-cell RNA sequencing. | 2020-01-12 | 10.1096/fj.201902001RR | 1 | view | |
| Zaragosi | Biochem. Soc. Trans. | Using single-cell RNA sequencing to unravel cell lineage relationships in the respiratory tract. | 2020-01-10 | 10.1042/BST20191010 | view | ||
| Sheih | Nat Commun | Clonal kinetics and single-cell transcriptional profiling of CAR-T cells in patients undergoing CD19 CAR-T immunotherapy. | 2020-01-10 | 10.1038/s41467-019-13880-1 | view | ||
| Dong | Brief. Bioinformatics | SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing references. | 2020-01-10 | 10.1093/bib/bbz166 | view | ||
| Nakagawa | Curr. Hypertens. Rep. | The Renin-Angiotensin System in the Central Nervous System and Its Role in Blood Pressure Regulation. | 2020-01-10 | 10.1007/s11906-019-1011-2 | view | ||
| Slaidina | Genes Dev. | A single-cell atlas of the developing Drosophila ovary identifies follicle stem cell progenitors. | 2020-01-09 | 10.1101/gad.330464.119 | 2 | view | |
| Marouf | Nat Commun | Realistic in silico generation and augmentation of single-cell RNA-seq data using generative adversarial networks. | 2020-01-09 | 10.1038/s41467-019-14018-z | 9 | view | |
| Jarret | Cell | Enteric Nervous System-Derived IL-18 Orchestrates Mucosal Barrier Immunity. | 2020-01-09 | 10.1016/j.cell.2019.12.016 | 5 | view | |
| Han | ACS Appl Mater Interfaces | Photoactivated Selective Release of Droplets from Microwell Arrays. | 2020-01-08 | 10.1021/acsami.9b17575 | view | ||
| Li | Elife | Comprehensive transcriptome analysis of cochlear spiral ganglion neurons at multiple ages. | 2020-01-08 | 10.7554/eLife.50491 | view | ||
| Liu | Blood | Nivolumab treatment for relapsed/refractory Epstein-Barr virus-associated hemophagocytic lymphohistocytosis in adults. | 2020-01-08 | 10.1182/blood.2019003886 | 1 | view | |
| Chen | eNeuro | Single-cell molecular and cellular architecture of the mouse neurohypophysis. | 2020-01-08 | 10.1523/ENEURO.0345-19.2019 | view | ||
| Hung | Proc. Natl. Acad. Sci. U.S.A. | A cell atlas of the adult Drosophila midgut. | 2020-01-08 | 10.1073/pnas.1916820117 | 14 | view | |
| Gate | Nature | Clonally expanded CD8 T cells patrol the cerebrospinal fluid in Alzheimer's disease. | 2020-01-08 | 10.1038/s41586-019-1895-7 | view | ||
| Diaz-Cuadros | Nature | In vitro characterization of the human segmentation clock. | 2020-01-08 | 10.1038/s41586-019-1885-9 | view | ||
| Kupke | Viruses | Single-Cell Analysis Uncovers a Vast Diversity in Intracellular Viral Defective Interfering RNA Content Affecting the Large Cell-to-Cell Heterogeneity in Influenza A Virus Replication. | 2020-01-07 | 10.3390/v12010071 | view | ||
| Faustino Martins | Cell Stem Cell | Self-Organizing 3D Human Trunk Neuromuscular Organoids. | 2020-01-07 | 10.1016/j.stem.2019.12.007 | view | ||
| Feng | J Vis Exp | Multiplexed Single Cell mRNA Sequencing Analysis of Mouse Embryonic Cells. | 2020-01-07 | 10.3791/60647 | view | ||
| Bhattarai | PLoS Biol. | Neuron-glia interaction through Serotonin-BDNF-NGFR axis enables regenerative neurogenesis in Alzheimer's model of adult zebrafish brain. | 2020-01-06 | 10.1371/journal.pbio.3000585 | view | ||
| Dou | Nat. Biotechnol. | Accurate detection of mosaic variants in sequencing data without matched controls. | 2020-01-06 | 10.1038/s41587-019-0368-8 | view | ||
| Yahara | Nat. Cell Biol. | Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair. | 2020-01-06 | 10.1038/s41556-019-0437-8 | 2 | view | |
| Motazedian | Nat. Cell Biol. | Multipotent RAG1+ progenitors emerge directly from haemogenic endothelium in human pluripotent stem cell-derived haematopoietic organoids. | 2020-01-06 | 10.1038/s41556-019-0445-8 | view | ||
| Pratapa | Nat. Methods | Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data. | 2020-01-06 | 10.1038/s41592-019-0690-6 | view | ||
| Lange | Development | Single cell sequencing of radial glia progeny reveals diversity of newborn neurons in the adult zebrafish brain. | 2020-01-06 | 10.1242/dev.185595 | view | ||
| Lederer | Curr. Opin. Biotechnol. | The emergence and promise of single-cell temporal-omics approaches. | 2020-01-06 | 10.1016/j.copbio.2019.12.005 | view | ||
| Rosado-Olivieri | Cell Metab. | Identification of a LIF-Responsive, Replication-Competent Subpopulation of Human β Cells. | 2020-01-06 | 10.1016/j.cmet.2019.12.009 | view | ||
| Serin Harmanci | Nat Commun | CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing data. | 2020-01-03 | 10.1038/s41467-019-13779-x | view | ||
| Zhao | Mucosal Immunol | Single-cell RNA sequencing analysis reveals alginate oligosaccharides preventing chemotherapy-induced mucositis. | 2020-01-03 | 10.1038/s41385-019-0248-z | view | ||
| Liao | Sci Data | Single-cell RNA sequencing of human kidney. | 2020-01-02 | 10.1038/s41597-019-0351-8 | 9 | view | |
| Bhaduri | Cell Stem Cell | Outer Radial Glia-like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma. | 2020-01-02 | 10.1016/j.stem.2019.11.015 | view | ||
| Delacher | Immunity | Precursors for Nonlymphoid-Tissue Treg Cells Reside in Secondary Lymphoid Organs and Are Programmed by the Transcription Factor BATF. | 2020-01-02 | 10.1016/j.immuni.2019.12.002 | 6 | view | |
| Filippo | Methods Mol. Biol. | Single-cell Digital Twins for Cancer Preclinical Investigation. | 2020-01-01 | 10.1007/978-1-0716-0159-4_15 | view | ||
| Alessio | Int J Mol Sci | A Single Cell but Many Different Transcripts: A Journey into the World of Long Non-Coding RNAs. | 2020-01-01 | 10.3390/ijms21010302 | view | ||
| Geoghegan | MethodsX | Method for RNA extraction and transcriptomic analysis of single fungal spores. | 2020-01-01 | 10.1016/j.mex.2019.12.002 | view | ||
| Redick | FASEB J. | Recovery of viable endocrine-specific cells and transcriptomes from human pancreatic islet-engrafted mice. | 2020-01-01 | 10.1096/fj.201901022RR | view | ||
| Kong | FASEB J. | Lineage specification and pluripotency revealed by transcriptome analysis from oocyte to blastocyst in pig. | 2020-01-01 | 10.1096/fj.201901818RR | view | ||
| Hollenhorst | FASEB J. | Tracheal brush cells release acetylcholine in response to bitter tastants for paracrine and autocrine signaling. | 2020-01-01 | 10.1096/fj.201901314RR | 3 | view | |
| Zhou | Adv Sci (Weinh) | Chemical Cocktail Induces Hematopoietic Reprogramming and Expands Hematopoietic Stem/Progenitor Cells. | 2020-01-01 | 10.1002/advs.201901785 | view | ||
| Luo | Methods Mol. Biol. | Simultaneous Measurement of Surface Proteins and Gene Expression from Single Cells. | 2020-01-01 | 10.1007/978-1-0716-0266-9_3 | view | ||
| Ferguson | Methods Mol. Biol. | Analysis of Transcriptional Profiling of Immune Cells at the Single-Cell Level. | 2020-01-01 | 10.1007/978-1-0716-0266-9_4 | 3 | view | |
| González-Silva | Trends Cancer | Tumor Functional Heterogeneity Unraveled by scRNA-seq Technologies. | 2020-01-01 | 10.1016/j.trecan.2019.11.010 | 4 | view | |
| Zhou | Methods Mol. Biol. | Visualization of Single Cell RNA-Seq Data Using t-SNE in R. | 2020-01-01 | 10.1007/978-1-0716-0301-7_8 | view | ||
| Zhong | Methods Mol. Biol. | Use of SuperCT for Enhanced Characterization of Single-Cell Transcriptomic Profiles. | 2020-01-01 | 10.1007/978-1-0716-0301-7_9 | view | ||
| Bonnycastle | Biol Methods Protoc | Single-cell transcriptomics from human pancreatic islets: sample preparation matters. | 2020-01-01 | 10.1093/biomethods/bpz019 | view | ||
| Plemel | Sci Adv | Microglia response following acute demyelination is heterogeneous and limits infiltrating macrophage dispersion. | 2020-01-01 | 10.1126/sciadv.aay6324 | 7 | view | |
| Bykov | Meth. Enzymol. | Preparation of single cells from tumors for single-cell RNA sequencing. | 2020-01-01 | 10.1016/bs.mie.2019.05.057 | view | ||
| Araya | Meth. Enzymol. | Characterization of the tumor immune infiltrate by multiparametric flow cytometry and unbiased high-dimensional data analysis. | 2020-01-01 | 10.1016/bs.mie.2019.11.012 | 1 | view | |
| Vijay | Nat Metab | Single-cell analysis of human adipose tissue identifies depot and disease specific cell types. | 2020-01-01 | 10.1038/s42255-019-0152-6 | 1 | view | |
| Ubags | ERJ Open Res | ERS International Congress, Madrid, 2019: highlights from the Basic and Translational Science Assembly. | 2020-01-01 | 10.1183/23120541.00350-2019 | view | ||
| Zhu | Curr. Genomics | Novel Approaches to Profile Functional Long Noncoding RNAs Associated with Stem Cell Pluripotency. | 2020-01-01 | 10.2174/1389202921666200210142840 | view | ||
| Goldberg | Nat Metab | Ketogenesis activates metabolically protective γδ T cells in visceral adipose tissue. | 2020-01-01 | 10.1038/s42255-019-0160-6 | 6 | view | |
| Madissoon | Genome Biol. | scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation. | 2019-12-31 | 10.1186/s13059-019-1906-x | 4 | view | |
| Yang | BMC Genomics | Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco. | 2019-12-30 | 10.1186/s12864-019-6341-6 | view | ||
| Mieth | Sci Rep | Using transfer learning from prior reference knowledge to improve the clustering of single-cell RNA-Seq data. | 2019-12-30 | 10.1038/s41598-019-56911-z | view | ||
| Liu | J. Int. Med. Res. | Identification of key genes and pathways in abdominal aortic aneurysm by integrated bioinformatics analysis. | 2019-12-29 | 10.1177/0300060519894437 | view | ||
| Luo | Nephrol. Dial. Transplant. | A single-cell map for the transcriptomic signatures of peripheral blood mononuclear cells in end-stage renal disease. | 2019-12-28 | 10.1093/ndt/gfz227 | 1 | view | |
| Du | Eur. J. Paediatr. Neurol. | Differential excitatory vs inhibitory SCN expression at single cell level regulates brain sodium channel function in neurodevelopmental disorders. | 2019-12-28 | 10.1016/j.ejpn.2019.12.019 | view | ||
| Yuan | Breast Cancer Res. | S100a4 upregulation in Pik3caH1047R;Trp53R270H;MMTV-Cre-driven mammary tumors promotes metastasis. | 2019-12-27 | 10.1186/s13058-019-1238-5 | view | ||
| Brierley | Curr Opin Oncol | Single-cell sequencing in hematology. | 2019-12-27 | 10.1097/CCO.0000000000000613 | view | ||
| Wang | BMC Genomics | Exploring the changing landscape of cell-to-cell variation after CTCF knockdown via single cell RNA-seq. | 2019-12-26 | 10.1186/s12864-019-6379-5 | view | ||
| Tang | Cell Stem Cell | Arterial Sca1+ Vascular Stem Cells Generate De Novo Smooth Muscle for Artery Repair and Regeneration. | 2019-12-26 | 10.1016/j.stem.2019.11.010 | view | ||
| Hoof | J. Allergy Clin. Immunol. | Allergen-specific IgG+ memory B cells are temporally linked to IgE memory responses. | 2019-12-26 | 10.1016/j.jaci.2019.11.046 | view | ||
| Geddes | BMC Bioinformatics | Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis. | 2019-12-24 | 10.1186/s12859-019-3179-5 | view | ||
| Cao | BMC Bioinformatics | scDC: single cell differential composition analysis. | 2019-12-24 | 10.1186/s12859-019-3211-9 | view | ||
| Kim | BMC Genomics | scReClassify: post hoc cell type classification of single-cell rNA-seq data. | 2019-12-24 | 10.1186/s12864-019-6305-x | view | ||
| Yan | MBio | Single-Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates. | 2019-12-24 | 10.1128/mBio.02524-19 | view | ||
| Chen | Cell Rep | Human Primordial Germ Cells Are Specified from Lineage-Primed Progenitors. | 2019-12-24 | 10.1016/j.celrep.2019.11.083 | 2 | view | |
| Lee | Cytokine | Bulk and single cell transcriptomic data indicate that a dichotomy between inflammatory pathways in peripheral blood and arthritic joints complicates biomarker discovery. | 2019-12-24 | 10.1016/j.cyto.2019.154960 | 1 | view | |
| Honkoop | Elife | Single-cell analysis uncovers that metabolic reprogramming by ErbB2 signaling is essential for cardiomyocyte proliferation in the regenerating heart. | 2019-12-23 | 10.7554/eLife.50163 | view | ||
| Townes | Genome Biol. | Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model. | 2019-12-23 | 10.1186/s13059-019-1861-6 | 21 | view | |
| Hafemeister | Genome Biol. | Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression. | 2019-12-23 | 10.1186/s13059-019-1874-1 | 61 | view | |
| Perez-Rodriguez | Acta Neuropathol Commun | Investigation of somatic CNVs in brains of synucleinopathy cases using targeted SNCA analysis and single cell sequencing. | 2019-12-23 | 10.1186/s40478-019-0873-5 | 1 | view | |
| Sun | Ann. Rheum. Dis. | Single-cell RNA-seq analysis identifies meniscus progenitors and reveals the progression of meniscus degeneration. | 2019-12-23 | 10.1136/annrheumdis-2019-215926 | view | ||
| Haftbaradaran Esfahani | Basic Res. Cardiol. | Cell shape determines gene expression: cardiomyocyte morphotypic transcriptomes. | 2019-12-23 | 10.1007/s00395-019-0765-7 | view | ||
| Gehring | Nat. Biotechnol. | Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins. | 2019-12-23 | 10.1038/s41587-019-0372-z | 6 | view | |
| Goswami | Nat. Med. | Immune profiling of human tumors identifies CD73 as a combinatorial target in glioblastoma. | 2019-12-23 | 10.1038/s41591-019-0694-x | 7 | view | |
| Chen | Stem Cell Res Ther | Menstrual blood-derived stem cells: toward therapeutic mechanisms, novel strategies, and future perspectives in the treatment of diseases. | 2019-12-21 | 10.1186/s13287-019-1503-7 | 3 | view | |
| Kelly | Matrix Biol. | Single cell RNA-sequencing reveals cellular heterogeneity and trajectories of lineage specification during murine embryonic limb development. | 2019-12-21 | 10.1016/j.matbio.2019.12.004 | view | ||
| Zhang | BMC Bioinformatics | M3S: a comprehensive model selection for multi-modal single-cell RNA sequencing data. | 2019-12-20 | 10.1186/s12859-019-3243-1 | 1 | view | |
| Ocasio | Nat Commun | scRNA-seq in medulloblastoma shows cellular heterogeneity and lineage expansion support resistance to SHH inhibitor therapy. | 2019-12-20 | 10.1038/s41467-019-13657-6 | view | ||
| Walzer | PLoS Genet. | Latent transcriptional variations of individual Plasmodium falciparum uncovered by single-cell RNA-seq and fluorescence imaging. | 2019-12-19 | 10.1371/journal.pgen.1008506 | 2 | view | |
| Xu | Genome Biol. | Genotype-free demultiplexing of pooled single-cell RNA-seq. | 2019-12-19 | 10.1186/s13059-019-1852-7 | 6 | view | |
| Aoki | Cancer Discov | Single cell transcriptome analysis reveals disease-defining T cell subsets in the tumor microenvironment of classic Hodgkin lymphoma. | 2019-12-19 | 10.1158/2159-8290.CD-19-0680 | 3 | view | |
| Osorio | Cells | Single-Cell Expression Variability Implies Cell Function. | 2019-12-19 | 10.3390/cells9010014 | view | ||
| Liu | Theriogenology | Inhibition of lysine-specific histone demethylase 1A results in meiotic aberration during oocyte maturation in vitro in goats. | 2019-12-19 | 10.1016/j.theriogenology.2019.12.011 | view | ||
| Nguyen | Sci Transl Med | Elite control of HIV is associated with distinct functional and transcriptional signatures in lymphoid tissue CD8+ T cells. | 2019-12-18 | 10.1126/scitranslmed.aax4077 | view | ||
| Rao | Nat Rev Nephrol | Design and application of single-cell RNA sequencing to study kidney immune cells in lupus nephritis. | 2019-12-18 | 10.1038/s41581-019-0232-6 | 1 | view | |
| Jia | J. Cell. Mol. Med. | Identification of differentially expressed genes by single-cell transcriptional profiling of umbilical cord and synovial fluid mesenchymal stem cells. | 2019-12-17 | 10.1111/jcmm.14891 | view | ||
| Feng | Bioinformatics | scTIM: Seeking Cell-Type-Indicative Marker from single cell RNA-seq data by consensus optimization. | 2019-12-17 | 10.1093/bioinformatics/btz936 | view | ||
| Gerrits | Glia | Transcriptional profiling of microglia; current state of the art and future perspectives. | 2019-12-17 | 10.1002/glia.23767 | view | ||
| Liang | Nat Commun | Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling. | 2019-12-17 | 10.1038/s41467-019-12917-9 | 5 | view | |
| Melcher | Acta Neuropathol. | Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance. | 2019-12-17 | 10.1007/s00401-019-02116-7 | 2 | view | |
| Fukushima | Cell Rep | Discrimination of Dormant and Active Hematopoietic Stem Cells by G0 Marker Reveals Dormancy Regulation by Cytoplasmic Calcium. | 2019-12-17 | 10.1016/j.celrep.2019.11.061 | view | ||
| Guo | Cell Rep | The Cellular Diversity and Transcription Factor Code of Drosophila Enteroendocrine Cells. | 2019-12-17 | 10.1016/j.celrep.2019.11.048 | 1 | view | |
| Bajpai | J Vis Exp | Isolation of Macrophage Subsets and Stromal Cells from Human and Mouse Myocardial Specimens. | 2019-12-17 | 10.3791/60015 | view | ||
| Diaz-Hernandez | J. Cell. Physiol. | Derivation of notochordal cells from human embryonic stem cells reveals unique regulatory networks by single cell-transcriptomics. | 2019-12-16 | 10.1002/jcp.29411 | 3 | view | |
| Torii | Plant Cell Physiol. | Time-series single-cell RNA-seq data reveal auxin fluctuation during endocycle. | 2019-12-16 | 10.1093/pcp/pcz228 | view | ||
| Heng | Proc. Natl. Acad. Sci. U.S.A. | Comprehensive analysis of a mouse model of spontaneous uveoretinitis using single-cell RNA sequencing. | 2019-12-16 | 10.1073/pnas.1915571116 | view | ||
| van Es | Proc. Natl. Acad. Sci. U.S.A. | Enteroendocrine and tuft cells support Lgr5 stem cells on Paneth cell depletion. | 2019-12-16 | 10.1073/pnas.1801888117 | view | ||
| Wünnemann | Nat. Genet. | Loss of ADAMTS19 causes progressive non-syndromic heart valve disease. | 2019-12-16 | 10.1038/s41588-019-0536-2 | 3 | view | |
| Pang | Cancers (Basel) | Discovering Rare Genes Contributing to Cancer Stemness and Invasive Potential by GBM Single-Cell Transcriptional Analysis. | 2019-12-16 | 10.3390/cancers11122025 | view | ||
| Andrianova | Int J Mol Sci | Kidney Cells Regeneration: Dedifferentiation of Tubular Epithelium, Resident Stem Cells and Possible Niches for Renal Progenitors. | 2019-12-15 | 10.3390/ijms20246326 | view | ||
| Gambardella | Development | BNC1 regulates cell heterogeneity in human pluripotent stem cell-derived epicardium. | 2019-12-13 | 10.1242/dev.174441 | view | ||
| Huang | Genome Biol. | Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference. | 2019-12-13 | 10.1186/s13059-019-1865-2 | 5 | view | |
| Halaby | Sci Immunol | GCN2 drives macrophage and MDSC function and immunosuppression in the tumor microenvironment. | 2019-12-13 | 10.1126/sciimmunol.aax8189 | 2 | view | |
| Barry | Nat Commun | Molecular determinants of nephron vascular specialization in the kidney. | 2019-12-13 | 10.1038/s41467-019-12872-5 | 1 | view | |
| Alquicira-Hernandez | Genome Biol. | scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data. | 2019-12-12 | 10.1186/s13059-019-1862-5 | view | ||
| Pique-Regi | Elife | Single cell transcriptional signatures of the human placenta in term and preterm parturition. | 2019-12-12 | 10.7554/eLife.52004 | view | ||
| Li | Clin. Cancer Res. | Investigation of antigen-specific T cell receptor clusters in human cancers. | 2019-12-12 | 10.1158/1078-0432.CCR-19-3249 | view | ||
| Stewart | Nat Rev Nephrol | Using single-cell technologies to map the human immune system - implications for nephrology. | 2019-12-12 | 10.1038/s41581-019-0227-3 | 1 | view | |
| Asp | Cell | A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart. | 2019-12-12 | 10.1016/j.cell.2019.11.025 | 5 | view | |
| Corley | Sci Rep | QuantSeq. 3' Sequencing combined with Salmon provides a fast, reliable approach for high throughput RNA expression analysis. | 2019-12-11 | 10.1038/s41598-019-55434-x | view | ||
| Taguchi | Curr. Pharm. Des. | Neurological disorder drug discovery from gene expression with tensor decomposition. | 2019-12-10 | 10.2174/1381612825666191210160906 | view | ||
| Sun | Genome Biol. | Accuracy, robustness and scalability of dimensionality reduction methods for single-cell RNA-seq analysis. | 2019-12-10 | 10.1186/s13059-019-1898-6 | view | ||
| Dumas | J. Am. Soc. Nephrol. | Single-Cell RNA Sequencing Reveals Renal Endothelium Heterogeneity and Metabolic Adaptation to Water Deprivation. | 2019-12-09 | 10.1681/ASN.2019080832 | 6 | view | |
| de Andrade | JCI Insight | Discovery of specialized NK cell populations infiltrating human melanoma metastases. | 2019-12-05 | 10.1172/jci.insight.133103 | view | ||
| Ryan | Wiley Interdiscip Rev Syst Biol Med | Functional genomic approaches to elucidate the role of enhancers during development. | 2019-12-05 | 10.1002/wsbm.1467 | view | ||
| Scott | Cell Stem Cell | Hic1 Defines Quiescent Mesenchymal Progenitor Subpopulations with Distinct Functions and Fates in Skeletal Muscle Regeneration. | 2019-12-05 | 10.1016/j.stem.2019.11.004 | view | ||
| Stanley | Neuron | Continuous and Discrete Neuron Types of the Adult Murine Striatum. | 2019-12-05 | 10.1016/j.neuron.2019.11.004 | 6 | view | |
| Sun | Nucleic Acids Res. | Allele-specific single-cell RNA sequencing reveals different architectures of intrinsic and extrinsic gene expression noises. | 2019-12-04 | 10.1093/nar/gkz1134 | 2 | view | |
| Xu | J. Leukoc. Biol. | Dissecting the human immune system with single cell RNA sequencing technology. | 2019-12-04 | 10.1002/JLB.5MR1019-179R | 1 | view | |
| Freytag | Bioinformatics | schex avoids overplotting for large single cell RNA-sequencing datasets. | 2019-12-03 | 10.1093/bioinformatics/btz907 | view | ||
| Zerti | Curr. Eye Res. | Understanding the complexity of retina and pluripotent stem cell derived retinal organoids with single cell RNA sequencing: current progress, remaining challenges and future prospective. | 2019-12-03 | 10.1080/02713683.2019.1697453 | 1 | view | |
| Fouillade | Clin. Cancer Res. | FLASH irradiation spares lung progenitor cells and limits the incidence of radio-induced senescence. | 2019-12-03 | 10.1158/1078-0432.CCR-19-1440 | 2 | view | |
| Li | Cell Rep | IL-33 Signaling Alters Regulatory T Cell Diversity in Support of Tumor Development. | 2019-12-03 | 10.1016/j.celrep.2019.10.120 | 2 | view | |
| Zhou | J Vis Exp | Isolation of Region-specific Microglia from One Adult Mouse Brain Hemisphere for Deep Single-cell RNA Sequencing. | 2019-12-03 | 10.3791/60347 | view | ||
| Kang | PLoS Comput. Biol. | CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data. | 2019-12-02 | 10.1371/journal.pcbi.1007510 | 1 | view | |
| La Manno | Nat. Biotechnol. | From single-cell RNA-seq to transcriptional regulation. | 2019-12-02 | 10.1038/s41587-019-0327-4 | view | ||
| Ngo Trong | J. Comput. Biol. | Semisupervised Generative Autoencoder for Single-Cell Data. | 2019-12-02 | 10.1089/cmb.2019.0337 | view | ||
| Tu | Nat. Immunol. | TCR sequencing paired with massively parallel 3' RNA-seq reveals clonotypic T cell signatures. | 2019-12-01 | 10.1038/s41590-019-0544-5 | view | ||
| Bakhti | Mol Metab | Establishment of a high-resolution 3D modeling system for studying pancreatic epithelial cell biology in vitro. | 2019-12-01 | 10.1016/j.molmet.2019.09.005 | 2 | view | |
| Cho | Life Sci Alliance | Refining the adipose progenitor cell landscape in healthy and obese visceral adipose tissue using single-cell gene expression profiling. | 2019-12-01 | 10.26508/lsa.201900561 | view | ||
| Deng | Aging Dis | AmpliSeq Transcriptome of Laser Captured Neurons from Alzheimer Brain: Comparison of Single Cell Versus Neuron Pools. | 2019-12-01 | 10.14336/AD.2019.0225 | view | ||
| Hu | PLoS ONE | HeLa-CCL2 cell heterogeneity studied by single-cell DNA and RNA sequencing. | 2019-12-01 | 10.1371/journal.pone.0225466 | view | ||
| Moon | Nat. Biotechnol. | Visualizing structure and transitions in high-dimensional biological data. | 2019-12-01 | 10.1038/s41587-019-0336-3 | 54 | view | |
| Hayward | Front Cell Infect Microbiol | Early Transcriptional Landscapes of Chlamydia trachomatis-Infected Epithelial Cells at Single Cell Resolution. | 2019-12-01 | 10.3389/fcimb.2019.00392 | view | ||
| Liu | Cancers (Basel) | Spatial EGFR Dynamics and Metastatic Phenotypes Modulated by Upregulated EphB2 and Src Pathways in Advanced Prostate Cancer. | 2019-12-01 | 10.3390/cancers11121910 | 1 | view | |
| Li | Onco Targets Ther | Siglecs, Novel Immunotherapy Targets, Potentially Enhance The Effectiveness of Existing Immune Checkpoint Inhibitors in Glioma Immunotherapy. | 2019-12-01 | 10.2147/OTT.S223406 | view | ||
| Espinosa-Medina | Open Biol | High-throughput dense reconstruction of cell lineages. | 2019-12-01 | 10.1098/rsob.190229 | 1 | view | |
| Etherington | Gigascience | A Galaxy-based training resource for single-cell RNA-sequencing quality control and analyses. | 2019-12-01 | 10.1093/gigascience/giz144 | view | ||
| Agarwal | Sci Adv | Semblance: An empirical similarity kernel on probability spaces. | 2019-12-01 | 10.1126/sciadv.aau9630 | 1 | view | |
| Raredon | Sci Adv | Single-cell connectomic analysis of adult mammalian lungs. | 2019-12-01 | 10.1126/sciadv.aaw3851 | 8 | view | |
| Duclos | Sci Adv | Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution. | 2019-12-01 | 10.1126/sciadv.aaw3413 | 5 | view | |
| Qi | Front Genet | Identifying Common Genes, Cell Types and Brain Regions Between Diseases of the Nervous System. | 2019-12-01 | 10.3389/fgene.2019.01202 | view | ||
| Zhang | Anim Cells Syst (Seoul) | Differential cell-type-expression of CYFIP1 and CYFIP2 in the adult mouse hippocampus. | 2019-12-01 | 10.1080/19768354.2019.1696406 | view | ||
| Yu | Adv. Exp. Med. Biol. | Identification of a Unique Subretinal Microglia Type in Retinal Degeneration Using Single Cell RNA-Seq. | 2019-12-01 | 10.1007/978-3-030-27378-1_30 | view | ||
| Kang | Ann Transl Med | The application of single-cell sequencing technology in the diagnosis and treatment of hepatocellular carcinoma. | 2019-12-01 | 10.21037/atm.2019.11.116 | view | ||
| Ismail | Quant Biol | Algorithmic approaches to clonal reconstruction in heterogeneous cell populations. | 2019-12-01 | 10.1007/s40484-019-0188-3 | view | ||
| Sivakumar | Curr Stem Cell Rep | Paradigms that define lung epithelial progenitor cell fate in development and regeneration. | 2019-12-01 | 10.1007/s40778-019-00166-x | view | ||
| Elmentaite | Curr Opin Syst Biol | Studying immune to non-immune cell cross-talk using single-cell technologies. | 2019-12-01 | 10.1016/j.coisb.2019.10.005 | view | ||
| Guthmiller | Methods Mol. Biol. | An Efficient Method to Generate Monoclonal Antibodies from Human B Cells. | 2019-12-01 | 10.1007/978-1-4939-8958-4_5 | 1 | view | |
| Todorov | Methods Mol. Biol. | Network Inference from Single-Cell Transcriptomic Data. | 2019-12-01 | 10.1007/978-1-4939-8882-2_10 | 11 | view | |
| Close | Clin. Exp. Immunol. | Expression profiling of single cells and patient cohorts identifies multiple immunosuppressive pathways and an altered NK cell phenotype in glioblastoma. | 2019-11-30 | 10.1111/cei.13403 | 3 | view | |
| Sachs | Cancer Res. | Single-cell gene expression analyses reveal distinct self-renewing and proliferating subsets in the leukemia stem cell compartment in acute myeloid leukemia. | 2019-11-29 | 10.1158/0008-5472.CAN-18-2932 | view | ||
| Subramanian | Nat Commun | Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation. | 2019-11-29 | 10.1038/s41467-019-13382-0 | 5 | view | |
| Xue | J. Dermatol. Sci. | Transcriptome landscape of myeloid cells in human skin reveals diversity, rare populations and putative DC progenitors. | 2019-11-29 | 10.1016/j.jdermsci.2019.11.012 | view | ||
| Nam | Exp. Mol. Med. | Graft immaturity and safety concerns in transplanted human kidney organoids. | 2019-11-28 | 10.1038/s12276-019-0336-x | 1 | view | |
| Huh | Nucleic Acids Res. | SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble. | 2019-11-28 | 10.1093/nar/gkz959 | view | ||
| Su | Bioinformatics | CellBench: R/Bioconductor software for comparing single-cell RNA-seq analysis methods. | 2019-11-28 | 10.1093/bioinformatics/btz889 | 4 | view | |
| Kobak | Nat Commun | The art of using t-SNE for single-cell transcriptomics. | 2019-11-28 | 10.1038/s41467-019-13056-x | view | ||
| Pan | J Hematol Oncol | Single-cell RNA sequencing reveals compartmental remodeling of tumor-infiltrating immune cells induced by anti-CD47 targeting in pancreatic cancer. | 2019-11-27 | 10.1186/s13045-019-0822-6 | view | ||
| Turco | Development | Development of the human placenta. | 2019-11-27 | 10.1242/dev.163428 | 6 | view | |
| Zander | Immunity | CD4+ T Cell Help Is Required for the Formation of a Cytolytic CD8+ T Cell Subset that Protects against Chronic Infection and Cancer. | 2019-11-27 | 10.1016/j.immuni.2019.10.009 | view | ||
| Svoboda | Proc. Natl. Acad. Sci. U.S.A. | Human iPSC-derived microglia assume a primary microglia-like state after transplantation into the neonatal mouse brain. | 2019-11-26 | 10.1073/pnas.1913541116 | 11 | view | |
| Nagata | Nat Commun | Invariant patterns of clonal succession determine specific clinical features of myelodysplastic syndromes. | 2019-11-26 | 10.1038/s41467-019-13001-y | view | ||
| Kang | Mucosal Immunol | Commensal microbiota drive the functional diversification of colon macrophages. | 2019-11-26 | 10.1038/s41385-019-0228-3 | view | ||
| Pauly | Cell Rep | Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina. | 2019-11-26 | 10.1016/j.celrep.2019.10.084 | view | ||
| Farnsworth | Dev. Biol. | A single-cell transcriptome atlas for zebrafish development. | 2019-11-26 | 10.1016/j.ydbio.2019.11.008 | view | ||
| Ku | Philos. Trans. R. Soc. Lond., B, Biol. Sci. | Using single-cell transcriptomics to understand functional states and interactions in microbial eukaryotes. | 2019-11-25 | 10.1098/rstb.2019.0098 | 1 | view | |
| Florenza | Philos. Trans. R. Soc. Lond., B, Biol. Sci. | Uncovering microbial inter-domain interactions in complex communities. | 2019-11-25 | 10.1098/rstb.2019.0087 | 2 | view | |
| Lam | J. Clin. Invest. | Increased expression of anion transporter SLC26A9 delays diabetes onset in cystic fibrosis. | 2019-11-25 | 10.1172/JCI129833 | 2 | view | |
| Vickman | Prostate | Heterogeneity of human prostate carcinoma-associated fibroblasts implicates a role for subpopulations in myeloid cell recruitment. | 2019-11-25 | 10.1002/pros.23929 | view | ||
| Amses | Bioinformatics | SCGid, a consensus approach to contig filtering and genome prediction from single cell sequencing libraries of uncultured eukaryotes. | 2019-11-25 | 10.1093/bioinformatics/btz866 | view | ||
| Hillje | Bioinformatics | Cerebro: Interactive visualization of scRNA-seq data. | 2019-11-25 | 10.1093/bioinformatics/btz877 | 3 | view | |
| Harvey | Nat. Cell Biol. | A Tppp3+Pdgfra+ tendon stem cell population contributes to regeneration and reveals a shared role for PDGF signalling in regeneration and fibrosis. | 2019-11-25 | 10.1038/s41556-019-0417-z | view | ||
| Rich-Griffin | Trends Plant Sci. | Single-Cell Transcriptomics: A High-Resolution Avenue for Plant Functional Genomics. | 2019-11-25 | 10.1016/j.tplants.2019.10.008 | 2 | view | |
| Ansaloni | BMC Bioinformatics | Exploratory analysis of transposable elements expression in the C. elegans early embryo. | 2019-11-22 | 10.1186/s12859-019-3088-7 | view | ||
| Koay | Sci Immunol | A divergent transcriptional landscape underpins the development and functional branching of MAIT cells. | 2019-11-22 | 10.1126/sciimmunol.aay6039 | view | ||
| Jang | Radiother Oncol | Tumor mutation burden, immune checkpoint crosstalk and radiosensitivity in single-cell RNA sequencing data of breast cancer. | 2019-11-22 | 10.1016/j.radonc.2019.11.003 | view | ||
| Hilton | PLoS Biol. | Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity. | 2019-11-21 | 10.1371/journal.pbio.3000528 | view | ||
| Wang | J. Exp. Med. | Single-cell transcriptome analysis reveals differential nutrient absorption functions in human intestine. | 2019-11-21 | 10.1084/jem.20191130 | 2 | view | |
| Kimmel | Genome Res. | Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging. | 2019-11-21 | 10.1101/gr.253880.119 | view | ||
| Mistry | Proc. Natl. Acad. Sci. U.S.A. | Transcriptomic, epigenetic, and functional analyses implicate neutrophil diversity in the pathogenesis of systemic lupus erythematosus. | 2019-11-21 | 10.1073/pnas.1908576116 | view | ||
| Guan | J. Hepatol. | The Phosphatidylethanolamine Biosynthesis Pathway Provides a New Target for Cancer Chemotherapy. | 2019-11-21 | 10.1016/j.jhep.2019.11.007 | 3 | view | |
| Zhang | Aging (Albany NY) | Development and validation of a metastasis-associated prognostic signature based on single-cell RNA-seq in clear cell renal cell carcinoma. | 2019-11-20 | 10.18632/aging.102434 | view | ||
| Thompson | Nature | Genetic predisposition to mosaic Y chromosome loss in blood. | 2019-11-20 | 10.1038/s41586-019-1765-3 | view | ||
| Tran | Neuron | Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes. | 2019-11-20 | 10.1016/j.neuron.2019.11.006 | view | ||
| Liu | Genome Biol. | Systematic comparative analysis of single-nucleotide variant detection methods from single-cell RNA sequencing data. | 2019-11-19 | 10.1186/s13059-019-1863-4 | view | ||
| Li | Gut | Genomic and transcriptomic profiling of carcinogenesis in patients with familial adenomatous polyposis. | 2019-11-19 | 10.1136/gutjnl-2019-319438 | view | ||
| Ellender | Nat Commun | Embryonic progenitor pools generate diversity in fine-scale excitatory cortical subnetworks. | 2019-11-19 | 10.1038/s41467-019-13206-1 | 1 | view | |
| Fowler | Wiley Interdiscip Rev Dev Biol | A critical look: Challenges in differentiating human pluripotent stem cells into desired cell types and organoids. | 2019-11-19 | 10.1002/wdev.368 | 1 | view | |
| Zhou | Immunity | Building a Human Thymus: A Pointillist View. | 2019-11-19 | 10.1016/j.immuni.2019.10.003 | view | ||
| Sharma | Cell Rep | Non-Genetic Intra-Tumor Heterogeneity Is a Major Predictor of Phenotypic Heterogeneity and Ongoing Evolutionary Dynamics in Lung Tumors. | 2019-11-19 | 10.1016/j.celrep.2019.10.045 | view | ||
| Zhang | IEEE Trans Cybern | Nature-Inspired Compressed Sensing for Transcriptomic Profiling From Random Composite Measurements. | 2019-11-19 | 10.1109/TCYB.2019.2951402 | view | ||
| N Holding | Biochim Biophys Acta Gene Regul Mech | Data generation and network reconstruction strategies for single cell transcriptomic profiles of CRISPR-mediated gene perturbations. | 2019-11-19 | 10.1016/j.bbagrm.2019.194441 | view | ||
| Singh | Cell Mol Gastroenterol Hepatol | Enteroendocrine progenitor cell enriched miR-7 regulates intestinal epithelial proliferation in an Xiap-dependent manner. | 2019-11-19 | 10.1016/j.jcmgh.2019.11.001 | view | ||
| Bolander | Stem Cells Transl Med | Single-cell characterization and metabolic profiling of in vitro cultured human skeletal progenitors with enhanced in vivo bone forming capacity. | 2019-11-18 | 10.1002/sctm.19-0151 | view | ||
| Winkler | J Neuroinflammation | Neuronal maturation reduces the type I IFN response to orthobunyavirus infection and leads to increased apoptosis of human neurons. | 2019-11-18 | 10.1186/s12974-019-1614-1 | 1 | view | |
| Chen | Genome Biol. | Assessment of computational methods for the analysis of single-cell ATAC-seq data. | 2019-11-18 | 10.1186/s13059-019-1854-5 | view | ||
| Zhao | Development | Single cell transcriptome dynamics from pluripotency to FLK1+ mesoderm. | 2019-11-18 | 10.1242/dev.182097 | view | ||
| Sankowski | Nat. Neurosci. | Mapping microglia states in the human brain through the integration of high-dimensional techniques. | 2019-11-18 | 10.1038/s41593-019-0532-y | view | ||
| Qian | Nat. Methods | Probabilistic cell typing enables fine mapping of closely related cell types in situ. | 2019-11-18 | 10.1038/s41592-019-0631-4 | 25 | view | |
| Korsunsky | Nat. Methods | Fast, sensitive and accurate integration of single-cell data with Harmony. | 2019-11-18 | 10.1038/s41592-019-0619-0 | 18 | view | |
| Kyrochristos | Cancers (Basel) | Bulk and Single-Cell Next-Generation Sequencing: Individualizing Treatment for Colorectal Cancer. | 2019-11-18 | 10.3390/cancers11111809 | view | ||
| Gille | Int J Mol Sci | Contribution of Single-Cell Transcriptomics to the Characterization of Human Spermatogonial Stem Cells: Toward an Application in Male Fertility Regenerative Medicine? | 2019-11-16 | 10.3390/ijms20225773 | view | ||
| Wang | Nat Commun | Sertoli cell-only phenotype and scRNA-seq define PRAMEF12 as a factor essential for spermatogenesis in mice. | 2019-11-15 | 10.1038/s41467-019-13193-3 | view | ||
| Choi | Nat Commun | A Bayesian mixture model for the analysis of allelic expression in single cells. | 2019-11-15 | 10.1038/s41467-019-13099-0 | view | ||
| Eggesbø | Mucosal Immunol | Single-cell TCR sequencing of gut intraepithelial γδ T cells reveals a vast and diverse repertoire in celiac disease. | 2019-11-14 | 10.1038/s41385-019-0222-9 | 3 | view | |
| Bai | Cell | Genetic Identification of Vagal Sensory Neurons That Control Feeding. | 2019-11-14 | 10.1016/j.cell.2019.10.031 | 29 | view | |
| Hollern | Cell | B Cells and T Follicular Helper Cells Mediate Response to Checkpoint Inhibitors in High Mutation Burden Mouse Models of Breast Cancer. | 2019-11-14 | 10.1016/j.cell.2019.10.028 | 3 | view | |
| Shi | PLoS Comput. Biol. | Quantifying pluripotency landscape of cell differentiation from scRNA-seq data by continuous birth-death process. | 2019-11-13 | 10.1371/journal.pcbi.1007488 | 1 | view | |
| Ruan | BMC Biol. | Single-cell reconstruction of differentiation trajectory reveals a critical role of ETS1 in human cardiac lineage commitment. | 2019-11-13 | 10.1186/s12915-019-0709-6 | 3 | view | |
| Zou | J. Pineal Res. | Melatonin promotes the development of immature oocytes from the COH cycle into healthy offspring by protecting mitochondrial function. | 2019-11-12 | 10.1111/jpi.12621 | view | ||
| Evren | Immunology | Origin and Ontogeny of Lung Macrophages: From Mice to Humans. | 2019-11-12 | 10.1111/imm.13154 | 1 | view | |
| Davis | BMC Bioinformatics | SCOPIT: sample size calculations for single-cell sequencing experiments. | 2019-11-12 | 10.1186/s12859-019-3167-9 | 6 | view | |
| Liu | BMC Immunol. | Subsets of mononuclear phagocytes are enriched in the inflamed colons of patients with IBD. | 2019-11-12 | 10.1186/s12865-019-0322-z | view | ||
| Hashimoto | Proc. Natl. Acad. Sci. U.S.A. | Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians. | 2019-11-12 | 10.1073/pnas.1907883116 | view | ||
| Dobie | Cell Rep | Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis. | 2019-11-12 | 10.1016/j.celrep.2019.10.024 | 29 | view | |
| Smith | Elife | Single-cell transcriptomic evidence for dense intracortical neuropeptide networks. | 2019-11-11 | 10.7554/eLife.47889 | 1 | view | |
| Chen | Analyst | Single-cell RNA-sequencing of migratory breast cancer cells: discovering genes associated with cancer metastasis. | 2019-11-11 | 10.1039/c9an01358j | 3 | view | |
| Co | Cereb. Cortex | Cortical Foxp2 Supports Behavioral Flexibility and Developmental Dopamine D1 Receptor Expression. | 2019-11-11 | 10.1093/cercor/bhz209 | 1 | view | |
| Voigt | Proc. Natl. Acad. Sci. U.S.A. | Single-cell transcriptomics of the human retinal pigment epithelium and choroid in health and macular degeneration. | 2019-11-11 | 10.1073/pnas.1914143116 | 3 | view | |
| Cleuren | Proc. Natl. Acad. Sci. U.S.A. | The in vivo endothelial cell translatome is highly heterogeneous across vascular beds. | 2019-11-11 | 10.1073/pnas.1912409116 | 4 | view | |
| Hummel | Mucosal Immunol | Single-cell RNA-sequencing identifies the developmental trajectory of C-Myc-dependent NK1.1- T-bet+ intraepithelial lymphocyte precursors. | 2019-11-11 | 10.1038/s41385-019-0220-y | view | ||
| Wang | Nucleic Acids Res. | CancerTracer: a curated database for intrapatient tumor heterogeneity. | 2019-11-08 | 10.1093/nar/gkz1061 | 1 | view | |
| Lourenco | Cancer Res. | Differential contributions of pre- and post- EMT tumor cells in breast cancer metastasis. | 2019-11-08 | 10.1158/0008-5472.CAN-19-1427 | view | ||
| Oota | Methods | Somatic mutations ---Evolution within the individual. | 2019-11-08 | 10.1016/j.ymeth.2019.11.002 | view | ||
| Ravichandran | Bioinformatics | SigHotSpotter: scRNA-seq-based computational tool to control cell subpopulation phenotypes for cellular rejuvenation strategies. | 2019-11-07 | 10.1093/bioinformatics/btz827 | view | ||
| Cai | Bioinformatics | scGEAToolbox: a Matlab toolbox for single-cell RNA sequencing data analysis. | 2019-11-07 | 10.1093/bioinformatics/btz830 | 1 | view | |
| Zucha | Clin. Chem. | Performance Comparison of Reverse Transcriptases for Single-Cell Studies. | 2019-11-07 | 10.1373/clinchem.2019.307835 | view | ||
| Dominguez | Cancer Discov | Single-cell RNA sequencing reveals stromal evolution into LRRC15+ myofibroblasts as a determinant of patient response to cancer immunotherapy. | 2019-11-07 | 10.1158/2159-8290.CD-19-0644 | view | ||
| Sinha | Bioinformatics | Improved dropClust R package with integrative analysis support for scRNA-seq data. | 2019-11-06 | 10.1093/bioinformatics/btz823 | view | ||
| Zhang | J. Biol. Chem. | Photic generation of 11-cis-retinal in bovine retinal pigment epithelium. | 2019-11-06 | 10.1074/jbc.RA119.011169 | view | ||
| Kurmangaliyev | Elife | Modular transcriptional programs separately define axon and dendrite connectivity. | 2019-11-05 | 10.7554/eLife.50822 | 4 | view | |
| Zhang | Analyst | Improving single-cell transcriptome sequencing efficiency with a microfluidic phase-switch device. | 2019-11-05 | 10.1039/c9an00823c | view | ||
| DePasquale | Cell Rep | DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data. | 2019-11-05 | 10.1016/j.celrep.2019.09.082 | view | ||
| Jansen | PLoS Comput. Biol. | Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps. | 2019-11-04 | 10.1371/journal.pcbi.1006555 | view | ||
| Pratama | J. Exp. Med. | Developmental and cellular age direct conversion of CD4+ T cells into RORγ+ or Helios+ colon Treg cells. | 2019-11-04 | 10.1084/jem.20190428 | view | ||
| Xu | Cancer Immunol. Immunother. | Preclinical development of T-cell receptor-engineered T-cell therapy targeting the 5T4 tumor antigen on renal cell carcinoma. | 2019-11-04 | 10.1007/s00262-019-02419-4 | 2 | view | |
| Ransick | Dev. Cell | Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney. | 2019-11-04 | 10.1016/j.devcel.2019.10.005 | view | ||
| Bourillot | Exp. Cell Res. | GP130 signaling and the control of naïve pluripotency in humans, monkeys, and pigs. | 2019-11-04 | 10.1016/j.yexcr.2019.111712 | view | ||
| He | J. Cell. Biochem. | Differential expression of α6 and β1 integrins reveals epidermal heterogeneity at single-cell resolution. | 2019-11-03 | 10.1002/jcb.29487 | view | ||
| Qi | Oral Oncol. | Single-cell sequencing and its applications in head and neck cancer. | 2019-11-02 | 10.1016/j.oraloncology.2019.104441 | view | ||
| Billing | Mol Metab | Single cell transcriptomic profiling of large intestinal enteroendocrine cells in mice - Identification of selective stimuli for insulin-like peptide-5 and glucagon-like peptide-1 co-expressing cells. | 2019-11-01 | 10.1016/j.molmet.2019.09.001 | view | ||
| Pallares | G3 (Bethesda) | TM3'seq: A Tagmentation-Mediated 3' Sequencing Approach for Improving Scalability of RNAseq Experiments. | 2019-11-01 | 10.1534/g3.119.400821 | view | ||
| Borrell | F1000Res | Recent advances in understanding neocortical development. | 2019-11-01 | 10.12688/f1000research.20332.1 | view | ||
| Ren | Adv. Immunol. | Understanding tumor-infiltrating lymphocytes by single cell RNA sequencing. | 2019-11-01 | 10.1016/bs.ai.2019.08.004 | view | ||
| Kanaya | Commun Biol | Single-cell RNA-sequencing analysis of estrogen- and endocrine-disrupting chemical-induced reorganization of mouse mammary gland. | 2019-11-01 | 10.1038/s42003-019-0618-9 | view | ||
| Wen | J. Allergy Clin. Immunol. | Cell-by-cell deciphering of T cells in allergic inflammation. | 2019-11-01 | 10.1016/j.jaci.2019.10.001 | view | ||
| Torroja | Front Genet | Digitaldlsorter: Deep-Learning on scRNA-Seq to Deconvolute Gene Expression Data. | 2019-11-01 | 10.3389/fgene.2019.00978 | view | ||
| Wilson | Hemasphere | Single-Cell Sequencing in Normal and Malignant Hematopoiesis. | 2019-11-01 | 10.1097/HS9.0000000000000034 | 7 | view | |
| Barkley | Trends Cancer | Plasticity and Clonality of Cancer Cell States. | 2019-11-01 | 10.1016/j.trecan.2019.09.002 | 2 | view | |
| Ma | Front Microbiol | Single-Cell RNA Sequencing of Plant-Associated Bacterial Communities. | 2019-11-01 | 10.3389/fmicb.2019.02452 | view | ||
| Zhang | J Cancer | The transcriptome difference between colorectal tumor and normal tissues revealed by single-cell sequencing. | 2019-11-01 | 10.7150/jca.32267 | 3 | view | |
| Hayashi | Adv. Exp. Med. Biol. | Heterogeneity of Oligodendrocytes and Their Precursor Cells. | 2019-11-01 | 10.1007/978-981-32-9636-7_5 | view | ||
| Fuchs | Front Immunol | Gene Expression-Based Identification of Antigen-Responsive CD8+ T Cells on a Single-Cell Level. | 2019-11-01 | 10.3389/fimmu.2019.02568 | view | ||
| Zhang | Front Oncol | The Tumor Suppressor Role of Zinc Finger Protein 671 (ZNF671) in Multiple Tumors Based on Cancer Single-Cell Sequencing. | 2019-11-01 | 10.3389/fonc.2019.01214 | view | ||
| Lee | Nat Metab | IDOL regulates systemic energy balance through control of neuronal VLDLR expression. | 2019-11-01 | 10.1038/s42255-019-0127-7 | view | ||
| Deaton | Adv Biosyst | Mini-Metagenomics and Nucleotide Composition Aid the Identification and Host Association of Novel Bacteriophage Sequences. | 2019-11-01 | 10.1002/adbi.201900108 | view | ||
| Zhang | Cell | Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma. | 2019-10-31 | 10.1016/j.cell.2019.10.003 | view | ||
| Niu | Science | Dissecting primate early post-implantation development using long-term in vitro embryo culture. | 2019-10-31 | 10.1126/science.aaw5754 | 10 | view | |
| Ma | Science | In vitro culture of cynomolgus monkey embryos beyond early gastrulation. | 2019-10-31 | 10.1126/science.aax7890 | view | ||
| Raghunathan | J. Mol. Cell. Cardiol. | Conversion of human cardiac progenitor cells into cardiac pacemaker-like cells. | 2019-10-31 | 10.1016/j.yjmcc.2019.09.015 | 2 | view | |
| Finno | iScience | Single-Cell RNA-seq Reveals Profound Alterations in Mechanosensitive Dorsal Root Ganglion Neurons with Vitamin E Deficiency. | 2019-10-31 | 10.1016/j.isci.2019.10.064 | view | ||
| Martini | Circulation | Single Cell Sequencing of Mouse Heart Immune Infiltrate in Pressure Overload-Driven Heart Failure Reveals Extent of Immune Activation. | 2019-10-30 | 10.1161/CIRCULATIONAHA.119.041694 | 9 | view | |
| Herting | Brain | Tumour-associated macrophage-derived interleukin-1 mediates glioblastoma-associated cerebral oedema. | 2019-10-30 | 10.1093/brain/awz331 | view | ||
| Cordes | Bioinformatics | ImSpectR - R package to quantify immune repertoire diversity in spectratype and repertoire sequencing data. | 2019-10-30 | 10.1093/bioinformatics/btz804 | 1 | view | |
| Papatheodorou | Nucleic Acids Res. | Expression Atlas update: from tissues to single cells. | 2019-10-30 | 10.1093/nar/gkz947 | 12 | view | |
| Fitzgerald | Proc. Natl. Acad. Sci. U.S.A. | Self-renewing endometrial epithelial organoids of the human uterus. | 2019-10-30 | 10.1073/pnas.1915389116 | 2 | view | |
| Mongia | J. Comput. Biol. | deepMc: Deep Matrix Completion for Imputation of Single-Cell RNA-seq Data. | 2019-10-29 | 10.1089/cmb.2019.0278 | 6 | view | |
| Vgontzas | Cephalalgia | Migraine-associated gene expression in cell types of the central and peripheral nervous system. | 2019-10-29 | 10.1177/0333102419877834 | view | ||
| Oakes | Cancer Res. | Metastatic conditioning of myeloid cells at a subcutaneous synthetic niche reflects disease progression and predicts therapeutic outcomes. | 2019-10-29 | 10.1158/0008-5472.CAN-19-1932 | view | ||
| Cai | Elife | A chemical probe of CARM1 alters epigenetic plasticity against breast cancer cell invasion. | 2019-10-28 | 10.7554/eLife.47110 | 2 | view | |
| Wang | PLoS Comput. Biol. | SCMarker: Ab initio marker selection for single cell transcriptome profiling. | 2019-10-28 | 10.1371/journal.pcbi.1007445 | view | ||
| Andreyev | Trends Biotechnol. | Integration of Flow Cytometry and Single Cell Sequencing. | 2019-10-28 | 10.1016/j.tibtech.2019.09.002 | view | ||
| Zhang | World J Stem Cells | Applications of single cell RNA sequencing to research of stem cells. | 2019-10-26 | 10.4252/wjsc.v11.i10.722 | 1 | view | |
| Milliron | Circ. Res. | Isolation of Cardiomyocytes Undergoing Mitosis with Complete Cytokinesis. | 2019-10-25 | 10.1161/CIRCRESAHA.119.314908 | 1 | view | |
| Lam | Genes Cells | Single cell study of neural stem cells derived from human iPSCs reveal distinct progenitor populations with neurogenic and gliogenic potential. | 2019-10-25 | 10.1111/gtc.12731 | view | ||
| Menon | Nat Commun | Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration. | 2019-10-25 | 10.1038/s41467-019-12780-8 | 6 | view | |
| Wyler | Nat Commun | Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program. | 2019-10-25 | 10.1038/s41467-019-12894-z | view | ||
| Ding | Nat Commun | Biological process activity transformation of single cell gene expression for cross-species alignment. | 2019-10-25 | 10.1038/s41467-019-12924-w | view | ||
| Dobie | Curr Opin Pharmacol | Unravelling fibrosis using single-cell transcriptomics. | 2019-10-25 | 10.1016/j.coph.2019.09.004 | 2 | view | |
| Ren | Elife | Single-cell transcriptomes and whole-brain projections of serotonin neurons in the mouse dorsal and median raphe nuclei. | 2019-10-24 | 10.7554/eLife.49424 | 9 | view | |
| Wang | Bioinformatics | SINC: a scale-invariant deep-neural-network classifier for bulk and single-cell RNA-seq data. | 2019-10-24 | 10.1093/bioinformatics/btz801 | view | ||
| Castillo-Lara | Bioinformatics | PlanExp: intuitive integration of complex RNA-seq datasets with planarian omics resources. | 2019-10-24 | 10.1093/bioinformatics/btz802 | view | ||
| Shi | Genome Res. | Single-pollen-cell sequencing for gamete-based phased diploid genome assembly in plants. | 2019-10-24 | 10.1101/gr.251033.119 | 3 | view | |
| Jewell | Am. J. Pathol. | Single cell RNA sequencing identifies YAP1-dependent hepatic mesothelial progenitors in fibrolamellar carcinoma. | 2019-10-24 | 10.1016/j.ajpath.2019.09.018 | view | ||
| Li | Blood | Therapy-induced mutations drive the genomic landscape of relapsed acute lymphoblastic leukemia. | 2019-10-24 | 10.1182/blood.2019002220 | 11 | view | |
| Sekiguchi | J. Dent. Res. | Single-Cell RNA-seq Identifies Cell Diversity in Embryonic Salivary Glands. | 2019-10-23 | 10.1177/0022034519883888 | view | ||
| Yang | FASEB J. | Inhibiting repressive epigenetic modification promotes telomere rejuvenation in somatic cell reprogramming. | 2019-10-23 | 10.1096/fj.201901486RR | view | ||
| Zhao | Brief. Bioinformatics | Evaluation of single-cell classifiers for single-cell RNA sequencing data sets. | 2019-10-23 | 10.1093/bib/bbz096 | 2 | view | |
| Eling | Cell Syst | Correcting the Mean-Variance Dependency for Differential Variability Testing Using Single-Cell RNA Sequencing Data. | 2019-10-23 | 10.1016/j.cels.2019.08.003 | view | ||
| Wulf | J. Biol. Chem. | Non-templated addition and template switching by MMLV-based reverse transcriptases co-occur and compete with each other. | 2019-10-22 | 10.1074/jbc.RA119.010676 | view | ||
| Kondratova | Nat Commun | A multiscale signalling network map of innate immune response in cancer reveals cell heterogeneity signatures. | 2019-10-22 | 10.1038/s41467-019-12270-x | view | ||
| Singh | Blood Adv | Generation and function of progenitor T cells from StemRegenin-1-expanded CD34+ human hematopoietic progenitor cells. | 2019-10-22 | 10.1182/bloodadvances.2018026575 | view | ||
| Mironova | Curr. Opin. Plant Biol. | A single-cell view of tissue regeneration in plants. | 2019-10-22 | 10.1016/j.pbi.2019.09.003 | 1 | view | |
| Carter | Cell Syst | Bayesian Inference of Allelic Inclusion Rates in the Human T Cell Receptor Repertoire. | 2019-10-22 | 10.1016/j.cels.2019.09.006 | view | ||
| Villani | Stem Cells Transl Med | SOX9+/PTF1A+ Cells Define the Tip Progenitor Cells of the Human Fetal Pancreas of the Second Trimester. | 2019-10-21 | 10.1002/sctm.19-0231 | view | ||
| House | Clin. Cancer Res. | Macrophage derived CXCL9 and CXCL10 are required for anti-tumor immune responses following immune checkpoint blockade. | 2019-10-21 | 10.1158/1078-0432.CCR-19-1868 | 1 | view | |
| West | Proc. Natl. Acad. Sci. U.S.A. | Dynamics of trophoblast differentiation in peri-implantation-stage human embryos. | 2019-10-21 | 10.1073/pnas.1911362116 | view | ||
| Gonzales | Proc. Natl. Acad. Sci. U.S.A. | Subregion-specific rules govern the distribution of neuronal immediate-early gene induction. | 2019-10-21 | 10.1073/pnas.1913658116 | 2 | view | |
| Gomes | Trends Immunol. | Immunology Driven by Large-Scale Single-Cell Sequencing. | 2019-10-20 | 10.1016/j.it.2019.09.004 | 18 | view | |
| Liu | Cytogenet. Genome Res. | Single-Cell Sequencing Reveals the Relationship between Phenotypes and Genotypes of Klinefelter Syndrome. | 2019-10-19 | 10.1159/000503737 | view | ||
| Mazzone | Mol. Neurobiol. | Transcriptional Profiling of Individual Airway Projecting Vagal Sensory Neurons. | 2019-10-19 | 10.1007/s12035-019-01782-8 | 4 | view | |
| Xu | J. Pathol. | Clarin-1 expression in adult mouse and human retina highlights a role of Müller glia in Usher syndrome. | 2019-10-18 | 10.1002/path.5360 | view | ||
| Arisdakessian | Genome Biol. | DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq data. | 2019-10-18 | 10.1186/s13059-019-1837-6 | 14 | view | |
| Malikic | Genome Res. | PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data. | 2019-10-18 | 10.1101/gr.234435.118 | 14 | view | |
| Alisjahbana | Biochem. Pharmacol. | Human Macrophages and Innate Lymphoid Cells: Tissue-resident Innate Immunity in Humanized Mice. | 2019-10-18 | 10.1016/j.bcp.2019.113672 | 4 | view | |
| Kalvala | J Clin Med | Phenotypic Switching of Naïve T Cells to Immune-Suppressive Treg-Like Cells by Mutant KRAS. | 2019-10-18 | 10.3390/jcm8101726 | 2 | view | |
| Genovese | J. Physiol. (Lond.) | TRPV4 and purinergic receptor signalling pathways are separately linked in airway epithelia to CFTR and TMEM16A chloride channels. | 2019-10-17 | 10.1113/JP278784 | 6 | view | |
| Oyelakin | J. Dent. Res. | Transcriptomic and Single-Cell Analysis of the Murine Parotid Gland. | 2019-10-17 | 10.1177/0022034519882355 | view | ||
| O'Flanagan | Genome Biol. | Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses. | 2019-10-17 | 10.1186/s13059-019-1830-0 | view | ||
| Szabo | Nat Commun | Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease. | 2019-10-17 | 10.1038/s41467-019-12464-3 | 4 | view | |
| Kim | Cell | Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior. | 2019-10-17 | 10.1016/j.cell.2019.09.020 | 17 | view | |
| Saurty-Seerunghen | Acta Neuropathol Commun | Capture at the single cell level of metabolic modules distinguishing aggressive and indolent glioblastoma cells. | 2019-10-16 | 10.1186/s40478-019-0819-y | 1 | view | |
| Danopoulos | Eur. Respir. J. | Transcriptional Characterisation of Human Lung Cells Identifies Novel Mesenchymal Lineage Markers. | 2019-10-16 | 10.1183/13993003.00746-2019 | 4 | view | |
| Arendt | Trends Genet. | Many Ways to Build a Polyp. | 2019-10-16 | 10.1016/j.tig.2019.09.003 | view | ||
| Wang | Adv Sci (Weinh) | The CRISPR-Cas13a Gene-Editing System Induces Collateral Cleavage of RNA in Glioma Cells. | 2019-10-16 | 10.1002/advs.201901299 | 8 | view | |
| Lobentanzer | Cell Rep | Integrative Transcriptomics Reveals Sexually Dimorphic Control of the Cholinergic/Neurokine Interface in Schizophrenia and Bipolar Disorder. | 2019-10-15 | 10.1016/j.celrep.2019.09.017 | 1 | view | |
| Xu | Immunity | Transcriptional Atlas of Intestinal Immune Cells Reveals that Neuropeptide α-CGRP Modulates Group 2 Innate Lymphoid Cell Responses. | 2019-10-15 | 10.1016/j.immuni.2019.09.004 | 1 | view | |
| Zhou | Cell Syst | Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development. | 2019-10-15 | 10.1016/j.cels.2019.09.008 | 4 | view | |
| Hsu | Br. J. Haematol. | Molecular heterogeneity unravelled by single-cell transcriptomics in patients with essential thrombocythaemia. | 2019-10-14 | 10.1111/bjh.16225 | view | ||
| Chen | Nat. Biotechnol. | High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell. | 2019-10-14 | 10.1038/s41587-019-0290-0 | 23 | view | |
| Chew | Genes (Basel) | Transcriptional Networks of Microglia in Alzheimer's Disease and Insights into Pathogenesis. | 2019-10-12 | 10.3390/genes10100798 | view | ||
| Kim | Bioinformatics | Cancer classification of single cell gene expression data by neural network. | 2019-10-11 | 10.1093/bioinformatics/btz772 | 1 | view | |
| Ordoñez-Rueda | Cytometry A | Apoptotic Cell Exclusion and Bias-Free Single-Cell Selection Are Important Quality Control Requirements for Successful Single-Cell Sequencing Applications. | 2019-10-11 | 10.1002/cyto.a.23898 | 1 | view | |
| Baran | Genome Biol. | MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions. | 2019-10-11 | 10.1186/s13059-019-1812-2 | view | ||
| Sommerfeld | Sci Immunol | Interleukin-36γ-producing macrophages drive IL-17-mediated fibrosis. | 2019-10-11 | 10.1126/sciimmunol.aax4783 | 1 | view | |
| Perciani | Sci Immunol | Lifting the veil on macrophage diversity in tissue regeneration and fibrosis. | 2019-10-11 | 10.1126/sciimmunol.aaz0749 | 1 | view | |
| Vieth | Nat Commun | A systematic evaluation of single cell RNA-seq analysis pipelines. | 2019-10-11 | 10.1038/s41467-019-12266-7 | 12 | view | |
| Miklas | Nat Commun | TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes. | 2019-10-11 | 10.1038/s41467-019-12482-1 | view | ||
| Der | Nat. Immunol. | Author Correction: Tubular cell and keratinocyte single-cell transcriptomics applied to lupus nephritis reveal type I IFN and fibrosis relevant pathways. | 2019-10-11 | 10.1038/s41590-019-0529-4 | view | ||
| Zhang | Cancer Lett. | Single-cell transcriptome analysis reveals tumor immune microenvironment heterogenicity and granulocytes enrichment in colorectal cancer liver metastases. | 2019-10-11 | 10.1016/j.canlet.2019.10.016 | view | ||
| Joshi | Eur. Respir. J. | A spatially restricted fibrotic niche in pulmonary fibrosis is sustained by M-CSF/M-CSFR signaling in monocyte-derived alveolar macrophages. | 2019-10-10 | 10.1183/13993003.00646-2019 | view | ||
| Zeng | Nat Commun | DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data. | 2019-10-10 | 10.1038/s41467-019-12547-1 | 13 | view | |
| Arvanitis | Nat. Rev. Cancer | The blood-brain barrier and blood-tumour barrier in brain tumours and metastases. | 2019-10-10 | 10.1038/s41568-019-0205-x | 11 | view | |
| Lv | PLoS Biol. | Single-cell RNA sequencing reveals regulatory mechanism for trophoblast cell-fate divergence in human peri-implantation conceptuses. | 2019-10-09 | 10.1371/journal.pbio.3000187 | 6 | view | |
| Baruzzo | Bioinformatics | SPARSim Single Cell: a count data simulator for scRNA-seq data. | 2019-10-09 | 10.1093/bioinformatics/btz752 | 1 | view | |
| Nguyen | Elife | Stereotyped transcriptomic transformation of somatosensory neurons in response to injury. | 2019-10-08 | 10.7554/eLife.49679 | view | ||
| Suryawanshi | Cardiovasc. Res. | Cell atlas of the fetal human heart and implications for autoimmune-mediated congenital heart block. | 2019-10-07 | 10.1093/cvr/cvz257 | 3 | view | |
| Bolognini | Bioinformatics | VISOR: a versatile haplotype-aware structural variant simulator for short and long read sequencing. | 2019-10-07 | 10.1093/bioinformatics/btz719 | view | ||
| Radermecker | Nat. Immunol. | Locally instructed CXCR4hi neutrophils trigger environment-driven allergic asthma through the release of neutrophil extracellular traps. | 2019-10-07 | 10.1038/s41590-019-0496-9 | view | ||
| Behura | Pharmacol. Res. | The Brain-Placental Axis: Therapeutic and Pharmacological Relevancy to Pregnancy. | 2019-10-07 | 10.1016/j.phrs.2019.104468 | view | ||
| Liao | IEEE/ACM Trans Comput Biol Bioinform | EPGA-SC : A framework for de novo assembly of single-cell sequencing reads. | 2019-10-07 | 10.1109/TCBB.2019.2945761 | view | ||
| Chen | Immunity | TCF-1-Centered Transcriptional Network Drives an Effector versus Exhausted CD8 T Cell-Fate Decision. | 2019-10-07 | 10.1016/j.immuni.2019.09.013 | view | ||
| Cerniauskas | Neuron | Chronic Stress Induces Activity, Synaptic, and Transcriptional Remodeling of the Lateral Habenula Associated with Deficits in Motivated Behaviors. | 2019-10-07 | 10.1016/j.neuron.2019.09.005 | 5 | view | |
| Penaloza | Biochem. Biophys. Res. Commun. | Single-cell RNA-seq analysis of Mesp1-induced skeletal myogenic development. | 2019-10-05 | 10.1016/j.bbrc.2019.09.140 | 1 | view | |
| Tang | Bioinformatics | bayNorm: Bayesian gene expression recovery, imputation and normalisation for single cell RNA-sequencing data. | 2019-10-04 | 10.1093/bioinformatics/btz726 | 4 | view | |
| Maruggi | Cancer Res. | Absence of HIF1A leads to glycogen accumulation and an inflammatory response that enables pancreatic tumor growth. | 2019-10-04 | 10.1158/0008-5472.CAN-18-2994 | view | ||
| Lu | Neurosci. Lett. | Electrophysiological characterization of acutely isolated spiral ganglion neurons in neonatal and mature sonic hedgehog knock-in mice. | 2019-10-04 | 10.1016/j.neulet.2019.134536 | view | ||
| Abbas | Hum. Reprod. | Tissue stiffness at the human maternal-fetal interface. | 2019-10-03 | 10.1093/humrep/dez139 | view | ||
| Travnickova | Cancer Res. | Zebrafish MITF-low melanoma subtype models reveal transcriptional subclusters and MITF-independent residual disease. | 2019-10-03 | 10.1158/0008-5472.CAN-19-0037 | 3 | view | |
| Singh | Development | CDK2 kinase activity is a regulator of male germ cell fate. | 2019-10-03 | 10.1242/dev.180273 | view | ||
| Baron | Cell | Cell Type Purification by Single-Cell Transcriptome-Trained Sorting. | 2019-10-03 | 10.1016/j.cell.2019.08.006 | 2 | view | |
| Walker | Dev. Biol. | Alveolar progenitor cells in the mammary gland are dependent on the β4 integrin. | 2019-10-03 | 10.1016/j.ydbio.2019.10.001 | 1 | view | |
| Mu | Genomics Proteomics Bioinformatics | Deciphering Brain Complexity Using Single-cell Sequencing. | 2019-10-03 | 10.1016/j.gpb.2018.07.007 | view | ||
| Zeng | Immunity | Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos. | 2019-10-03 | 10.1016/j.immuni.2019.09.008 | view | ||
| Li | Anal. Chem. | A Centrifugal-Driven Droplet Generation Method with Minimal Waste for Single-Cell Whole Genome Amplification. | 2019-10-01 | 10.1021/acs.analchem.9b02786 | view | ||
| Dick | Front Immunol | Using High-Dimensional Approaches to Probe Monocytes and Macrophages in Cardiovascular Disease. | 2019-10-01 | 10.3389/fimmu.2019.02146 | view | ||
| Vishvanath | J. Clin. Invest. | Contribution of adipogenesis to healthy adipose tissue expansion in obesity. | 2019-10-01 | 10.1172/JCI129191 | 32 | view | |
| Song | J. Clin. Invest. | Low- and high-thermogenic brown adipocyte subpopulations coexist in murine adipose tissue. | 2019-10-01 | 10.1172/JCI129167 | 8 | view | |
| Chen | Gigascience | IKAP-Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis. | 2019-10-01 | 10.1093/gigascience/giz121 | view | ||
| Gruber | Cancer Discov | Single-Cell RNA Sequencing Reveals a Developmental Hierarchy in Langerhans Cell Histiocytosis. | 2019-10-01 | 10.1158/2159-8290.CD-19-0820 | view | ||
| Xie | Oncogene | Proteasome inhibitor induced SIRT1 deacetylates GLI2 to enhance hedgehog signaling activity and drug resistance in multiple myeloma. | 2019-10-01 | 10.1038/s41388-019-1037-6 | 1 | view | |
| Wang | IEEE J Biomed Health Inform | Pathway-based Single-Cell RNA-Seq Classification, Clustering, and Construction of Gene-Gene Interactions Networks Using Random Forests. | 2019-10-01 | 10.1109/JBHI.2019.2944865 | view | ||
| Larsson | Nat. Struct. Mol. Biol. | X-chromosome upregulation is driven by increased burst frequency. | 2019-10-01 | 10.1038/s41594-019-0306-y | view | ||
| Taguchi | Front Genet | Tensor Decomposition-Based Unsupervised Feature Extraction Applied to Single-Cell Gene Expression Analysis. | 2019-10-01 | 10.3389/fgene.2019.00864 | 2 | view | |
| Wang | Front Genet | SCDevDB: A Database for Insights Into Single-Cell Gene Expression Profiles During Human Developmental Processes. | 2019-10-01 | 10.3389/fgene.2019.00903 | view | ||
| Coon | Front Endocrinol (Lausanne) | Single Cell Sequencing of the Pineal Gland: The Next Chapter. | 2019-10-01 | 10.3389/fendo.2019.00590 | view | ||
| Kanton | Nature | Organoid single-cell genomic atlas uncovers human-specific features of brain development. | 2019-10-01 | 10.1038/s41586-019-1654-9 | 30 | view | |
| Reichhardt | Front Immunol | Complement in Human Pre-implantation Embryos: Attack and Defense. | 2019-10-01 | 10.3389/fimmu.2019.02234 | view | ||
| Günther | Front Immunol | Mind the Map: Technology Shapes the Myeloid Cell Space. | 2019-10-01 | 10.3389/fimmu.2019.02287 | view | ||
| Mahmoudi | Nature | Heterogeneity in old fibroblasts is linked to variability in reprogramming and wound healing. | 2019-10-01 | 10.1038/s41586-019-1658-5 | view | ||
| Nazzicari | Front Genet | MTGO-SC, A Tool to Explore Gene Modules in Single-Cell RNA Sequencing Data. | 2019-10-01 | 10.3389/fgene.2019.00953 | view | ||
| Cheng | Front Genet | Microbiome Big-Data Mining and Applications Using Single-Cell Technologies and Metagenomics Approaches Toward Precision Medicine. | 2019-10-01 | 10.3389/fgene.2019.00972 | view | ||
| Delaney | Mol. Syst. Biol. | Combinatorial prediction of marker panels from single-cell transcriptomic data. | 2019-10-01 | 10.15252/msb.20199005 | view | ||
| Lombard-Banek | Meth. Enzymol. | Single-cell proteomics in complex tissues using microprobe capillary electrophoresis mass spectrometry. | 2019-10-01 | 10.1016/bs.mie.2019.07.001 | view | ||
| Chen | Fa Yi Xue Za Zhi | Advancements in Single-cell Sequencing and the Prospect of Its Forensic Application. | 2019-10-01 | 10.12116/j.issn.1004-5619.2019.05.017 | view | ||
| Zwarycz | Cell Mol Gastroenterol Hepatol | IL22 Inhibits Epithelial Stem Cell Expansion in an Ileal Organoid Model. | 2019-10-01 | 10.1016/j.jcmgh.2018.06.008 | 10 | view | |
| Cheng | Nucleic Acids Res. | Latent cellular analysis robustly reveals subtle diversity in large-scale single-cell RNA-seq data. | 2019-09-30 | 10.1093/nar/gkz826 | 1 | view | |
| Genovese | Elife | Coopted temporal patterning governs cellular hierarchy, heterogeneity and metabolism in Drosophila neuroblast tumors. | 2019-09-30 | 10.7554/eLife.50375 | view | ||
| Beltrán | J. Clin. Invest. | Early adaptive immune activation detected in monozygotic twins with prodromal multiple sclerosis. | 2019-09-30 | 10.1172/JCI128475 | 1 | view | |
| Im | J. Biol. Chem. | Mass cytometry-based single-cell analysis of human stem cell reprogramming uncovers differential regulation of specific pluripotency markers. | 2019-09-30 | 10.1074/jbc.RA119.009061 | view | ||
| Redwood | J. Allergy Clin. Immunol. | Single cell transcriptomics reveal polyclonal memory T cell responses in abacavir patch test positive skin. | 2019-09-28 | 10.1016/j.jaci.2019.09.013 | view | ||
| Geng | FEBS Lett. | Single-cell RNA sequencing reveals chemokine self-feeding of myeloma cells promotes extramedullary metastasis. | 2019-09-27 | 10.1002/1873-3468.13623 | view | ||
| Santos | Nat Commun | Urothelial organoids originating from Cd49fhigh mouse stem cells display Notch-dependent differentiation capacity. | 2019-09-27 | 10.1038/s41467-019-12307-1 | view | ||
| Bhetraratana | Arch. Biochem. Biophys. | Diesel exhaust particles dysregulate multiple immunological pathways in murine macrophages: Lessons from microarray and scRNA-seq technologies. | 2019-09-27 | 10.1016/j.abb.2019.108116 | view | ||
| Tellechea | J. Invest. Dermatol. | Topical Application Of A Mast Cell Stabilizer Improves Impaired Diabetic Wound Healing. | 2019-09-27 | 10.1016/j.jid.2019.08.449 | view | ||
| Sun | Cells | An Efficient and Flexible Method for Deconvoluting Bulk RNA-Seq Data with Single-Cell RNA-Seq Data. | 2019-09-27 | 10.3390/cells8101161 | 1 | view | |
| Stewart | Science | Spatiotemporal immune zonation of the human kidney. | 2019-09-27 | 10.1126/science.aat5031 | view | ||
| Ruiz García | Development | Novel dynamics of human mucociliary differentiation revealed by single-cell RNA sequencing of nasal epithelial cultures. | 2019-09-26 | 10.1242/dev.177428 | view | ||
| Ryu | Clin. Cancer Res. | Alterations in the transcriptional programs of myeloma cells and the microenvironment during extramedullary progression affect proliferation and immune evasion. | 2019-09-26 | 10.1158/1078-0432.CCR-19-0694 | 2 | view | |
| Xiao | Genes Dev. | Hippo pathway deletion in adult resting cardiac fibroblasts initiates a cell state transition with spontaneous and self-sustaining fibrosis. | 2019-09-26 | 10.1101/gad.329763.119 | view | ||
| DeTomaso | Nat Commun | Functional interpretation of single cell similarity maps. | 2019-09-26 | 10.1038/s41467-019-12235-0 | 9 | view | |
| Cadwell | Neuron | Development and Arealization of the Cerebral Cortex. | 2019-09-25 | 10.1016/j.neuron.2019.07.009 | 8 | view | |
| Upadhye | Circ. Res. | Diversification and CXCR4-Dependent Establishment of the Bone Marrow B-1a Cell Pool Governs Atheroprotective IgM Production Linked To Human Coronary Atherosclerosis. | 2019-09-24 | 10.1161/CIRCRESAHA.119.315786 | 2 | view | |
| Hrvatin | Elife | A scalable platform for the development of cell-type-specific viral drivers. | 2019-09-23 | 10.7554/eLife.48089 | 3 | view | |
| Ribeiro | Int J Mol Sci | Cytogenetics and Cytogenomics Evaluation in Cancer. | 2019-09-23 | 10.3390/ijms20194711 | view | ||
| Little | Proc. Natl. Acad. Sci. U.S.A. | Transcriptional control of lung alveolar type 1 cell development and maintenance by NK homeobox 2-1. | 2019-09-23 | 10.1073/pnas.1906663116 | view | ||
| Mameishvili | Proc. Natl. Acad. Sci. U.S.A. | Aldh1b1 expression defines progenitor cells in the adult pancreas and is required for Kras-induced pancreatic cancer. | 2019-09-23 | 10.1073/pnas.1901075116 | 1 | view | |
| Ye | Nat. Biotechnol. | In vivo CRISPR screening in CD8 T cells with AAV-Sleeping Beauty hybrid vectors identifies membrane targets for improving immunotherapy for glioblastoma. | 2019-09-23 | 10.1038/s41587-019-0246-4 | view | ||
| Fang | Nat Commun | Tet inactivation disrupts YY1 binding and long-range chromatin interactions during embryonic heart development. | 2019-09-20 | 10.1038/s41467-019-12325-z | view | ||
| Verhulst | Cells | Meta-Analysis of Human and Mouse Biliary Epithelial Cell Gene Profiles. | 2019-09-20 | 10.3390/cells8101117 | 2 | view | |
| Wen | Mol. Cell | Human Germline Cell Development: from the Perspective of Single-Cell Sequencing. | 2019-09-20 | 10.1016/j.molcel.2019.08.025 | 2 | view | |
| Majka | Compr Physiol | Mesenchymal Regulation of the Microvascular Niche in Chronic Lung Diseases. | 2019-09-19 | 10.1002/cphy.c180043 | view | ||
| Wang | Aging (Albany NY) | Single-cell RNA-seq reveals RAD51AP1 as a potent mediator of EGFRvIII in human glioblastomas. | 2019-09-18 | 10.18632/aging.102282 | view | ||
| Schoonen | Mol Oncol | Premature mitotic entry induced by ATR inhibition potentiates olaparib inhibition-mediated genomic instability, inflammatory signaling and cytotoxicity in BRCA2-deficient cancer cells. | 2019-09-17 | 10.1002/1878-0261.12573 | 1 | view | |
| Kanev | Proc. Natl. Acad. Sci. U.S.A. | Proliferation-competent Tcf1+ CD8 T cells in dysfunctional populations are CD4 T cell help independent. | 2019-09-17 | 10.1073/pnas.1902701116 | view | ||
| Yu | Bioinformatics | SCSsim: an integrated tool for simulating single-cell genome sequencing data. | 2019-09-17 | 10.1093/bioinformatics/btz713 | view | ||
| Tarashansky | Elife | Self-assembling manifolds in single-cell RNA sequencing data. | 2019-09-16 | 10.7554/eLife.48994 | 6 | view | |
| Sun | PLoS Genet. | Chromosome-wide co-fluctuation of stochastic gene expression in mammalian cells. | 2019-09-16 | 10.1371/journal.pgen.1008389 | view | ||
| Harold | Proc. Natl. Acad. Sci. U.S.A. | Conversion of Sox2-dependent Merkel cell carcinoma to a differentiated neuron-like phenotype by T antigen inhibition. | 2019-09-16 | 10.1073/pnas.1907154116 | 4 | view | |
| DePasquale | Nucleic Acids Res. | cellHarmony: cell-level matching and holistic comparison of single-cell transcriptomes. | 2019-09-16 | 10.1093/nar/gkz789 | 5 | view | |
| Stevenson | J. Biomol. Struct. Dyn. | Single-cell RNA-Seq: a next generation sequencing tool for a high-resolution view of the individual cell. | 2019-09-15 | 10.1080/07391102.2019.1659859 | view | ||
| Bhattacherjee | Nat Commun | Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction. | 2019-09-13 | 10.1038/s41467-019-12054-3 | view | ||
| Tsankov | Development | Loss of DNA methyltransferase activity in primed human ES cells triggers increased cell-cell variability and transcriptional repression. | 2019-09-12 | 10.1242/dev.174722 | view | ||
| Finotello | Nat. Rev. Genet. | Next-generation computational tools for interrogating cancer immunity. | 2019-09-12 | 10.1038/s41576-019-0166-7 | 15 | view | |
| Turnquist | Expert Rev Anticancer Ther | Tumour heterogeneity: does it matter? | 2019-09-11 | 10.1080/14737140.2019.1667236 | view | ||
| Chang | Cells | Single-Cell Transcriptomes Reveal Characteristic Features of Mouse Hepatocytes with Liver Cholestatic Injury. | 2019-09-11 | 10.3390/cells8091069 | view | ||
| Blauwendraat | Lancet Neurol | The genetic architecture of Parkinson's disease. | 2019-09-11 | 10.1016/S1474-4422(19)30287-X | view | ||
| Mao | Stem Cell Reports | Single-Cell RNA Sequencing of hESC-Derived 3D Retinal Organoids Reveals Novel Genes Regulating RPC Commitment in Early Human Retinogenesis. | 2019-09-11 | 10.1016/j.stemcr.2019.08.012 | view | ||
| John | Bioinformatics | Spectrum: Fast density-aware spectral clustering for single and multi-omic data. | 2019-09-10 | 10.1093/bioinformatics/btz704 | 3 | view | |
| Shulman | Nucleic Acids Res. | Cell-type-specific analysis of alternative polyadenylation using single-cell transcriptomics data. | 2019-09-10 | 10.1093/nar/gkz781 | 4 | view | |
| Bais | Bioinformatics | scds: Computational Annotation of Doublets in Single-Cell RNA Sequencing Data. | 2019-09-10 | 10.1093/bioinformatics/btz698 | view | ||
| Xie | Bioinformatics | QUBIC2: A novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data. | 2019-09-10 | 10.1093/bioinformatics/btz692 | view | ||
| Zhang | J. Clin. Invest. | Dermal adipose tissue has high plasticity and undergoes reversible dedifferentiation in mice. | 2019-09-10 | 10.1172/JCI130239 | 12 | view | |
| Abdelaal | Genome Biol. | A comparison of automatic cell identification methods for single-cell RNA sequencing data. | 2019-09-09 | 10.1186/s13059-019-1795-z | 26 | view | |
| Li | Genome Biol. | scBFA: modeling detection patterns to mitigate technical noise in large-scale single-cell genomics data. | 2019-09-09 | 10.1186/s13059-019-1806-0 | 2 | view | |
| Zeng | Cell Res. | Tracing the first hematopoietic stem cell generation in human embryo by single-cell RNA sequencing. | 2019-09-09 | 10.1038/s41422-019-0228-6 | 7 | view | |
| Zhang | Nat. Methods | Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling. | 2019-09-09 | 10.1038/s41592-019-0529-1 | 17 | view | |
| Haremaki | Nat. Biotechnol. | Self-organizing neuruloids model developmental aspects of Huntington's disease in the ectodermal compartment. | 2019-09-09 | 10.1038/s41587-019-0237-5 | view | ||
| Yap | Toxicon | Expansion of Hydra actinoporin-like toxin (HALT) gene family: Expression divergence and functional convergence evolved through gene duplication. | 2019-09-09 | 10.1016/j.toxicon.2019.09.007 | view | ||
| Hamey | Exp. Hematol. | Machine learning predicts putative haematopoietic stem cells within large single-cell transcriptomics datasets. | 2019-09-09 | 10.1016/j.exphem.2019.08.009 | view | ||
| Vafaizadeh | J Mammary Gland Biol Neoplasia | The Eleventh ENBDC Workshop: Advances in Technology Help to Unveil Mechanisms of Mammary Gland Development and Cancerogenesis. | 2019-09-07 | 10.1007/s10911-019-09436-0 | view | ||
| Michaelis | Brain Behav. Immun. | Persistent Toll-like receptor 7 stimulation induces behavioral and molecular innate immune tolerance. | 2019-09-06 | 10.1016/j.bbi.2019.09.004 | view | ||
| Zhang | Cell Syst | Valid Post-clustering Differential Analysis for Single-Cell RNA-Seq. | 2019-09-06 | 10.1016/j.cels.2019.07.012 | 5 | view | |
| Ye | Bioinformatics | scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data. | 2019-09-06 | 10.1093/bioinformatics/btz701 | 1 | view | |
| Pang | Mol Oncol | Single-cell RNA-seq reveals the invasive trajectory and molecular cascades underlying glioblastoma progression. | 2019-09-05 | 10.1002/1878-0261.12569 | 2 | view | |
| Moutaoufik | iScience | Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis. | 2019-09-04 | 10.1016/j.isci.2019.08.057 | 2 | view | |
| Bockerstett | Gut | Single-cell transcriptional analyses of spasmolytic polypeptide-expressing metaplasia arising from acute drug injury and chronic inflammation in the stomach. | 2019-09-03 | 10.1136/gutjnl-2019-318930 | 2 | view | |
| Schyns | Nat Commun | Non-classical tissue monocytes and two functionally distinct populations of interstitial macrophages populate the mouse lung. | 2019-09-03 | 10.1038/s41467-019-11843-0 | 25 | view | |
| Hong | Nat Commun | Single-cell transcriptomics reveals multi-step adaptations to endocrine therapy. | 2019-09-02 | 10.1038/s41467-019-11721-9 | view | ||
| Yang | Nat Commun | Heterogeneity of human bone marrow and blood natural killer cells defined by single-cell transcriptome. | 2019-09-02 | 10.1038/s41467-019-11947-7 | 4 | view | |
| Cool | Mol. Biol. Cell | Spatial and temporal tools for building a human cell atlas. | 2019-09-01 | 10.1091/mbc.E18-10-0667 | 1 | view | |
| Wang | Nat. Methods | Data denoising with transfer learning in single-cell transcriptomics. | 2019-09-01 | 10.1038/s41592-019-0537-1 | view | ||
| McFaline-Figueroa | Nat. Genet. | A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition. | 2019-09-01 | 10.1038/s41588-019-0489-5 | 3 | view | |
| Sharir | Nat. Cell Biol. | A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage. | 2019-09-01 | 10.1038/s41556-019-0378-2 | 4 | view | |
| Alessandrì | Gigascience | rCASC: reproducible classification analysis of single-cell sequencing data. | 2019-09-01 | 10.1093/gigascience/giz105 | view | ||
| Tao | Cancer Manag Res | Postoperative metastasis prediction based on portal vein circulating tumor cells detected by flow cytometry in periampullary or pancreatic cancer. | 2019-09-01 | 10.2147/CMAR.S210332 | 1 | view | |
| Dominguez-Gutierrez | Mol Metab | Heterogeneity of human pancreatic β-cells. | 2019-09-01 | 10.1016/j.molmet.2019.06.015 | 3 | view | |
| He | Evodevo | Cnidofest 2018: the future is bright for cnidarian research. | 2019-09-01 | 10.1186/s13227-019-0134-5 | view | ||
| Mair | Methods Mol. Biol. | High-Dimensional Immunophenotyping with Fluorescence-Based Cytometry: A Practical Guidebook. | 2019-09-01 | 10.1007/978-1-4939-9650-6_1 | view | ||
| Ziqing | Methods Mol. Biol. | Strategies and Techniques for NK Cell Phenotyping. | 2019-09-01 | 10.1007/978-1-4939-9650-6_6 | view | ||
| Lin | Gigascience | Evaluating stably expressed genes in single cells. | 2019-09-01 | 10.1093/gigascience/giz106 | 7 | view | |
| Ben-Moshe | Nat Metab | Spatial sorting enables comprehensive characterization of liver zonation. | 2019-09-01 | 10.1038/s42255-019-0109-9 | 7 | view | |
| Finnegan | Front Genet | Single-Cell Transcriptomics Reveals Spatial and Temporal Turnover of Keratinocyte Differentiation Regulators. | 2019-09-01 | 10.3389/fgene.2019.00775 | 4 | view | |
| Shafer | Front Cell Dev Biol | Cross-Species Analysis of Single-Cell Transcriptomic Data. | 2019-09-01 | 10.3389/fcell.2019.00175 | 3 | view | |
| Hajkarim | J Lipid Atheroscler | Single Cell RNA-Sequencing for the Study of Atherosclerosis. | 2019-09-01 | 10.12997/jla.2019.8.2.152 | view | ||
| Yang | F1000Res | Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads. | 2019-09-01 | 10.12688/f1000research.19426.1 | view | ||
| Hu | PLoS Comput. Biol. | PanoView: An iterative clustering method for single-cell RNA sequencing data. | 2019-08-30 | 10.1371/journal.pcbi.1007040 | view | ||
| Tan | Autophagy | Dissecting dynamic expression of autophagy-related genes during human fetal digestive tract development via single-cell RNA sequencing. | 2019-08-30 | 10.1080/15548627.2019.1656956 | view | ||
| Dion-Côté | Elife | A hotspot for new genes. | 2019-08-29 | 10.7554/eLife.50136 | view | ||
| Lv | Biol. Res. | Light-induced injury in mouse embryos revealed by single-cell RNA sequencing. | 2019-08-29 | 10.1186/s40659-019-0256-1 | 2 | view | |
| Wang | Biomater Sci | Cardiomyocyte dedifferentiation and remodeling in 3D scaffolds to generate the cellular diversity of engineering cardiac tissues. | 2019-08-28 | 10.1039/c9bm01003c | view | ||
| Laurentino | Clin Epigenetics | High-resolution analysis of germ cells from men with sex chromosomal aneuploidies reveals normal transcriptome but impaired imprinting. | 2019-08-28 | 10.1186/s13148-019-0720-3 | 3 | view | |
| Yu | J. Am. Soc. Nephrol. | Single-Cell Transcriptomic Map of the Human and Mouse Bladders. | 2019-08-28 | 10.1681/ASN.2019040335 | view | ||
| Aldinger | Am. J. Hum. Genet. | Redefining the Etiologic Landscape of Cerebellar Malformations. | 2019-08-28 | 10.1016/j.ajhg.2019.07.019 | 1 | view | |
| Yin | Mol. Cell | High-Throughput Single-Cell Sequencing with Linear Amplification. | 2019-08-28 | 10.1016/j.molcel.2019.08.002 | 5 | view | |
| Feng | BMC Genomics | Single Cell Explorer, collaboration-driven tools to leverage large-scale single cell RNA-seq data. | 2019-08-27 | 10.1186/s12864-019-6053-y | 2 | view | |
| Namchaiw | Stem Cell Res Ther | Temporal and partial inhibition of GLI1 in neural stem cells (NSCs) results in the early maturation of NSC derived oligodendrocytes in vitro. | 2019-08-27 | 10.1186/s13287-019-1374-y | 1 | view | |
| He | Gastroenterology | Interleukin 1 beta and Matrix Metallopeptidase 3 Contribute to Development of EGFR-dependent Serrated Polyps in Mouse Cecum. | 2019-08-27 | 10.1053/j.gastro.2019.08.025 | view | ||
| Schnepp | Hum. Mol. Genet. | SNV identification from single-cell RNA sequencing data. | 2019-08-27 | 10.1093/hmg/ddz207 | 3 | view | |
| Chen | Bioinformatics | Tissue-specific deconvolution of immune cell composition by integrating bulk and single-cell transcriptomes. | 2019-08-26 | 10.1093/bioinformatics/btz672 | view | ||
| Yu | Elife | Stochastic cell-cycle entry and cell-state-dependent fate outputs of injury-reactivated tectal radial glia in zebrafish. | 2019-08-23 | 10.7554/eLife.48660 | view | ||
| Zheng | IEEE Trans Biomed Eng | scRCMF: Identification of cell subpopulations and transition states from single cell transcriptomes. | 2019-08-23 | 10.1109/TBME.2019.2937228 | view | ||
| de Couto | Arterioscler. Thromb. Vasc. Biol. | Mechanism of Enhanced MerTK-Dependent Macrophage Efferocytosis by Extracellular Vesicles. | 2019-08-22 | 10.1161/ATVBAHA.119.313115 | view | ||
| Lukowski | EMBO J. | A single-cell transcriptome atlas of the adult human retina. | 2019-08-22 | 10.15252/embj.2018100811 | 33 | view | |
| Torang | BMC Bioinformatics | An elastic-net logistic regression approach to generate classifiers and gene signatures for types of immune cells and T helper cell subsets. | 2019-08-22 | 10.1186/s12859-019-2994-z | view | ||
| Li | Nat Commun | B1 oligomerization regulates PML nuclear body biogenesis and leukemogenesis. | 2019-08-22 | 10.1038/s41467-019-11746-0 | 1 | view | |
| Desanti De Oliveira | Nat Rev Nephrol | Molecular nephrology: types of acute tubular injury. | 2019-08-22 | 10.1038/s41581-019-0184-x | view | ||
| Zhang | Am. J. Physiol. Lung Cell Mol. Physiol. | GDF15 is an epithelial-derived biomarker of idiopathic pulmonary fibrosis. | 2019-08-21 | 10.1152/ajplung.00062.2019 | 6 | view | |
| Ding | Am. J. Physiol. Lung Cell Mol. Physiol. | Integrating multi-omics longitudinal data to reconstruct networks underlying lung development. | 2019-08-21 | 10.1152/ajplung.00554.2018 | view | ||
| Hemmers | J. Exp. Med. | IL-2 production by self-reactive CD4 thymocytes scales regulatory T cell generation in the thymus. | 2019-08-21 | 10.1084/jem.20190993 | view | ||
| Hodge | Nature | Conserved cell types with divergent features in human versus mouse cortex. | 2019-08-21 | 10.1038/s41586-019-1506-7 | 207 | view | |
| Zhou | Nucleic Acids Res. | Global prediction of chromatin accessibility using small-cell-number and single-cell RNA-seq. | 2019-08-20 | 10.1093/nar/gkz716 | view | ||
| Parra | Nucleic Acids Res. | Reconstructing complex lineage trees from scRNA-seq data using MERLoT. | 2019-08-20 | 10.1093/nar/gkz706 | 7 | view | |
| Legoux | Nat. Immunol. | Molecular mechanisms of lineage decisions in metabolite-specific T cells. | 2019-08-20 | 10.1038/s41590-019-0465-3 | 6 | view | |
| Lau | Gastroenterology | Activation of Hedgehog Signaling Promotes Development of Mouse and Human Enteric Neural Crest Cells, Based on single-cell Transcriptome Analyses. | 2019-08-20 | 10.1053/j.gastro.2019.08.019 | view | ||
| Adriaenssens | Cell Metab. | Glucose-Dependent Insulinotropic Polypeptide Receptor-Expressing Cells in the Hypothalamus Regulate Food Intake. | 2019-08-19 | 10.1016/j.cmet.2019.07.013 | view | ||
| Winterer | Eur. J. Neurosci. | Single-cell RNA-Seq characterization of anatomically identified OLM interneurons in different transgenic mouse lines. | 2019-08-17 | 10.1111/ejn.14549 | 1 | view | |
| Kannan | Circ. Res. | Large Particle Fluorescence-Activated Cell Sorting Enables High-Quality Single-Cell RNA Sequencing and Functional Analysis of Adult Cardiomyocytes. | 2019-08-16 | 10.1161/CIRCRESAHA.119.315493 | view | ||
| Witt | Elife | Testis single-cell RNA-seq reveals the dynamics of de novo gene transcription and germline mutational bias in Drosophila. | 2019-08-16 | 10.7554/eLife.47138 | view | ||
| Min | Proc. Natl. Acad. Sci. U.S.A. | Diverse repertoire of human adipocyte subtypes develops from transcriptionally distinct mesenchymal progenitor cells. | 2019-08-16 | 10.1073/pnas.1906512116 | 11 | view | |
| Huisman | Nat Commun | Single cell transcriptome analysis of developing arcuate nucleus neurons uncovers their key developmental regulators. | 2019-08-16 | 10.1038/s41467-019-11667-y | view | ||
| Köhler | J. Invest. Dermatol. | DNA Methylation in Epidermal Differentiation, Aging, and Cancer. | 2019-08-16 | 10.1016/j.jid.2019.05.011 | 4 | view | |
| Huang | Elife | Molecular and anatomical organization of the dorsal raphe nucleus. | 2019-08-14 | 10.7554/eLife.46464 | 9 | view | |
| Johansen | Genome Biol. | scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq data. | 2019-08-14 | 10.1186/s13059-019-1766-4 | view | ||
| Soares | Proc. Natl. Acad. Sci. U.S.A. | Single-cell RNA-seq identifies a reversible mesodermal activation in abnormally specified epithelia of p63 EEC syndrome. | 2019-08-14 | 10.1073/pnas.1908180116 | 1 | view | |
| Petti | Nat Commun | A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing. | 2019-08-14 | 10.1038/s41467-019-11591-1 | 12 | view | |
| Waickman | Nat Commun | Dissecting the heterogeneity of DENV vaccine-elicited cellular immunity using single-cell RNA sequencing and metabolic profiling. | 2019-08-14 | 10.1038/s41467-019-11634-7 | view | ||
| Egerod | Trends Neurosci. | The Molecular Diversity of Vagal Afferents Revealed. | 2019-08-14 | 10.1016/j.tins.2019.08.002 | view | ||
| Zhang | Cancer Cell | Single-Cell Transcriptomics in Medulloblastoma Reveals Tumor-Initiating Progenitors and Oncogenic Cascades during Tumorigenesis and Relapse. | 2019-08-14 | 10.1016/j.ccell.2019.07.009 | view | ||
| Suner | Stat Appl Genet Mol Biol | Clustering methods for single-cell RNA-sequencing expression data: performance evaluation with varying sample sizes and cell compositions. | 2019-08-14 | 10.1515/sagmb-2019-0004 | view | ||
| Peng | Cell Res. | Author Correction: Single-cell RNA-seq highlights intra-tumoral heterogeneity and malignant progression in pancreatic ductal adenocarcinoma. | 2019-08-13 | 10.1038/s41422-019-0212-1 | view | ||
| Cheng | Cell Rep | m6A RNA Methylation Maintains Hematopoietic Stem Cell Identity and Symmetric Commitment. | 2019-08-13 | 10.1016/j.celrep.2019.07.032 | 3 | view | |
| Mallik | Genes (Basel) | Multi-Objective Optimized Fuzzy Clustering for Detecting Cell Clusters from Single-Cell Expression Profiles. | 2019-08-13 | 10.3390/genes10080611 | 8 | view | |
| Devitt | Virology | Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions. | 2019-08-13 | 10.1016/j.virol.2019.08.007 | view | ||
| Durand | Oncotarget | ALK mutation dynamics and clonal evolution in a neuroblastoma model exhibiting two ALK mutations. | 2019-08-13 | 10.18632/oncotarget.27119 | 1 | view | |
| Wang | Genome Biol. | BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes. | 2019-08-12 | 10.1186/s13059-019-1764-6 | 11 | view | |
| Valenzi | Ann. Rheum. Dis. | Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease. | 2019-08-12 | 10.1136/annrheumdis-2018-214865 | 9 | view | |
| Bagadia | Nat. Immunol. | An Nfil3-Zeb2-Id2 pathway imposes Irf8 enhancer switching during cDC1 development. | 2019-08-12 | 10.1038/s41590-019-0449-3 | 19 | view | |
| Lin | Cancers (Basel) | Biological Significance of Tumor Heterogeneity in Esophageal Squamous Cell Carcinoma. | 2019-08-12 | 10.3390/cancers11081156 | 1 | view | |
| Wang | Bioinformatics | Using multiple measurements of tissue to estimate subject- and cell-type-specific gene expression. | 2019-08-10 | 10.1093/bioinformatics/btz619 | 7 | view | |
| Polański | Bioinformatics | BBKNN: Fast Batch Alignment of Single Cell Transcriptomes. | 2019-08-10 | 10.1093/bioinformatics/btz625 | 29 | view | |
| Deng | Bioinformatics | Alternating EM algorithm for a bilinear model in isoform quantification from RNA-seq data. | 2019-08-10 | 10.1093/bioinformatics/btz640 | view | ||
| Yekelchyk | Basic Res. Cardiol. | Mono- and multi-nucleated ventricular cardiomyocytes constitute a transcriptionally homogenous cell population. | 2019-08-09 | 10.1007/s00395-019-0744-z | 3 | view | |
| Lee | JCI Insight | High-dimensional analysis reveals a pathogenic role of inflammatory monocytes in experimental diffuse alveolar hemorrhage. | 2019-08-08 | 10.1172/jci.insight.129703 | 2 | view | |
| Ye | Bioinformatics | scHinter: Imputing dropout events for single-cell RNA-seq data with limited sample size. | 2019-08-08 | 10.1093/bioinformatics/btz627 | view | ||
| Norman | Science | Exploring genetic interaction manifolds constructed from rich single-cell phenotypes. | 2019-08-08 | 10.1126/science.aax4438 | 8 | view | |
| Xiong | Mol. Cell | Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis. | 2019-08-08 | 10.1016/j.molcel.2019.07.028 | 45 | view | |
| Han | Cell Stem Cell | Defining the Identity and Dynamics of Adult Gastric Isthmus Stem Cells. | 2019-08-08 | 10.1016/j.stem.2019.07.008 | 6 | view | |
| Culemann | Nature | Locally renewing resident synovial macrophages provide a protective barrier for the joint. | 2019-08-07 | 10.1038/s41586-019-1471-1 | 74 | view | |
| Keener | Nat. Med. | Single-cell sequencing edges into clinical trials. | 2019-08-07 | 10.1038/d41591-019-00017-6 | view | ||
| Liu | J Am Heart Assoc | Spatiotemporal Gene Coexpression and Regulation in Mouse Cardiomyocytes of Early Cardiac Morphogenesis. | 2019-08-06 | 10.1161/JAHA.119.012941 | 1 | view | |
| Bucsan | Pathog Dis | The current state of animal models and genomic approaches towards identifying and validating molecular determinants of Mycobacterium tuberculosis infection and tuberculosis disease. | 2019-08-05 | 10.1093/femspd/ftz037 | 1 | view | |
| O'Byrne | Blood | Discovery of a CD10 negative B-progenitor in human fetal life identifies unique ontogeny-related developmental programs. | 2019-08-05 | 10.1182/blood.2019001289 | view | ||
| Nishinakamura | Nat Rev Nephrol | Human kidney organoids: progress and remaining challenges. | 2019-08-05 | 10.1038/s41581-019-0176-x | 5 | view | |
| Payne | Cancers (Basel) | Circulating Tumour Cell Biomarkers in Head and Neck Cancer: Current Progress and Future Prospects. | 2019-08-05 | 10.3390/cancers11081115 | view | ||
| Zhu | Nucleic Acids Res. | Nonparametric expression analysis using inferential replicate counts. | 2019-08-02 | 10.1093/nar/gkz622 | 2 | view | |
| Wan | Nucleic Acids Res. | LTMG: a novel statistical modeling of transcriptional expression states in single-cell RNA-Seq data. | 2019-08-02 | 10.1093/nar/gkz655 | 2 | view | |
| Liu | Bioinformatics | scRNABatchQC: Multi-samples quality control for single cell RNA-seq data. | 2019-08-02 | 10.1093/bioinformatics/btz601 | 1 | view | |
| Kim | Bioinformatics | VirtualCytometry: a webserver for evaluating immune cell differentiation using single-cell RNA sequencing data. | 2019-08-02 | 10.1093/bioinformatics/btz610 | 1 | view | |
| Rashidian | Proc. Natl. Acad. Sci. U.S.A. | Immuno-PET identifies the myeloid compartment as a key contributor to the outcome of the antitumor response under PD-1 blockade. | 2019-08-02 | 10.1073/pnas.1905005116 | 3 | view | |
| Qiu | Circ. Res. | Endothelial Cell Development and Its Application to Regenerative Medicine. | 2019-08-02 | 10.1161/CIRCRESAHA.119.311405 | view | ||
| Woo | Life Sci Alliance | De novo prediction of cell-type complexity in single-cell RNA-seq and tumor microenvironments. | 2019-08-01 | 10.26508/lsa.201900443 | 1 | view | |
| Bageritz | Nat. Methods | Gene expression atlas of a developing tissue by single cell expression correlation analysis. | 2019-08-01 | 10.1038/s41592-019-0492-x | 13 | view | |
| Zhou | Cancer Cell Int. | Characteristics of a novel cell line ZJU-0430 established from human gallbladder carcinoma. | 2019-08-01 | 10.1186/s12935-019-0911-1 | view | ||
| Belle | Cancer Discov | A Single-Cell Window into Pancreas Cancer Fibroblast Heterogeneity. | 2019-08-01 | 10.1158/2159-8290.CD-19-0576 | view | ||
| Mercatelli | Front Genet | Pan-Cancer and Single-Cell Modeling of Genomic Alterations Through Gene Expression. | 2019-08-01 | 10.3389/fgene.2019.00671 | view | ||
| Tang | Cell Biosci | The single-cell sequencing: new developments and medical applications. | 2019-08-01 | 10.1186/s13578-019-0314-y | 15 | view | |
| Li | Front Endocrinol (Lausanne) | Growth Hormone Promotes in vitro Maturation of Human Oocytes. | 2019-08-01 | 10.3389/fendo.2019.00485 | view | ||
| Weinstock | Immunometabolism | Single-Cell RNA Sequencing of Visceral Adipose Tissue Leukocytes Reveals that Caloric Restriction Following Obesity Promotes the Accumulation of a Distinct Macrophage Population with Features of Phagocytic Cells. | 2019-08-01 | 10.20900/immunometab20190008 | 10 | view | |
| Oliverio | Front Pediatr | Evolving Clinical Applications of Tissue Transcriptomics in Kidney Disease. | 2019-08-01 | 10.3389/fped.2019.00306 | view | ||
| Van Der Byl | Methods Mol. Biol. | Single-Cell Transcriptome Analysis of T Cells. | 2019-08-01 | 10.1007/978-1-4939-9728-2_16 | view | ||
| Takeda | Immunity | Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial Cell Heterogeneity and Mechanisms of Homing for Neutrophils. | 2019-08-01 | 10.1016/j.immuni.2019.06.027 | 2 | view | |
| Zhang | PLoS ONE | Transcriptomic profile of early zebrafish PGCs by single cell sequencing. | 2019-08-01 | 10.1371/journal.pone.0220364 | view | ||
| Carter | Front Immunol | Single T Cell Sequencing Demonstrates the Functional Role of αβ TCR Pairing in Cell Lineage and Antigen Specificity. | 2019-08-01 | 10.3389/fimmu.2019.01516 | 5 | view | |
| Kaplan | Invest. Ophthalmol. Vis. Sci. | Single-Cell RNA Transcriptome Helps Define the Limbal/Corneal Epithelial Stem/Early Transit Amplifying Cells and How Autophagy Affects This Population. | 2019-08-01 | 10.1167/iovs.19-27656 | view | ||
| Sharma | Immunometabolism | Netrin-1 Alters Adipose Tissue Macrophage Fate and Function in Obesity. | 2019-08-01 | 10.20900/immunometab20190010 | 5 | view | |
| Chen | Commun Biol | Single-cell landscape in mammary epithelium reveals bipotent-like cells associated with breast cancer risk and outcome. | 2019-08-01 | 10.1038/s42003-019-0554-8 | 4 | view | |
| Dai | Medicine (Baltimore) | Single-cell transcriptional profiling reveals the heterogenicity in colorectal cancer. | 2019-08-01 | 10.1097/MD.0000000000016916 | 2 | view | |
| Gambardella | Front Genet | A Tool for Visualization and Analysis of Single-Cell RNA-Seq Data Based on Text Mining. | 2019-08-01 | 10.3389/fgene.2019.00734 | 2 | view | |
| Highton | Wellcome Open Res | Single-cell transcriptome analysis of CD8 + T-cell memory inflation. | 2019-08-01 | 10.12688/wellcomeopenres.15115.1 | view | ||
| Afik | Life Sci Alliance | Reconstructing B-cell receptor sequences from short-read single-cell RNA sequencing with BRAPeS. | 2019-08-01 | 10.26508/lsa.201900371 | 3 | view | |
| Elyahu | Sci Adv | Aging promotes reorganization of the CD4 T cell landscape toward extreme regulatory and effector phenotypes. | 2019-08-01 | 10.1126/sciadv.aaw8330 | view | ||
| Senabouth | Gigascience | ascend: R package for analysis of single-cell RNA-seq data. | 2019-08-01 | 10.1093/gigascience/giz087 | 11 | view | |
| Zhang | Curr Opin Toxicol | Embracing Systems Toxicology at Single-Cell Resolution. | 2019-08-01 | 10.1016/j.cotox.2019.04.003 | view | ||
| von Maydell | J. Neurophysiol. | The interplay between microglial states and major risk factors in Alzheimer's disease through the eyes of single-cell RNA-sequencing: beyond black and white. | 2019-07-31 | 10.1152/jn.00395.2019 | view | ||
| Liu | Cell Rep | Single-Cell RNA-Seq of the Developing Cardiac Outflow Tract Reveals Convergent Development of the Vascular Smooth Muscle Cells. | 2019-07-30 | 10.1016/j.celrep.2019.06.092 | 11 | view | |
| Gawel | Genome Med | A validated single-cell-based strategy to identify diagnostic and therapeutic targets in complex diseases. | 2019-07-30 | 10.1186/s13073-019-0657-3 | view | ||
| Wirka | Nat. Med. | Atheroprotective roles of smooth muscle cell phenotypic modulation and the TCF21 disease gene as revealed by single-cell analysis. | 2019-07-29 | 10.1038/s41591-019-0512-5 | 2 | view | |
| Ma | Bioinformatics | ACTINN: Automated Identification of Cell Types in Single Cell RNA Sequencing. | 2019-07-29 | 10.1093/bioinformatics/btz592 | 1 | view | |
| Xu | IEEE/ACM Trans Comput Biol Bioinform | A Gene Rank Based Approach for Single Cell Similarity Assessment and Clustering. | 2019-07-29 | 10.1109/TCBB.2019.2931582 | 2 | view | |
| Van Kuijk | Cardiovasc. Res. | Heterogeneity and plasticity in healthy and atherosclerotic vasculature explored by single cell sequencing. | 2019-07-27 | 10.1093/cvr/cvz185 | view | ||
| Segal | Nat Commun | Single cell analysis of human foetal liver captures the transcriptional profile of hepatobiliary hybrid progenitors. | 2019-07-26 | 10.1038/s41467-019-11266-x | 25 | view | |
| Gu | Arterioscler. Thromb. Vasc. Biol. | Single-Cell RNA-Sequencing and Metabolomics Analyses Reveal the Contribution of Perivascular Adipose Tissue Stem Cells to Vascular Remodeling. | 2019-07-25 | 10.1161/ATVBAHA.119.312732 | 8 | view | |
| Liu | Arterioscler. Thromb. Vasc. Biol. | Smooth Muscle Cell Phenotypic Diversity. | 2019-07-25 | 10.1161/ATVBAHA.119.312131 | 9 | view | |
| Yang | BMC Genomics | Single-cell RNA-seq of esophageal squamous cell carcinoma cell line with fractionated irradiation reveals radioresistant gene expression patterns. | 2019-07-25 | 10.1186/s12864-019-5970-0 | view | ||
| Halbritter | Cancer Discov | Epigenomics and Single-cell Sequencing Define a Developmental Hierarchy in Langerhans Cell Histiocytosis. | 2019-07-25 | 10.1158/2159-8290.CD-19-0138 | view | ||
| Maroni | Int J Mol Sci | The Role of Prep1 in the Regulation of Mesenchymal Stromal Cells. | 2019-07-25 | 10.3390/ijms20153639 | view | ||
| Nash | Dis Model Mech | Genome-wide analysis of androgen receptor binding and transcriptomic analysis in mesenchymal subsets during prostate development. | 2019-07-25 | 10.1242/dmm.039297 | view | ||
| Cembrowski | J. Neurosci. Methods | Single-cell transcriptomics as a framework and roadmap for understanding the brain. | 2019-07-25 | 10.1016/j.jneumeth.2019.108353 | 5 | view | |
| Zhang | Sci Data | Deep single-cell RNA sequencing data of individual T cells from treatment-naïve colorectal cancer patients. | 2019-07-24 | 10.1038/s41597-019-0131-5 | 2 | view | |
| de Soysa | Nature | Single-cell analysis of cardiogenesis reveals basis for organ-level developmental defects. | 2019-07-24 | 10.1038/s41586-019-1414-x | view | ||
| Hovestadt | Nature | Resolving medulloblastoma cellular architecture by single-cell genomics. | 2019-07-24 | 10.1038/s41586-019-1434-6 | 38 | view | |
| Hosein | JCI Insight | Cellular heterogeneity during mouse pancreatic ductal adenocarcinoma progression at single-cell resolution. | 2019-07-23 | 10.1172/jci.insight.129212 | 11 | view | |
| Davis-Marcisak | Cancer Res. | Differential variation analysis enables detection of tumor heterogeneity using single-cell RNA-sequencing data. | 2019-07-23 | 10.1158/0008-5472.CAN-18-3882 | view | ||
| Wohnhaas | Sci Rep | DMSO cryopreservation is the method of choice to preserve cells for droplet-based single-cell RNA sequencing. | 2019-07-23 | 10.1038/s41598-019-46932-z | 4 | view | |
| Bossel Ben-Moshe | Nat Commun | Predicting bacterial infection outcomes using single cell RNA-sequencing analysis of human immune cells. | 2019-07-22 | 10.1038/s41467-019-11257-y | view | ||
| Yu | BMC Cancer | Estimation of immune cell content in tumor using single-cell RNA-seq reference data. | 2019-07-19 | 10.1186/s12885-019-5927-3 | 3 | view | |
| Watanabe | Nat Commun | Genetic mapping of cell type specificity for complex traits. | 2019-07-19 | 10.1038/s41467-019-11181-1 | view | ||
| Andriani | Sci Rep | A direct comparison of interphase FISH versus low-coverage single cell sequencing to detect aneuploidy reveals respective strengths and weaknesses. | 2019-07-19 | 10.1038/s41598-019-46606-w | view | ||
| Kim | Brain Res. | Non-Cell Autonomous Mechanism of Parkinson's Disease Pathology Caused by G2019S LRRK2 Mutation in Ashkenazi Jewish Patient: Single Cell Analysis. | 2019-07-19 | 10.1016/j.brainres.2019.146342 | view | ||
| Li | Development | Nkx2-5 defines a subpopulation of pacemaker cells and is essential for the physiological function of the sinoatrial node in mice. | 2019-07-18 | 10.1242/dev.178145 | view | ||
| Fan | Nat Commun | Single-cell reconstruction of follicular remodeling in the human adult ovary. | 2019-07-18 | 10.1038/s41467-019-11036-9 | 8 | view | |
| Camargo | DNA Res. | Uncovering the mouse olfactory long non-coding transcriptome with a novel machine-learning model. | 2019-07-18 | 10.1093/dnares/dsz015 | view | ||
| Xin | J Vis Exp | Single-cell RNA Sequencing and Analysis of Human Pancreatic Islets. | 2019-07-18 | 10.3791/59866 | view | ||
| Zhang | Epigenetics | An in vitro attempt at precision toxicology reveals the involvement of DNA methylation alteration in ochratoxin A-induced G0/G1 phase arrest. | 2019-07-17 | 10.1080/15592294.2019.1644878 | 1 | view | |
| Wegmann | Genome Biol. | CellSIUS provides sensitive and specific detection of rare cell populations from complex single-cell RNA-seq data. | 2019-07-17 | 10.1186/s13059-019-1739-7 | 2 | view | |
| Hendriks | Nat Commun | NASC-seq monitors RNA synthesis in single cells. | 2019-07-17 | 10.1038/s41467-019-11028-9 | 9 | view | |
| Lv | Sci China Life Sci | Single-cell RNA sequencing profiling of the effects of aging on alveolar stem cells. | 2019-07-17 | 10.1007/s11427-019-9583-9 | view | ||
| Tan | Cell Syst | SingleCellNet: A Computational Tool to Classify Single Cell RNA-Seq Data Across Platforms and Across Species. | 2019-07-17 | 10.1016/j.cels.2019.06.004 | 6 | view | |
| Kallionpää | Diabetes | Early Detection of Peripheral Blood Cell Signature in Children Developing Beta-Cell Autoimmunity at a Young Age. | 2019-07-16 | 10.2337/db19-0287 | view | ||
| Davizon-Castillo | Blood | TNF-alpha driven inflammation and mitochondrial dysfunction define the platelet hyperreactivity of aging. | 2019-07-16 | 10.1182/blood.2019000200 | view | ||
| Singh | Nat Commun | High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes. | 2019-07-16 | 10.1038/s41467-019-11049-4 | view | ||
| Barkas | Nat. Methods | Joint analysis of heterogeneous single-cell RNA-seq dataset collections. | 2019-07-15 | 10.1038/s41592-019-0466-z | view | ||
| Sarkar | Bioinformatics | Minnow: a principled framework for rapid simulation of dscRNA-seq data at the read level. | 2019-07-15 | 10.1093/bioinformatics/btz351 | 2 | view | |
| Li | Bioinformatics | A statistical simulator scDesign for rational scRNA-seq experimental design. | 2019-07-15 | 10.1093/bioinformatics/btz321 | view | ||
| Sturm | Bioinformatics | Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology. | 2019-07-15 | 10.1093/bioinformatics/btz363 | view | ||
| Climente-González | Bioinformatics | Block HSIC Lasso: model-free biomarker detection for ultra-high dimensional data. | 2019-07-15 | 10.1093/bioinformatics/btz333 | 2 | view | |
| Stražar | Bioinformatics | scOrange-a tool for hands-on training of concepts from single-cell data analytics. | 2019-07-15 | 10.1093/bioinformatics/btz348 | 2 | view | |
| Skums | Bioinformatics | Inference of clonal selection in cancer populations using single-cell sequencing data. | 2019-07-15 | 10.1093/bioinformatics/btz392 | view | ||
| Kovács | Int J Mol Sci | Unravelling the Role of Trophoblastic-Derived Extracellular Vesicles in Regulatory T Cell Differentiation. | 2019-07-14 | 10.3390/ijms20143457 | 2 | view | |
| Tracy | BMC Bioinformatics | RESCUE: imputing dropout events in single-cell RNA-sequencing data. | 2019-07-12 | 10.1186/s12859-019-2977-0 | 5 | view | |
| Zhang | Genes (Basel) | SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples. | 2019-07-12 | 10.3390/genes10070531 | 3 | view | |
| Hwang | Leuk. Res. | Targeted sequencing aids in identifying clonality in chronic myelomonocytic leukemia. | 2019-07-12 | 10.1016/j.leukres.2019.106190 | 1 | view | |
| Pont | Nucleic Acids Res. | Single-Cell Signature Explorer for comprehensive visualization of single cell signatures across scRNA-seq datasets. | 2019-07-11 | 10.1093/nar/gkz601 | 18 | view | |
| Suvà | Mol. Cell | Single-Cell RNA Sequencing in Cancer: Lessons Learned and Emerging Challenges. | 2019-07-11 | 10.1016/j.molcel.2019.05.003 | 39 | view | |
| Lam | Exp. Cell Res. | Single cell analysis of autism patient with bi-allelic NRXN1-alpha deletion reveals skewed fate choice in neural progenitors and impaired neuronal functionality. | 2019-07-11 | 10.1016/j.yexcr.2019.06.014 | 6 | view | |
| Zhang | Circ. Res. | Generation of Quiescent Cardiac Fibroblasts from Human Induced Pluripotent Stem Cells for In Vitro Modeling of Cardiac Fibrosis. | 2019-07-10 | 10.1161/CIRCRESAHA.119.315491 | 2 | view | |
| Aizarani | Nature | A human liver cell atlas reveals heterogeneity and epithelial progenitors. | 2019-07-10 | 10.1038/s41586-019-1373-2 | 4 | view | |
| Erhard | Nature | scSLAM-seq reveals core features of transcription dynamics in single cells. | 2019-07-10 | 10.1038/s41586-019-1369-y | 5 | view | |
| Goodyer | Circ. Res. | Transcriptomic Profiling of the Developing Cardiac Conduction System at Single-Cell Resolution. | 2019-07-09 | 10.1161/CIRCRESAHA.118.314578 | 8 | view | |
| Wolock | Cell Rep | Mapping Distinct Bone Marrow Niche Populations and Their Differentiation Paths. | 2019-07-09 | 10.1016/j.celrep.2019.06.031 | 11 | view | |
| Tang | Chest | Metabolic Changes in Lymphangioleiomyomatosis Patients Treated with Sirolimus and Hydroxychloroquine. | 2019-07-09 | 10.1016/j.chest.2019.05.038 | view | ||
| Neftel | Cell | An Integrative Model of Cellular States, Plasticity, and Genetics for Glioblastoma. | 2019-07-09 | 10.1016/j.cell.2019.06.024 | 79 | view | |
| Kotliar | Elife | Identifying gene expression programs of cell-type identity and cellular activity with single-cell RNA-Seq. | 2019-07-08 | 10.7554/eLife.43803 | 20 | view | |
| Kinalis | BMC Bioinformatics | Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data. | 2019-07-08 | 10.1186/s12859-019-2952-9 | 3 | view | |
| Tsoucas | Nat Commun | Accurate estimation of cell-type composition from gene expression data. | 2019-07-05 | 10.1038/s41467-019-10802-z | 5 | view | |
| Singh | Sci Rep | Etv2 transcriptionally regulates Yes1 and promotes cell proliferation during embryogenesis. | 2019-07-05 | 10.1038/s41598-019-45841-5 | view | ||
| Qi | Brief. Bioinformatics | Clustering and classification methods for single-cell RNA-sequencing data. | 2019-07-04 | 10.1093/bib/bbz062 | view | ||
| Herrmann | BMC Cancer | Infliximab therapy together with tyrosine kinase inhibition targets leukemic stem cells in chronic myeloid leukemia. | 2019-07-04 | 10.1186/s12885-019-5871-2 | view | ||
| Han | Development | The lncRNA Hand2os1/Uph locus orchestrates heart development through regulation of precise expression of Hand2. | 2019-07-04 | 10.1242/dev.176198 | 12 | view | |
| Osorio | Sci Data | Single-cell RNA sequencing of a European and an African lymphoblastoid cell line. | 2019-07-04 | 10.1038/s41597-019-0116-4 | 1 | view | |
| Peng | Cell Res. | Single-cell RNA-seq highlights intra-tumoral heterogeneity and malignant progression in pancreatic ductal adenocarcinoma. | 2019-07-04 | 10.1038/s41422-019-0195-y | 29 | view | |
| Hu | PLoS Biol. | Dissecting the transcriptome landscape of the human fetal neural retina and retinal pigment epithelium by single-cell RNA-seq analysis. | 2019-07-03 | 10.1371/journal.pbio.3000365 | 23 | view | |
| de Vries | Gut | High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity. | 2019-07-03 | 10.1136/gutjnl-2019-318672 | view | ||
| Darnet | Proc. Natl. Acad. Sci. U.S.A. | Deep evolutionary origin of limb and fin regeneration. | 2019-07-03 | 10.1073/pnas.1900475116 | 4 | view | |
| Waise | Sci Rep | An optimised tissue disaggregation and data processing pipeline for characterising fibroblast phenotypes using single-cell RNA sequencing. | 2019-07-03 | 10.1038/s41598-019-45842-4 | 3 | view | |
| Dulken | Nature | Single-cell analysis reveals T cell infiltration in old neurogenic niches. | 2019-07-03 | 10.1038/s41586-019-1362-5 | 36 | view | |
| Nam | Nature | Somatic mutations and cell identity linked by Genotyping of Transcriptomes. | 2019-07-03 | 10.1038/s41586-019-1367-0 | 7 | view | |
| Brandt | Nat Commun | Cell type-dependent differential activation of ERK by oncogenic KRAS in colon cancer and intestinal epithelium. | 2019-07-02 | 10.1038/s41467-019-10954-y | 6 | view | |
| Fasterius | Sci Rep | Single-cell RNA-seq variant analysis for exploration of genetic heterogeneity in cancer. | 2019-07-02 | 10.1038/s41598-019-45934-1 | 2 | view | |
| Low | Cell Stem Cell | Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network. | 2019-07-02 | 10.1016/j.stem.2019.06.009 | 21 | view | |
| Mawla | Diabetes | Navigating the Depths and Avoiding the Shallows of Pancreatic Islet Cell Transcriptomes. | 2019-07-01 | 10.2337/dbi18-0019 | view | ||
| Buenaventura | Invest. Ophthalmol. Vis. Sci. | Identification of Genes With Enriched Expression in Early Developing Mouse Cone Photoreceptors. | 2019-07-01 | 10.1167/iovs.19-26951 | 1 | view | |
| Zhang | Stem Cells | CD166 engagement augments mouse and human hematopoietic progenitor function via activation of stemness and cell cycle pathways. | 2019-07-01 | 10.1002/stem.3053 | view | ||
| Domanskyi | BMC Bioinformatics | Polled Digital Cell Sorter (p-DCS): Automatic identification of hematological cell types from single cell RNA-sequencing clusters. | 2019-07-01 | 10.1186/s12859-019-2951-x | view | ||
| Zhang | Cancer Immunol Res | Recharacterizing Tumor-Infiltrating Lymphocytes by Single-Cell RNA Sequencing. | 2019-07-01 | 10.1158/2326-6066.CIR-18-0658 | 6 | view | |
| Janiszewska | Nat. Cell Biol. | Subclonal cooperation drives metastasis by modulating local and systemic immune microenvironments. | 2019-07-01 | 10.1038/s41556-019-0346-x | 14 | view | |
| Pinto | Eur. Heart J. | Mapping human pluripotent stem cell-endothelial cell differentiation using scRNA-seq: a step towards therapeutic angiogenesis. | 2019-07-01 | 10.1093/eurheartj/ehz464 | view | ||
| Tran | Dev. Cell | In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes. | 2019-07-01 | 10.1016/j.devcel.2019.06.001 | view | ||
| Theil | Front Immunol | Imaging Mass Cytometry and Single-Cell Genomics Reveal Differential Depletion and Repletion of B-Cell Populations Following Ofatumumab Treatment in Cynomolgus Monkeys. | 2019-07-01 | 10.3389/fimmu.2019.01340 | view | ||
| Li | Theranostics | Regulatory T-cells regulate neonatal heart regeneration by potentiating cardiomyocyte proliferation in a paracrine manner. | 2019-07-01 | 10.7150/thno.32734 | 6 | view | |
| Federico | Front Genet | Pipeliner: A Nextflow-Based Framework for the Definition of Sequencing Data Processing Pipelines. | 2019-07-01 | 10.3389/fgene.2019.00614 | 4 | view | |
| Greenblatt | J. Bone Miner. Res. | The Unmixing Problem: A Guide to Applying Single-Cell RNA Sequencing to Bone. | 2019-07-01 | 10.1002/jbmr.3802 | view | ||
| Zeng | Front Genet | Single-Cell RNA Sequencing-Based Computational Analysis to Describe Disease Heterogeneity. | 2019-07-01 | 10.3389/fgene.2019.00629 | view | ||
| Chkhaidze | PLoS Comput. Biol. | Spatially constrained tumour growth affects the patterns of clonal selection and neutral drift in cancer genomic data. | 2019-07-01 | 10.1371/journal.pcbi.1007243 | 14 | view | |
| Rossi | Science | Obesity remodels activity and transcriptional state of a lateral hypothalamic brake on feeding. | 2019-06-28 | 10.1126/science.aax1184 | 6 | view | |
| Fang | Anal. Chem. | Nondestructive identification and accurate isolation of single cells through a chip with Raman optical tweezers. | 2019-06-28 | 10.1021/acs.analchem.9b01604 | view | ||
| Ma | BMC Mol Cell Biol | Single cell RNA-Seq reveals pre-cDCs fate determined by transcription factor combinatorial dose. | 2019-06-28 | 10.1186/s12860-019-0199-y | 3 | view | |
| Chen | J. Am. Soc. Nephrol. | Renal-Tubule Epithelial Cell Nomenclature for Single-Cell RNA-Sequencing Studies. | 2019-06-28 | 10.1681/ASN.2019040415 | 7 | view | |
| Petegrosso | Brief. Bioinformatics | Machine learning and statistical methods for clustering single-cell RNA-sequencing data. | 2019-06-27 | 10.1093/bib/bbz063 | 3 | view | |
| Tritschler | Development | Concepts and limitations for learning developmental trajectories from single cell genomics. | 2019-06-27 | 10.1242/dev.170506 | 6 | view | |
| Fang | Dev. Biol. | Proteomics and single-cell RNA analysis of Akap4-knockout mice model confirm indispensable role of Akap4 in spermatogenesis. | 2019-06-27 | 10.1016/j.ydbio.2019.06.017 | 10 | view | |
| McCracken | Eur. Heart J. | Transcriptional dynamics of pluripotent stem cell-derived endothelial cell differentiation revealed by single-cell RNA sequencing. | 2019-06-26 | 10.1093/eurheartj/ehz351 | view | ||
| Law | Nat Commun | Developmental kinetics and transcriptome dynamics of stem cell specification in the spermatogenic lineage. | 2019-06-26 | 10.1038/s41467-019-10596-0 | 1 | view | |
| Lukacsovich | Cell Rep | Single-Cell RNA-Seq Reveals Developmental Origins and Ontogenetic Stability of Neurexin Alternative Splicing Profiles. | 2019-06-25 | 10.1016/j.celrep.2019.05.090 | view | ||
| Campbell | Exp. Neurol. | Matrix-metalloproteinase expression and gelatinase activity in the avian retina and their influence on Müller glia proliferation. | 2019-06-25 | 10.1016/j.expneurol.2019.112984 | 3 | view | |
| Patil | J. Neuroendocrinol. | Prolactin receptor expression in mouse dorsal root ganglia neuronal subtypes is sex-dependent. | 2019-06-24 | 10.1111/jne.12759 | view | ||
| Saatcioglu | Elife | Single-cell sequencing of neonatal uterus reveals an endometrial progenitor indispensable for fertility. | 2019-06-24 | 10.7554/eLife.46349 | view | ||
| Ren | Am. J. Respir. Crit. Care Med. | Postnatal Alveologenesis Depends on FOXF1 Signaling in c-KIT+ Endothelial Progenitor Cells. | 2019-06-24 | 10.1164/rccm.201812-2312OC | view | ||
| Tu | Math Biosci Eng | Single-cell data-driven mathematical model reveals possible molecular mechanisms of embryonic stem-cell differentiation. | 2019-06-24 | 10.3934/mbe.2019294 | view | ||
| Ponzetta | Cell | Neutrophils Driving Unconventional T Cells Mediate Resistance against Murine Sarcomas and Selected Human Tumors. | 2019-06-22 | 10.1016/j.cell.2019.05.047 | 15 | view | |
| Xiong | Circ. Res. | Single-Cell Transcriptomics Reveals Chemotaxis Mediated Intra-Organ Crosstalk During Cardiogenesis. | 2019-06-21 | 10.1161/CIRCRESAHA.119.315243 | 2 | view | |
| de Kanter | Nucleic Acids Res. | CHETAH: a selective, hierarchical cell type identification method for single-cell RNA sequencing. | 2019-06-21 | 10.1093/nar/gkz543 | view | ||
| Malikic | Nat Commun | Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data. | 2019-06-21 | 10.1038/s41467-019-10737-5 | 15 | view | |
| Wang | Genes Dev. | Enhancement of LIN28B-induced hematopoietic reprogramming by IGF2BP3. | 2019-06-20 | 10.1101/gad.325100.119 | view | ||
| Morse | Eur. Respir. J. | Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis. | 2019-06-20 | 10.1183/13993003.02441-2018 | 3 | view | |
| Bell | Nat Commun | Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia. | 2019-06-20 | 10.1038/s41467-019-10652-9 | 10 | view | |
| Gerovska | Sci Rep | Computational analysis of single-cell transcriptomics data elucidates the stabilization of Oct4 expression in the E3.25 mouse preimplantation embryo. | 2019-06-20 | 10.1038/s41598-019-45438-y | view | ||
| Verboom | Nucleic Acids Res. | SMARTer single cell total RNA sequencing. | 2019-06-19 | 10.1093/nar/gkz535 | 9 | view | |
| Luecken | Mol. Syst. Biol. | Current best practices in single-cell RNA-seq analysis: a tutorial. | 2019-06-19 | 10.15252/msb.20188746 | 83 | view | |
| Zepp | Nat. Rev. Mol. Cell Biol. | Cellular crosstalk in the development and regeneration of the respiratory system. | 2019-06-19 | 10.1038/s41580-019-0141-3 | view | ||
| Joyce | J. Clin. Invest. | TGFβ signaling underlies hematopoietic dysfunction and bone marrow failure in Shwachman-Diamond Syndrome. | 2019-06-18 | 10.1172/JCI125375 | view | ||
| Ferrero | Hum. Reprod. | Single-cell RNA sequencing of oocytes from ovarian endometriosis patients reveals a differential transcriptomic profile associated with lower quality. | 2019-06-18 | 10.1093/humrep/dez053 | 1 | view | |
| Kubli | Nat Commun | Fcmr regulates mononuclear phagocyte control of anti-tumor immunity. | 2019-06-18 | 10.1038/s41467-019-10619-w | view | ||
| Tan | Cell Rep | Single-Cell Transcriptomics Identifies the Adaptation of Scart1+ Vγ6+ T Cells to Skin Residency as Activated Effector Cells. | 2019-06-18 | 10.1016/j.celrep.2019.05.064 | view | ||
| Su | Proc. Natl. Acad. Sci. U.S.A. | α2-Chimaerin is essential for neural stem cell homeostasis in mouse adult neurogenesis. | 2019-06-17 | 10.1073/pnas.1903891116 | view | ||
| Li | Sci Data | Multiplex RNA single molecule FISH of inducible mRNAs in single yeast cells. | 2019-06-17 | 10.1038/s41597-019-0106-6 | 3 | view | |
| Fu | Nat. Cell Biol. | Myc and Dnmt1 impede the pluripotent to totipotent state transition in embryonic stem cells. | 2019-06-17 | 10.1038/s41556-019-0343-0 | 9 | view | |
| Vieira Braga | Nat. Med. | A cellular census of human lungs identifies novel cell states in health and in asthma. | 2019-06-17 | 10.1038/s41591-019-0468-5 | view | ||
| Gunner | Nat. Neurosci. | Sensory lesioning induces microglial synapse elimination via ADAM10 and fractalkine signaling. | 2019-06-17 | 10.1038/s41593-019-0419-y | 3 | view | |
| McGinnis | Nat. Methods | MULTI-seq: sample multiplexing for single-cell RNA sequencing using lipid-tagged indices. | 2019-06-17 | 10.1038/s41592-019-0433-8 | 29 | view | |
| Yao | Nat. Immunol. | Single-cell RNA-seq reveals TOX as a key regulator of CD8+ T cell persistence in chronic infection. | 2019-06-17 | 10.1038/s41590-019-0403-4 | view | ||
| Arazi | Nat. Immunol. | The immune cell landscape in kidneys of patients with lupus nephritis. | 2019-06-17 | 10.1038/s41590-019-0398-x | 56 | view | |
| Gallegos | Dev. Biol. | Fibroblast growth factor signaling mediates progenitor cell aggregation and nephron regeneration in the adult zebrafish kidney. | 2019-06-17 | 10.1016/j.ydbio.2019.06.011 | 2 | view | |
| Vazquez | Am. J. Reprod. Immunol. | Single-cell technologies in reproductive immunology. | 2019-06-17 | 10.1111/aji.13157 | view | ||
| Ye | Bioinformatics | DECENT: Differential Expression with Capture Efficiency adjustmeNT for single-cell RNA-seq data. | 2019-06-14 | 10.1093/bioinformatics/btz453 | 12 | view | |
| Foster | Mol. Reprod. Dev. | Single cell RNA-seq in the sea urchin embryo show marked cell-type specificity in the Delta/Notch pathway. | 2019-06-14 | 10.1002/mrd.23181 | view | ||
| Wang | Genome Res. | Single-molecule long-read sequencing reveals the chromatin basis of gene expression. | 2019-06-14 | 10.1101/gr.251116.119 | 5 | view | |
| Tibbitt | Immunity | Single-Cell RNA Sequencing of the T Helper Cell Response to House Dust Mites Defines a Distinct Gene Expression Signature in Airway Th2 Cells. | 2019-06-14 | 10.1016/j.immuni.2019.05.014 | 15 | view | |
| Elyada | Cancer Discov | Cross-species single-cell analysis of pancreatic ductal adenocarcinoma reveals antigen-presenting cancer-associated fibroblasts. | 2019-06-13 | 10.1158/2159-8290.CD-19-0094 | 43 | view | |
| Zhang | Nat Commun | Simulating multiple faceted variability in single cell RNA sequencing. | 2019-06-13 | 10.1038/s41467-019-10500-w | 10 | view | |
| Adey | Cell | Integration of Single-Cell Genomics Datasets. | 2019-06-13 | 10.1016/j.cell.2019.05.034 | 6 | view | |
| Nakamura-Ishizu | Cell | Beginning of a New Era: Mapping the Bone Marrow Niche. | 2019-06-13 | 10.1016/j.cell.2019.05.042 | view | ||
| Ren | Genomics Proteomics Bioinformatics | SSCC: A Novel Computational Framework for Rapid and Accurate Clustering Large-scale Single Cell RNA-seq Data. | 2019-06-13 | 10.1016/j.gpb.2018.10.003 | 3 | view | |
| Rao | Compr Physiol | Physiology of Electrolyte Transport in the Gut: Implications for Disease. | 2019-06-12 | 10.1002/cphy.c180011 | view | ||
| Liu | Anal. Chem. | Bacterial Single Cell Whole Transcriptome Amplification in Microfluidic Platform Shows Putative Gene Expression Heterogeneity. | 2019-06-12 | 10.1021/acs.analchem.8b04773 | view | ||
| Zhou | Cell Stem Cell | Single-Cell Transcriptomic Analyses of Cell Fate Transitions during Human Cardiac Reprogramming. | 2019-06-12 | 10.1016/j.stem.2019.05.020 | 10 | view | |
| Ranzoni | Essays Biochem. | Application of single-cell RNA sequencing methodologies in understanding haematopoiesis and immunology. | 2019-06-11 | 10.1042/EBC20180072 | 2 | view | |
| Lu | Nat Rev Cardiol | RNA-based diagnostic and therapeutic strategies for cardiovascular disease. | 2019-06-11 | 10.1038/s41569-019-0218-x | 22 | view | |
| Li | Anal. Chem. | Detachable Acoustophoretic System for Fluorescence Activated Sorting at Single Droplet Level. | 2019-06-10 | 10.1021/acs.analchem.9b01708 | view | ||
| Peng | BMC Bioinformatics | Combining gene ontology with deep neural networks to enhance the clustering of single cell RNA-Seq data. | 2019-06-10 | 10.1186/s12859-019-2769-6 | 18 | view | |
| Ho | Cancer Lett. | Single-cell transcriptomics reveals the landscape of intra-tumoral heterogeneity and stemness-related subpopulations in liver cancer. | 2019-06-10 | 10.1016/j.canlet.2019.06.002 | 1 | view | |
| Seiler | Cell Mol Gastroenterol Hepatol | Single-Cell Analysis Reveals Regional Reprogramming during Adaptation to Massive Small Bowel Resection in Mice. | 2019-06-10 | 10.1016/j.jcmgh.2019.06.001 | 4 | view | |
| Zhang | Nucleic Acids Res. | Learning common and specific patterns from data of multiple interrelated biological scenarios with matrix factorization. | 2019-06-08 | 10.1093/nar/gkz488 | 1 | view | |
| Zhang | J Ovarian Res | Mitochondrial dysfunction and endoplasmic reticulum stress involved in oocyte aging: an analysis using single-cell RNA-sequencing of mouse oocytes. | 2019-06-08 | 10.1186/s13048-019-0529-x | 2 | view | |
| Hung | J. Immunol. | Cell-Intrinsic Wnt4 Influences Conventional Dendritic Cell Fate Determination to Suppress Type 2 Immunity. | 2019-06-07 | 10.4049/jimmunol.1900363 | 3 | view | |
| Deyell | Semin. Cell Dev. Biol. | Large scale control and programming of gene expression using CRISPR. | 2019-06-07 | 10.1016/j.semcdb.2019.05.013 | 1 | view | |
| Abrams | BMC Bioinformatics | A computational method to aid the design and analysis of single cell RNA-seq experiments for cell type identification. | 2019-06-06 | 10.1186/s12859-019-2817-2 | 2 | view | |
| Todd | J Neuroinflammation | Reactive microglia and IL1β/IL-1R1-signaling mediate neuroprotection in excitotoxin-damaged mouse retina. | 2019-06-06 | 10.1186/s12974-019-1505-5 | 2 | view | |
| Velasco | Nature | Individual brain organoids reproducibly form cell diversity of the human cerebral cortex. | 2019-06-05 | 10.1038/s41586-019-1289-x | 21 | view | |
| Kolter | Immunity | A Subset of Skin Macrophages Contributes to the Surveillance and Regeneration of Local Nerves. | 2019-06-05 | 10.1016/j.immuni.2019.05.009 | 7 | view | |
| Iacono | Genome Biol. | Single-cell transcriptomics unveils gene regulatory network plasticity. | 2019-06-04 | 10.1186/s13059-019-1713-4 | 28 | view | |
| Bastidas-Ponce | Development | Massive single-cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis. | 2019-06-03 | 10.1242/dev.173849 | view | ||
| Liu | Cell Death Dis | Dissecting cell diversity and connectivity in skeletal muscle for myogenesis. | 2019-06-03 | 10.1038/s41419-019-1647-5 | 1 | view | |
| Pellin | Nat Commun | A comprehensive single cell transcriptional landscape of human hematopoietic progenitors. | 2019-06-03 | 10.1038/s41467-019-10291-0 | 3 | view | |
| Welch | Cell | Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity. | 2019-06-03 | 10.1016/j.cell.2019.05.006 | 71 | view | |
| Yoshimura | Kidney Int. | Podocyte development, disease, and stem cell research. | 2019-06-03 | 10.1016/j.kint.2019.04.044 | 1 | view | |
| Zhang | Endocrinology | Regulation of Feeding-Related Behaviors by Arcuate Neuropeptide Y Neurons. | 2019-06-01 | 10.1210/en.2019-00056 | 4 | view | |
| Gao | J Zhejiang Univ Sci B | Novel insights into cell cycle regulation of cell fate determination. | 2019-06-01 | 10.1631/jzus.B1900197 | 1 | view | |
| Gu | Arterioscler. Thromb. Vasc. Biol. | Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mice Defined by Single-Cell RNA Sequencing. | 2019-06-01 | 10.1161/ATVBAHA.119.312399 | 23 | view | |
| Rhodes | Front Immunol | Human Dendritic Cell Subsets, Ontogeny, and Impact on HIV Infection. | 2019-06-01 | 10.3389/fimmu.2019.01088 | view | ||
| Guillot | Hepatol Commun | Liver Macrophages: Old Dogmas and New Insights. | 2019-06-01 | 10.1002/hep4.1356 | 32 | view | |
| Lee | Methods Mol. Biol. | Cancer Stem Cells: Concepts, Challenges, and Opportunities for Cancer Therapy. | 2019-06-01 | 10.1007/978-1-4939-9524-0_4 | view | ||
| El Amrani | PeerJ | Detection of condition-specific marker genes from RNA-seq data with MGFR. | 2019-06-01 | 10.7717/peerj.6970 | view | ||
| Jonasson | Front Genet | Identification of Breast Cancer Stem Cell Related Genes Using Functional Cellular Assays Combined With Single-Cell RNA Sequencing in MDA-MB-231 Cells. | 2019-06-01 | 10.3389/fgene.2019.00500 | view | ||
| Wiedmeier | Cancer Treat. Res. | Single-Cell Sequencing in Precision Medicine. | 2019-06-01 | 10.1007/978-3-030-16391-4_9 | view | ||
| Ji | Curr Protoc Mol Biol | Single-Cell RNA-seq: Introduction to Bioinformatics Analysis. | 2019-06-01 | 10.1002/cpmb.92 | view | ||
| Der | Lupus Sci Med | Single-cell RNA sequencing for the study of lupus nephritis. | 2019-06-01 | 10.1136/lupus-2019-000329 | 2 | view | |
| Wang | Medicine (Baltimore) | Single-cell RNA sequencing reveals novel gene expression signatures of trastuzumab treatment in HER2+ breast cancer: A pilot study. | 2019-06-01 | 10.1097/MD.0000000000015872 | view | ||
| Diaz-Mejia | F1000Res | Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data. | 2019-06-01 | 10.12688/f1000research.18490.3 | view | ||
| Kalluri | Circulation | Single Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial Cell Populations. | 2019-05-31 | 10.1161/CIRCULATIONAHA.118.038362 | 35 | view | |
| Addo | Eur. J. Immunol. | Single-cell transcriptomes of murine bone marrow stromal cells Reveal niche-associated heterogeneity. | 2019-05-31 | 10.1002/eji.201848053 | 4 | view | |
| Sharma | Elife | Identification of EOMES-expressing spermatogonial stem cells and their regulation by PLZF. | 2019-05-31 | 10.7554/eLife.43352 | 6 | view | |
| Zhao | BMC Med Genomics | Single-cell RNA sequencing reveals the impact of chromosomal instability on glioblastoma cancer stem cells. | 2019-05-31 | 10.1186/s12920-019-0532-5 | 1 | view | |
| Du | Bioinformatics | deconvSeq: Deconvolution of Cell Mixture Distribution in Sequencing Data. | 2019-05-30 | 10.1093/bioinformatics/btz444 | 3 | view | |
| Stuart | Cell | Comprehensive Integration of Single-Cell Data. | 2019-05-30 | 10.1016/j.cell.2019.05.031 | 441 | view | |
| Prior | Development | Lgr5+ stem/progenitor cells reside at the apex of a heterogeneous embryonic hepatoblast pool. | 2019-05-29 | 10.1242/dev.174557 | view | ||
| Li | Development | Single cell expression analysis reveals anatomical and cell cycle-dependent transcriptional shifts during heart development. | 2019-05-29 | 10.1242/dev.173476 | 7 | view | |
| Shainer | Curr. Biol. | Agouti-Related Protein 2 Is a New Player in the Teleost Stress Response System. | 2019-05-29 | 10.1016/j.cub.2019.05.021 | 2 | view | |
| Tang | Stem Cell Reports | Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids. | 2019-05-29 | 10.1016/j.stemcr.2019.05.014 | view | ||
| Baek | Cell Rep | Molecular Logic of Spinocerebellar Tract Neuron Diversity and Connectivity. | 2019-05-28 | 10.1016/j.celrep.2019.04.113 | 3 | view | |
| Lukowski | Cell Rep | Single-Cell Transcriptional Profiling of Aortic Endothelium Identifies a Hierarchy from Endovascular Progenitors to Differentiated Cells. | 2019-05-28 | 10.1016/j.celrep.2019.04.102 | 16 | view | |
| Uniken Venema | Gastroenterology | Reply to: Letter to the Editor: Single-cell RNA Sequencing of T Cells in Crohn's Disease (GASTRO-D-18-02454). | 2019-05-28 | 10.1053/j.gastro.2019.05.045 | view | ||
| Tian | Nat. Methods | Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments. | 2019-05-27 | 10.1038/s41592-019-0425-8 | 33 | view | |
| Bhardwaj | Bioinformatics | snakePipes: facilitating flexible, scalable and integrative epigenomic analysis. | 2019-05-27 | 10.1093/bioinformatics/btz436 | 1 | view | |
| Hie | Cell Syst | Geometric Sketching Compactly Summarizes the Single-Cell Transcriptomic Landscape. | 2019-05-27 | 10.1016/j.cels.2019.05.003 | 11 | view | |
| Zhang | Bioinformatics | EnImpute: imputing dropout events in single cell RNA sequencing data via ensemble learning. | 2019-05-24 | 10.1093/bioinformatics/btz435 | view | ||
| Farber | Genome Med | Dissecting lung development and fibrosis at single-cell resolution. | 2019-05-24 | 10.1186/s13073-019-0645-7 | 3 | view | |
| Zhu | Sci Rep | Exploratory Gene Ontology Analysis with Interactive Visualization. | 2019-05-24 | 10.1038/s41598-019-42178-x | view | ||
| Del Fresno | Trends Immunol. | cDC1s: New Orchestrators of Tissue Innate Immunity. | 2019-05-24 | 10.1016/j.it.2019.05.002 | view | ||
| Krenkel | Cells | Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblasts in Liver Fibrosis. | 2019-05-24 | 10.3390/cells8050503 | 23 | view | |
| Tang | Nucleic Acids Res. | GEPIA2: an enhanced web server for large-scale expression profiling and interactive analysis. | 2019-05-22 | 10.1093/nar/gkz430 | 43 | view | |
| Bai | Bioinformatics | Statistical test of structured continuous trees based on discordance matrix. | 2019-05-22 | 10.1093/bioinformatics/btz425 | view | ||
| Feregrino | BMC Genomics | A single-cell transcriptomic atlas of the developing chicken limb. | 2019-05-22 | 10.1186/s12864-019-5802-2 | 4 | view | |
| Yuan | Cell Commun. Signal | Systematic expression analysis of ligand-receptor pairs reveals important cell-to-cell interactions inside glioma. | 2019-05-22 | 10.1186/s12964-019-0363-1 | view | ||
| Li | Development | The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution. | 2019-05-22 | 10.1242/dev.174888 | 5 | view | |
| Pizzolato | Proc. Natl. Acad. Sci. U.S.A. | Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of human TCRVδ1 and TCRVδ2 γδ T lymphocytes. | 2019-05-22 | 10.1073/pnas.1818488116 | 2 | view | |
| Stein-O'Brien | Cell Syst | Decomposing Cell Identity for Transfer Learning across Cellular Measurements, Platforms, Tissues, and Species. | 2019-05-22 | 10.1016/j.cels.2019.04.004 | view | ||
| Stopka | J. Theor. Biol. | A stochastic model of adult neurogenesis coupling cell cycle progression and differentiation. | 2019-05-22 | 10.1016/j.jtbi.2019.05.014 | view | ||
| Wang | Neuron | Thermoregulation via Temperature-Dependent PGD2 Production in Mouse Preoptic Area. | 2019-05-22 | 10.1016/j.neuron.2019.04.035 | 1 | view | |
| Su | Clin. Cancer Res. | Inferring the Evolution and Progression of Small-Cell Lung Cancer by Single-Cell Sequencing of Circulating Tumor Cells. | 2019-05-21 | 10.1158/1078-0432.CCR-18-3571 | 8 | view | |
| Sharon | Cell Rep | Wnt Signaling Separates the Progenitor and Endocrine Compartments during Pancreas Development. | 2019-05-21 | 10.1016/j.celrep.2019.04.083 | 25 | view | |
| Kupari | Cell Rep | An Atlas of Vagal Sensory Neurons and Their Molecular Specialization. | 2019-05-21 | 10.1016/j.celrep.2019.04.096 | 48 | view | |
| Duan | Nat Commun | Model-based understanding of single-cell CRISPR screening. | 2019-05-20 | 10.1038/s41467-019-10216-x | 1 | view | |
| Der | Nat. Immunol. | Tubular cell and keratinocyte single-cell transcriptomics applied to lupus nephritis reveal type I IFN and fibrosis relevant pathways. | 2019-05-20 | 10.1038/s41590-019-0386-1 | 35 | view | |
| Aztekin | Science | Identification of a regeneration-organizing cell in the Xenopus tail. | 2019-05-17 | 10.1126/science.aav9996 | 25 | view | |
| Zhou | Am J Sports Med | Single-Cell Profiles and Clinically Useful Properties of Human Mesenchymal Stem Cells of Adipose and Bone Marrow Origin. | 2019-05-17 | 10.1177/0363546519848678 | view | ||
| Keren-Shaul | Nat Protoc | MARS-seq2.0: an experimental and analytical pipeline for indexed sorting combined with single-cell RNA sequencing. | 2019-05-17 | 10.1038/s41596-019-0164-4 | view | ||
| Tawil | Semin. Thromb. Hemost. | Oncogenes and Clotting Factors: The Emerging Role of Tumor Cell Genome and Epigenome in Cancer-Associated Thrombosis. | 2019-05-16 | 10.1055/s-0039-1687891 | view | ||
| Drayman | Elife | HSV-1 single cell analysis reveals anti-viral and developmental programs activation in distinct sub-populations. | 2019-05-15 | 10.7554/eLife.46339 | view | ||
| Cheng | Nat Commun | Hydro-Seq enables contamination-free high-throughput single-cell RNA-sequencing for circulating tumor cells. | 2019-05-15 | 10.1038/s41467-019-10122-2 | 37 | view | |
| Ellis | Nature | Distinct modes of cell competition shape mammalian tissue morphogenesis. | 2019-05-15 | 10.1038/s41586-019-1199-y | view | ||
| Ayturk | Curr Osteoporos Rep | RNA-seq in Skeletal Biology. | 2019-05-15 | 10.1007/s11914-019-00517-x | 2 | view | |
| Zhou | Mol. Reprod. Dev. | Single-cell RNA-seq reveals distinct dynamic behavior of sex chromosomes during early human embryogenesis. | 2019-05-15 | 10.1002/mrd.23162 | 4 | view | |
| Russo | Neurobiol. Dis. | Transcriptase analysis of LRRK2 knock-out microglia cells reveals alterations of inflammatory- and oxidative stress-related pathways upon treatment with α-synuclein fibrils. | 2019-05-15 | 10.1016/j.nbd.2019.05.012 | view | ||
| Pan | Aging Cell | Perivascular adipose tissue-derived stromal cells contribute to vascular remodeling during aging. | 2019-05-14 | 10.1111/acel.12969 | 3 | view | |
| Shulse | Cell Rep | High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types. | 2019-05-14 | 10.1016/j.celrep.2019.04.054 | 37 | view | |
| Adelman | Cancer Discov | Aging Human Hematopoietic Stem Cells Manifest Profound Epigenetic Reprogramming of Enhancers That May Predispose to Leukemia. | 2019-05-13 | 10.1158/2159-8290.CD-18-1474 | 18 | view | |
| Kudo | Proc. Natl. Acad. Sci. U.S.A. | Low ambient humidity impairs barrier function and innate resistance against influenza infection. | 2019-05-13 | 10.1073/pnas.1902840116 | 10 | view | |
| Chan | Nature | Molecular recording of mammalian embryogenesis. | 2019-05-13 | 10.1038/s41586-019-1184-5 | 15 | view | |
| Suzuki | Biol. Reprod. | What has single-cell RNA-seq taught us about mammalian spermatogenesis? | 2019-05-11 | 10.1093/biolre/ioz088 | 4 | view | |
| Telley | Science | Temporal patterning of apical progenitors and their daughter neurons in the developing neocortex. | 2019-05-10 | 10.1126/science.aav2522 | view | ||
| Krenkel | Gut | Myeloid cells in liver and bone marrow acquire a functionally distinct inflammatory phenotype during obesity-related steatohepatitis. | 2019-05-10 | 10.1136/gutjnl-2019-318382 | 9 | view | |
| Moreno-Villanueva | Int J Mol Sci | Single-Cell RNA-Sequencing Identifies Activation of TP53 and STAT1 Pathways in Human T Lymphocyte Subpopulations in Response to Ex Vivo Radiation Exposure. | 2019-05-10 | 10.3390/ijms20092316 | view | ||
| Karlsen | Cartilage | Single-Cell RNA Sequencing of In Vitro Expanded Chondrocytes: MSC-Like Cells With No Evidence of Distinct Subsets. | 2019-05-09 | 10.1177/1947603519847746 | view | ||
| Kim | Proc. Natl. Acad. Sci. U.S.A. | Generation, transcriptome profiling, and functional validation of cone-rich human retinal organoids. | 2019-05-09 | 10.1073/pnas.1901572116 | 5 | view | |
| Melsted | Bioinformatics | The Barcode, UMI, Set format and BUStools. | 2019-05-09 | 10.1093/bioinformatics/btz279 | 11 | view | |
| Baryawno | Cell | A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia. | 2019-05-09 | 10.1016/j.cell.2019.04.040 | 19 | view | |
| Ye | BMC Genomics | scNPF: an integrative framework assisted by network propagation and network fusion for preprocessing of single-cell RNA-seq data. | 2019-05-08 | 10.1186/s12864-019-5747-5 | 1 | view | |
| Russell | J. Virol. | Single-cell virus sequencing of influenza infections that trigger innate immunity. | 2019-05-08 | 10.1128/JVI.00500-19 | 24 | view | |
| Kuo | Sci Transl Med | HBEGF+ macrophages in rheumatoid arthritis induce fibroblast invasiveness. | 2019-05-08 | 10.1126/scitranslmed.aau8587 | view | ||
| Ma | Proc. Natl. Acad. Sci. U.S.A. | Prosurvival kinase PIM2 is a therapeutic target for eradication of chronic myeloid leukemia stem cells. | 2019-05-08 | 10.1073/pnas.1903550116 | view | ||
| Clark | Neuron | Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification. | 2019-05-08 | 10.1016/j.neuron.2019.04.010 | view | ||
| Zhang | Cell Rep | Dissecting the Single-Cell Transcriptome Network Underlying Gastric Premalignant Lesions and Early Gastric Cancer. | 2019-05-07 | 10.1016/j.celrep.2019.04.052 | 22 | view | |
| Voigt | Exp. Eye Res. | Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing. | 2019-05-07 | 10.1016/j.exer.2019.05.001 | 25 | view | |
| Planas-Paz | Cell Stem Cell | YAP, but Not RSPO-LGR4/5, Signaling in Biliary Epithelial Cells Promotes a Ductular Reaction in Response to Liver Injury. | 2019-05-07 | 10.1016/j.stem.2019.04.005 | 24 | view | |
| Peng | Genome Biol. | SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq data. | 2019-05-06 | 10.1186/s13059-019-1681-8 | 15 | view | |
| Newman | Nat. Biotechnol. | Determining cell type abundance and expression from bulk tissues with digital cytometry. | 2019-05-06 | 10.1038/s41587-019-0114-2 | 55 | view | |
| Hie | Nat. Biotechnol. | Efficient integration of heterogeneous single-cell transcriptomes using Scanorama. | 2019-05-06 | 10.1038/s41587-019-0113-3 | 47 | view | |
| Van Hove | Nat. Neurosci. | A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment. | 2019-05-06 | 10.1038/s41593-019-0393-4 | view | ||
| Zhang | Nat. Immunol. | Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry. | 2019-05-06 | 10.1038/s41590-019-0378-1 | 66 | view | |
| Rodriguez-Villalon | Curr. Opin. Plant Biol. | Single cell RNA sequencing and its promise in reconstructing plant vascular cell lineages. | 2019-05-06 | 10.1016/j.pbi.2019.04.002 | view | ||
| Spallanzani | Sci Immunol | Distinct immunocyte-promoting and adipocyte-generating stromal components coordinate adipose tissue immune and metabolic tenors. | 2019-05-03 | 10.1126/sciimmunol.aaw3658 | view | ||
| Chen | Adv Sci (Weinh) | Multiplexed, Sequential Secretion Analysis of the Same Single Cells Reveals Distinct Effector Response Dynamics Dependent on the Initial Basal State. | 2019-05-03 | 10.1002/advs.201801361 | view | ||
| Poon | Oncotarget | Differential microglia and macrophage profiles in human IDH-mutant and -wild type glioblastoma. | 2019-05-03 | 10.18632/oncotarget.26863 | 10 | view | |
| Wong | Arterioscler. Thromb. Vasc. Biol. | Genetic Insights Into Smooth Muscle Cell Contributions to Coronary Artery Disease. | 2019-05-02 | 10.1161/ATVBAHA.119.312141 | view | ||
| Wang | BMC Bioinformatics | scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data. | 2019-05-02 | 10.1186/s12859-019-2797-2 | 2 | view | |
| Bonaguidi | Cell Stem Cell | Evaluation of Weng et al.: Leveraging Cell Type Correlations and Single-Cell Bioinformatics to Identify Progenitor Diversity and Lineage. | 2019-05-02 | 10.1016/j.stem.2019.04.011 | view | ||
| Fang | J. Clin. Endocrinol. Metab. | Insights Into Local Orbital Immunity: Evidence for the Involvement of the Th17 Cell Pathway in Thyroid-Associated Ophthalmopathy. | 2019-05-01 | 10.1210/jc.2018-01626 | 3 | view | |
| Vladoiu | Nature | Childhood cerebellar tumours mirror conserved fetal transcriptional programs. | 2019-05-01 | 10.1038/s41586-019-1158-7 | view | ||
| Gogolewski | J. Comput. Biol. | Truncated Robust Principal Component Analysis and Noise Reduction for Single Cell RNA Sequencing Data. | 2019-05-01 | 10.1089/cmb.2018.0255 | 1 | view | |
| Zhao | Gigascience | Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood. | 2019-05-01 | 10.1093/gigascience/giz047 | view | ||
| Salomonis | Methods Mol. Biol. | Investigating Cell Fate Decisions with ICGS Analysis of Single Cells. | 2019-05-01 | 10.1007/978-1-4939-9224-9_12 | view | ||
| Sagar | Methods Mol. Biol. | Lineage Inference and Stem Cell Identity Prediction Using Single-Cell RNA-Sequencing Data. | 2019-05-01 | 10.1007/978-1-4939-9224-9_13 | view | ||
| Lamarche | Can J Kidney Health Dis | Infectious Disease Risk in Dialysis Patients: A Transdisciplinary Approach. | 2019-05-01 | 10.1177/2054358119839080 | view | ||
| Want | Oncoimmunology | Neoantigens retention in patient derived xenograft models mediates autologous T cells activation in ovarian cancer. | 2019-05-01 | 10.1080/2162402X.2019.1586042 | 2 | view | |
| Penter | Oncoimmunology | Localization-associated immune phenotypes of clonally expanded tumor-infiltrating T cells and distribution of their target antigens in rectal cancer. | 2019-05-01 | 10.1080/2162402X.2019.1586409 | 2 | view | |
| Curato | Front Immunol | DC Respond to Cognate T Cell Interaction in the Antigen-Challenged Lymph Node. | 2019-05-01 | 10.3389/fimmu.2019.00863 | view | ||
| Wang | BMC Bioinformatics | Generalized gene co-expression analysis via subspace clustering using low-rank representation. | 2019-05-01 | 10.1186/s12859-019-2733-5 | 1 | view | |
| Chen | BMC Bioinformatics | VPAC: Variational projection for accurate clustering of single-cell transcriptomic data. | 2019-05-01 | 10.1186/s12859-019-2742-4 | 1 | view | |
| Pepe-Mooney | Cell Stem Cell | Single-Cell Analysis of the Liver Epithelium Reveals Dynamic Heterogeneity and an Essential Role for YAP in Homeostasis and Regeneration. | 2019-05-01 | 10.1016/j.stem.2019.04.004 | 43 | view | |
| Luo | Mediators Inflamm. | Epigenetic Regulation of IL-17-Induced Chemokines in Lung Epithelial Cells. | 2019-05-01 | 10.1155/2019/9050965 | 1 | view | |
| Tang | Front Genet | High-Order Correlation Integration for Single-Cell or Bulk RNA-seq Data Analysis. | 2019-05-01 | 10.3389/fgene.2019.00371 | 3 | view | |
| Kim | PLoS ONE | Alternative polyadenylation of single cells delineates cell types and serves as a prognostic marker in early stage breast cancer. | 2019-05-01 | 10.1371/journal.pone.0217196 | view | ||
| Shin | Sci Adv | Multiplexed single-cell RNA-seq via transient barcoding for simultaneous expression profiling of various drug perturbations. | 2019-05-01 | 10.1126/sciadv.aav2249 | 3 | view | |
| Wu | Front Genet | NormExpression: An R Package to Normalize Gene Expression Data Using Evaluated Methods. | 2019-05-01 | 10.3389/fgene.2019.00400 | 2 | view | |
| Sharma | Mol Cell Oncol | Tracking tumor evolution one-cell-at-a-time. | 2019-05-01 | 10.1080/23723556.2019.1590089 | 3 | view | |
| Liu | Biomicrofluidics | Whole genome amplification of single epithelial cells dissociated from snap-frozen tissue samples in microfluidic platform. | 2019-05-01 | 10.1063/1.5090235 | view | ||
| Anstine | J Cancer Metastasis Treat | A new view of the mammary epithelial hierarchy and its implications for breast cancer initiation and metastasis. | 2019-05-01 | 10.20517/2394-4722.2019.24 | view | ||
| Lin | Bioinformatics | Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data. | 2019-04-30 | 10.1093/bioinformatics/btz296 | 6 | view | |
| Johnson | Bioinformatics | LAmbDA: Label Ambiguous Domain Adaptation Dataset Integration Reduces Batch Effects and Improves Subtype Detection. | 2019-04-30 | 10.1093/bioinformatics/btz295 | 3 | view | |
| Lossos | Cancer Discov | Mechanisms of lymphoma clearance induced by high-dose alkylating agents. | 2019-04-30 | 10.1158/2159-8290.CD-18-1393 | 7 | view | |
| Xue | Cell Rep | A 3D Atlas of Hematopoietic Stem and Progenitor Cell Expansion by Multi-dimensional RNA-Seq Analysis. | 2019-04-30 | 10.1016/j.celrep.2019.04.030 | 2 | view | |
| Song | Cancer Med | Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq. | 2019-04-29 | 10.1002/cam4.2113 | 3 | view | |
| Merrick | Science | Identification of a mesenchymal progenitor cell hierarchy in adipose tissue. | 2019-04-26 | 10.1126/science.aav2501 | 9 | view | |
| Lin | Proc. Natl. Acad. Sci. U.S.A. | scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets. | 2019-04-26 | 10.1073/pnas.1820006116 | view | ||
| Neri | Nat Commun | Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis. | 2019-04-26 | 10.1038/s41467-019-09459-5 | 10 | view | |
| Hou | Bioinformatics | scMatch: a single-cell gene expression profile annotation tool using reference datasets. | 2019-04-26 | 10.1093/bioinformatics/btz292 | 19 | view | |
| Vu | Bioinformatics | Cell-level somatic mutation detection from single-cell RNA-sequencing. | 2019-04-26 | 10.1093/bioinformatics/btz288 | 2 | view | |
| Ramazzotti | BMC Bioinformatics | Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data. | 2019-04-25 | 10.1186/s12859-019-2795-4 | view | ||
| Liu | J Transl Med | Journal of Translational Medicine advances in Translational Genomics and Genetics Era. | 2019-04-25 | 10.1186/s12967-019-1874-7 | view | ||
| Sarntivijai | BMC Bioinformatics | Cells in ExperimentaL Life Sciences (CELLS-2018): capturing the knowledge of normal and diseased cells with ontologies. | 2019-04-25 | 10.1186/s12859-019-2721-9 | view | ||
| Ludwig | Eur. J. Immunol. | High-throughput single-cell sequencing of paired TCRα and TCRβ genes for the direct expression-cloning and functional analysis of murine T cell receptors. | 2019-04-24 | 10.1002/eji.201848030 | view | ||
| Ayyaz | Nature | Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell. | 2019-04-24 | 10.1038/s41586-019-1154-y | 10 | view | |
| Cole | Cell Syst | Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq. | 2019-04-24 | 10.1016/j.cels.2019.03.010 | 32 | view | |
| Cosacak | Cell Rep | Single-Cell Transcriptomics Analyses of Neural Stem Cell Heterogeneity and Contextual Plasticity in a Zebrafish Brain Model of Amyloid Toxicity. | 2019-04-23 | 10.1016/j.celrep.2019.03.090 | 6 | view | |
| Sekula | Biometrics | Detection of differentially expressed genes in discrete single-cell RNA sequencing data using a hurdle model with correlated random effects. | 2019-04-22 | 10.1111/biom.13074 | 3 | view | |
| Gaydosik | Clin. Cancer Res. | Single-cell lymphocyte heterogeneity in advanced Cutaneous T-Cell Lymphoma skin tumors. | 2019-04-22 | 10.1158/1078-0432.CCR-19-0148 | view | ||
| Miao | Cell | Adaptive Immune Resistance Emerges from Tumor-Initiating Stem Cells. | 2019-04-22 | 10.1016/j.cell.2019.03.025 | 33 | view | |
| Lu | Int J Mol Sci | ChimeraMiner: An Improved Chimeric Read Detection Pipeline and Its Application in Single Cell Sequencing. | 2019-04-21 | 10.3390/ijms20081953 | view | ||
| Salomon | Lab Chip | Droplet-based single cell RNAseq tools: a practical guide. | 2019-04-18 | 10.1039/c8lc01239c | 2 | view | |
| Zhang | Brief. Bioinformatics | Single-cell transcriptome-based multilayer network biomarker for predicting prognosis and therapeutic response of gliomas. | 2019-04-18 | 10.1093/bib/bbz040 | 5 | view | |
| Zhang | Mol Plant | A Single-Cell RNA Sequencing Profiles the Developmental Landscape of Arabidopsis Root. | 2019-04-17 | 10.1016/j.molp.2019.04.004 | view | ||
| Brioschi | Trends Neurosci. | Fifty Shades of Microglia. | 2019-04-17 | 10.1016/j.tins.2019.03.010 | view | ||
| Li | JCI Insight | Single cell transcriptomics based-MacSpectrum reveals novel macrophage activation signatures in diseases. | 2019-04-16 | 10.1172/jci.insight.126453 | view | ||
| Huang | Proc. Natl. Acad. Sci. U.S.A. | Select sequencing of clonally expanded CD8+ T cells reveals limits to clonal expansion. | 2019-04-16 | 10.1073/pnas.1902649116 | view | ||
| Genga | Cell Rep | Single-Cell RNA-Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Early Human Endoderm Development. | 2019-04-16 | 10.1016/j.celrep.2019.03.076 | 22 | view | |
| Wester | Neuron | Neocortical Projection Neurons Instruct Inhibitory Interneuron Circuit Development in a Lineage-Dependent Manner. | 2019-04-16 | 10.1016/j.neuron.2019.03.036 | 9 | view | |
| Heng | Proc. Natl. Acad. Sci. U.S.A. | Hypoxia tolerance in the Norrin-deficient retina and the chronically hypoxic brain studied at single-cell resolution. | 2019-04-15 | 10.1073/pnas.1821122116 | 8 | view | |
| Makino | Sci Rep | Single cell RNA-sequencing identified Dec2 as a suppressive factor for spermatogonial differentiation by inhibiting Sohlh1 expression. | 2019-04-15 | 10.1038/s41598-019-42578-z | 2 | view | |
| Salamanca | Glia | MIC-MAC: An automated pipeline for high-throughput characterization and classification of three-dimensional microglia morphologies in mouse and human postmortem brain samples. | 2019-04-14 | 10.1002/glia.23623 | 3 | view | |
| Zhou | Am. J. Respir. Cell Mol. Biol. | Beyond Fibroblast Heterogeneity: What Single-Cell RNA-Seq Tells Us. | 2019-04-12 | 10.1165/rcmb.2019-0120ED | view | ||
| Dell'Orso | Development | Single cell analysis of adult mouse skeletal muscle stem cells in homeostatic and regenerative conditions. | 2019-04-11 | 10.1242/dev.174177 | view | ||
| Miermont | Development | The fate of cells undergoing spontaneous DNA damage during development. | 2019-04-11 | 10.1242/dev.174268 | 3 | view | |
| Du | Gastroenterology | Single-cell RNA Sequencing of T Cells in Crohn's Disease. | 2019-04-11 | 10.1053/j.gastro.2018.12.049 | view | ||
| Natarajan | Genome Biol. | Comparative analysis of sequencing technologies for single-cell transcriptomics. | 2019-04-09 | 10.1186/s13059-019-1676-5 | view | ||
| Sun | Nat Commun | A Bayesian mixture model for clustering droplet-based single-cell transcriptomic data from population studies. | 2019-04-09 | 10.1038/s41467-019-09639-3 | 9 | view | |
| Yue | Aging Cell | Cell-type-specific role of lamin-B1 in thymus development and its inflammation-driven reduction in thymus aging. | 2019-04-09 | 10.1111/acel.12952 | 5 | view | |
| Kulkarni | Curr. Opin. Biotechnol. | Beyond bulk: a review of single cell transcriptomics methodologies and applications. | 2019-04-09 | 10.1016/j.copbio.2019.03.001 | 1 | view | |
| Sekiguchi | Curr Protoc Cell Biol | Preparation of Cells from Embryonic Organs for Single-Cell RNA Sequencing. | 2019-04-08 | 10.1002/cpcb.86 | 1 | view | |
| Wen | J. Clin. Invest. | Single-cell RNA sequencing identifies inflammatory tissue T cells in eosinophilic esophagitis. | 2019-04-08 | 10.1172/JCI125917 | 14 | view | |
| Eckalbar | J. Clin. Invest. | Singling out Th2 cells in eosinophilic esophagitis. | 2019-04-08 | 10.1172/JCI128479 | 1 | view | |
| Skinnider | Nat. Methods | Evaluating measures of association for single-cell transcriptomics. | 2019-04-08 | 10.1038/s41592-019-0372-4 | 17 | view | |
| Nelms | Science | Defining the developmental program leading to meiosis in maize. | 2019-04-05 | 10.1126/science.aav6428 | 20 | view | |
| Kania | Nat Rev Rheumatol | Involvement of the myeloid cell compartment in fibrogenesis and systemic sclerosis. | 2019-04-05 | 10.1038/s41584-019-0212-z | view | ||
| Sun | BMC Syst Biol | A fast and efficient count-based matrix factorization method for detecting cell types from single-cell RNAseq data. | 2019-04-05 | 10.1186/s12918-019-0699-6 | 5 | view | |
| Zilionis | Immunity | Single-Cell Transcriptomics of Human and Mouse Lung Cancers Reveals Conserved Myeloid Populations across Individuals and Species. | 2019-04-05 | 10.1016/j.immuni.2019.03.009 | 89 | view | |
| Zimmerman | J. Am. Soc. Nephrol. | Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species. | 2019-04-04 | 10.1681/ASN.2018090931 | 3 | view | |
| Clatworthy | J. Am. Soc. Nephrol. | How to Find a Resident Kidney Macrophage: the Single-Cell Sequencing Solution. | 2019-04-04 | 10.1681/ASN.2019030245 | view | ||
| Liu | Bioinformatics | scRNAss: a single-cell RNA-seq assembler via imputing dropouts and combing junctions. | 2019-04-04 | 10.1093/bioinformatics/btz240 | view | ||
| An | BMC Genomics | TSEE: an elastic embedding method to visualize the dynamic gene expression patterns of time series single-cell RNA sequencing data. | 2019-04-04 | 10.1186/s12864-019-5477-8 | view | ||
| Hinterndorfer | Curr. Opin. Genet. Dev. | Functional-genetic approaches to understanding drug response and resistance. | 2019-04-02 | 10.1016/j.gde.2019.03.003 | view | ||
| Rinschen | Kidney Int. | A knowledge-guided kidney cell census-reconciling bulk omics with cellular heterogeneity? | 2019-04-01 | 10.1016/j.kint.2018.12.016 | view | ||
| Ben-Moshe | Nat Rev Gastroenterol Hepatol | Spatial heterogeneity in the mammalian liver. | 2019-04-01 | 10.1038/s41575-019-0134-x | 18 | view | |
| Fischer | Nat. Biotechnol. | Inferring population dynamics from single-cell RNA-sequencing time series data. | 2019-04-01 | 10.1038/s41587-019-0088-0 | 13 | view | |
| Yoo | Front Neurosci | Tanycyte-Independent Control of Hypothalamic Leptin Signaling. | 2019-04-01 | 10.3389/fnins.2019.00240 | view | ||
| Rodriguez-Zhurbenko | Front Immunol | Human B-1 Cells and B-1 Cell Antibodies Change With Advancing Age. | 2019-04-01 | 10.3389/fimmu.2019.00483 | 5 | view | |
| Oulhen | Methods Cell Biol. | Identifying gene expression from single cells to single genes. | 2019-04-01 | 10.1016/bs.mcb.2018.11.018 | 1 | view | |
| Wick | Epilepsy Curr | Seizing Sequencing Data to Consider Cell and Circuit Complexity. | 2019-04-01 | 10.1177/1535759719835658 | 1 | view | |
| Sasagawa | Adv. Exp. Med. Biol. | Strategies for Converting RNA to Amplifiable cDNA for Single-Cell RNA Sequencing Methods. | 2019-04-01 | 10.1007/978-981-13-6037-4_1 | 1 | view | |
| Kashima | Adv. Exp. Med. Biol. | An Informative Approach to Single-Cell Sequencing Analysis. | 2019-04-01 | 10.1007/978-981-13-6037-4_6 | view | ||
| Malone | Transplantation | Single Cell Transcriptomics and Solid Organ Transplantation. | 2019-04-01 | 10.1097/TP.0000000000002725 | 2 | view | |
| Huss | Front Cell Dev Biol | Avian Primordial Germ Cells Contribute to and Interact With the Extracellular Matrix During Early Migration. | 2019-04-01 | 10.3389/fcell.2019.00035 | view | ||
| Hamanaka | Hum. Mol. Genet. | MYRF haploinsufficiency causes 46,XY and 46,XX disorders of sex development: bioinformatics consideration. | 2019-04-01 | 10.1093/hmg/ddz066 | view | ||
| Ferrall-Fairbanks | JCO Clin Cancer Inform | Leveraging Single-Cell RNA Sequencing Experiments to Model Intratumor Heterogeneity. | 2019-04-01 | 10.1200/CCI.18.00074 | view | ||
| Sarkar | PLoS Genet. | Discovery and characterization of variance QTLs in human induced pluripotent stem cells. | 2019-04-01 | 10.1371/journal.pgen.1008045 | 16 | view | |
| Birbrair | Adv. Exp. Med. Biol. | Stem Cells Heterogeneity. | 2019-04-01 | 10.1007/978-3-030-11096-3_1 | 4 | view | |
| Peters | PLoS ONE | Single cell RNA sequencing reveals regional heterogeneity of hepatobiliary innate lymphoid cells in a tissue-enriched fashion. | 2019-04-01 | 10.1371/journal.pone.0215481 | 2 | view | |
| Kong | PLoS ONE | Insights from deconvolution of cell subtype proportions enhance the interpretation of functional genomic data. | 2019-04-01 | 10.1371/journal.pone.0215987 | 1 | view | |
| Chen | Front Genet | Single-Cell RNA-Seq Technologies and Related Computational Data Analysis. | 2019-04-01 | 10.3389/fgene.2019.00317 | 60 | view | |
| Mamanova | Methods Mol. Biol. | Setting Up a Single-Cell Genomic Laboratory. | 2019-04-01 | 10.1007/978-1-4939-9240-9_1 | view | ||
| Vieira Braga | Methods Mol. Biol. | Tissue Handling and Dissociation for Single-Cell RNA-Seq. | 2019-04-01 | 10.1007/978-1-4939-9240-9_2 | view | ||
| Picelli | Methods Mol. Biol. | Full-Length Single-Cell RNA Sequencing with Smart-seq2. | 2019-04-01 | 10.1007/978-1-4939-9240-9_3 | view | ||
| Yanai | Methods Mol. Biol. | CEL-Seq2-Single-Cell RNA Sequencing by Multiplexed Linear Amplification. | 2019-04-01 | 10.1007/978-1-4939-9240-9_4 | 1 | view | |
| Sheng | Methods Mol. Biol. | Single-Cell RNA-Seq by Multiple Annealing and Tailing-Based Quantitative Single-Cell RNA-Seq (MATQ-Seq). | 2019-04-01 | 10.1007/978-1-4939-9240-9_5 | 1 | view | |
| Bageritz | Methods Mol. Biol. | Single-Cell RNA Sequencing with Drop-Seq. | 2019-04-01 | 10.1007/978-1-4939-9240-9_6 | 2 | view | |
| Aicher | Methods Mol. Biol. | Seq-Well: A Sample-Efficient, Portable Picowell Platform for Massively Parallel Single-Cell RNA Sequencing. | 2019-04-01 | 10.1007/978-1-4939-9240-9_8 | 4 | view | |
| Natarajan | Methods Mol. Biol. | Single-Cell Tagged Reverse Transcription (STRT-Seq). | 2019-04-01 | 10.1007/978-1-4939-9240-9_9 | view | ||
| Khan | Methods Mol. Biol. | Single-Cell RNA-Sequencing of Peripheral Blood Mononuclear Cells with ddSEQ. | 2019-04-01 | 10.1007/978-1-4939-9240-9_10 | 3 | view | |
| Li | Methods Mol. Biol. | Targeted TCR Amplification from Single-Cell cDNA Libraries. | 2019-04-01 | 10.1007/978-1-4939-9240-9_13 | view | ||
| Henriksson | Methods Mol. Biol. | CRISPR Screening in Single Cells. | 2019-04-01 | 10.1007/978-1-4939-9240-9_23 | view | ||
| Alessandrì | Methods Mol. Biol. | Differential Expression Analysis in Single-Cell Transcriptomics. | 2019-04-01 | 10.1007/978-1-4939-9240-9_25 | view | ||
| Baßler | Methods Mol. Biol. | A Bioinformatic Toolkit for Single-Cell mRNA Analysis. | 2019-04-01 | 10.1007/978-1-4939-9240-9_26 | view | ||
| Wang | Chin. J. Cancer Res. | Extensive exploration of T cell heterogeneity in cancers by single cell sequencing. | 2019-04-01 | 10.21147/j.issn.1000-9604.2019.02.15 | view | ||
| Rodriques | Science | Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution. | 2019-03-29 | 10.1126/science.aaw1219 | view | ||
| Wang | Nucleic Acids Res. | Cell lineage and communication network inference via optimization for single-cell transcriptomics. | 2019-03-29 | 10.1093/nar/gkz204 | 7 | view | |
| Biočanin | Lab Chip | Simplified Drop-seq workflow with minimized bead loss using a bead capture and processing microfluidic chip. | 2019-03-28 | 10.1039/c9lc00014c | 3 | view | |
| Jean-Baptiste | Plant Cell | Dynamics of gene expression in single root cells of A. thaliana. | 2019-03-28 | 10.1105/tpc.18.00785 | view | ||
| Everman | J. Allergy Clin. Immunol. | Functional genomics of CDHR3 confirms its role in HRV-C infection and childhood asthma exacerbations. | 2019-03-28 | 10.1016/j.jaci.2019.01.052 | 5 | view | |
| Wolock | Cell Syst | Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data. | 2019-03-28 | 10.1016/j.cels.2018.11.005 | view | ||
| Srivastava | Genome Biol. | Alevin efficiently estimates accurate gene abundances from dscRNA-seq data. | 2019-03-27 | 10.1186/s13059-019-1670-y | 9 | view | |
| Wang | Cell Stem Cell | A Subset of TREM2+ Dermal Macrophages Secretes Oncostatin M to Maintain Hair Follicle Stem Cell Quiescence and Inhibit Hair Growth. | 2019-03-27 | 10.1016/j.stem.2019.01.011 | view | ||
| Farbehi | Elife | Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury. | 2019-03-26 | 10.7554/eLife.43882 | 14 | view | |
| Riemondy | JCI Insight | Single cell RNA sequencing identifies TGFβ as a key regenerative cue following LPS-induced lung injury. | 2019-03-26 | 10.1172/jci.insight.123637 | view | ||
| Thyme | Cell | Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions. | 2019-03-26 | 10.1016/j.cell.2019.01.048 | 21 | view | |
| McGinnis | Cell Syst | DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors. | 2019-03-26 | 10.1016/j.cels.2019.03.003 | 71 | view | |
| Li | IEEE/ACM Trans Comput Biol Bioinform | Single-Cell RNA Sequencing Data Interpretation by Evolutionary Multiobjective Clustering. | 2019-03-25 | 10.1109/TCBB.2019.2906601 | 2 | view | |
| Denyer | Dev. Cell | Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing. | 2019-03-25 | 10.1016/j.devcel.2019.02.022 | 49 | view | |
| Arck | J. Reprod. Immunol. | When 3 Rs meet a forth R: Replacement, reduction and refinement of animals in research on reproduction. | 2019-03-25 | 10.1016/j.jri.2019.03.004 | 5 | view | |
| Weng | Cell Stem Cell | Single-Cell Transcriptomics Uncovers Glial Progenitor Diversity and Cell Fate Determinants during Development and Gliomagenesis. | 2019-03-23 | 10.1016/j.stem.2019.03.006 | view | ||
| Lun | Genome Biol. | EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data. | 2019-03-22 | 10.1186/s13059-019-1662-y | 11 | view | |
| Ottersbach | Biochem. Soc. Trans. | Endothelial-to-haematopoietic transition: an update on the process of making blood. | 2019-03-22 | 10.1042/BST20180320 | 2 | view | |
| Giordani | Mol. Cell | High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations. | 2019-03-22 | 10.1016/j.molcel.2019.02.026 | 35 | view | |
| Setty | Nat. Biotechnol. | Characterization of cell fate probabilities in single-cell data with Palantir. | 2019-03-21 | 10.1038/s41587-019-0068-4 | 25 | view | |
| Biendarra-Tiegs | Stem Cells Dev. | Single-cell RNA-seq and optical electrophysiology of human induced pluripotent stem cell-derived cardiomyocytes reveal discordance between cardiac subtype-associated gene expression patterns and electrophysiological phenotypes. | 2019-03-20 | 10.1089/scd.2019.0030 | view | ||
| Grive | PLoS Genet. | Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing. | 2019-03-20 | 10.1371/journal.pgen.1007810 | 16 | view | |
| Singh | Sci Rep | In situ 10-cell RNA sequencing in tissue and tumor biopsy samples. | 2019-03-20 | 10.1038/s41598-019-41235-9 | 2 | view | |
| Mizuhashi | J. Bone Miner. Res. | Growth plate borderline chondrocytes behave as transient mesenchymal precursor cells. | 2019-03-19 | 10.1002/jbmr.3719 | 8 | view | |
| Wolf | Genome Biol. | PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells. | 2019-03-19 | 10.1186/s13059-019-1663-x | 87 | view | |
| Antolović | Development | Transition state dynamics during a stochastic fate choice. | 2019-03-19 | 10.1242/dev.173740 | 8 | view | |
| Ernst | Nat Commun | Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis. | 2019-03-19 | 10.1038/s41467-019-09182-1 | 20 | view | |
| Ronning | Sci Rep | Molecular profiling of resident and infiltrating mononuclear phagocytes during rapid adult retinal degeneration using single-cell RNA sequencing. | 2019-03-19 | 10.1038/s41598-019-41141-0 | 4 | view | |
| Yap | Cell Rep | In Vivo Generation of Post-infarct Human Cardiac Muscle by Laminin-Promoted Cardiovascular Progenitors. | 2019-03-19 | 10.1016/j.celrep.2019.02.083 | 5 | view | |
| Stévant | Cell Rep | Dissecting Cell Lineage Specification and Sex Fate Determination in Gonadal Somatic Cells Using Single-Cell Transcriptomics. | 2019-03-19 | 10.1016/j.celrep.2019.02.069 | view | ||
| Giandomenico | Nat. Neurosci. | Cerebral organoids at the air-liquid interface generate diverse nerve tracts with functional output. | 2019-03-18 | 10.1038/s41593-019-0350-2 | 29 | view | |
| Frishberg | Nat. Methods | Cell composition analysis of bulk genomics using single-cell data. | 2019-03-18 | 10.1038/s41592-019-0355-5 | 24 | view | |
| Deng | Nat. Methods | Scalable analysis of cell-type composition from single-cell transcriptomics using deep recurrent learning. | 2019-03-18 | 10.1038/s41592-019-0353-7 | 13 | view | |
| Okada | Biochem. Biophys. Res. Commun. | Transcriptionally distinct mesenchymal stem/stromal cells circulate in fetus. | 2019-03-16 | 10.1016/j.bbrc.2019.03.033 | view | ||
| Kubo | Nucleic Acids Res. | Single-cell transcriptome analysis of Physcomitrella leaf cells during reprogramming using microcapillary manipulation. | 2019-03-15 | 10.1093/nar/gkz181 | 7 | view | |
| Shin | Clin Lymphoma Myeloma Leuk | Characteristics of Waldenström Macroglobulinemia in Korean Patients According to Mutational Status of MYD88 and CXCR4: Analysis Using Ultra-Deep Sequencing. | 2019-03-15 | 10.1016/j.clml.2019.03.009 | 2 | view | |
| Guo | Development | Defining developmental diversification of diencephalon neurons through single-cell gene expression profiling. | 2019-03-14 | 10.1242/dev.174284 | view | ||
| Paolillo | Clin. Chem. | Single-Cell Genomics. | 2019-03-14 | 10.1373/clinchem.2017.283895 | 6 | view | |
| Chen | Sci Rep | Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model. | 2019-03-14 | 10.1038/s41598-019-40809-x | 5 | view | |
| Mucenski | Sci Rep | Single cell RNA-seq study of wild type and Hox9,10,11 mutant developing uterus. | 2019-03-14 | 10.1038/s41598-019-40923-w | 6 | view | |
| Dai | Nucleic Acids Res. | Cell-specific network constructed by single-cell RNA sequencing data. | 2019-03-13 | 10.1093/nar/gkz172 | view | ||
| Durif | Bioinformatics | Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis. | 2019-03-13 | 10.1093/bioinformatics/btz177 | 12 | view | |
| O'Sullivan | J. Am. Soc. Nephrol. | Complementary Roles for Single-Nucleus and Single-Cell RNA Sequencing in Kidney Disease Research. | 2019-03-13 | 10.1681/ASN.2019020112 | view | ||
| Francesconi | Elife | Single cell RNA-seq identifies the origins of heterogeneity in efficient cell transdifferentiation and reprogramming. | 2019-03-12 | 10.7554/eLife.41627 | 9 | view | |
| Zachs | Nat Commun | Noninvasive ultrasound stimulation of the spleen to treat inflammatory arthritis. | 2019-03-12 | 10.1038/s41467-019-08721-0 | view | ||
| Veerman | Cell Rep | Single-Cell Analysis Reveals Heterogeneity of High Endothelial Venules and Different Regulation of Genes Controlling Lymphocyte Entry to Lymph Nodes. | 2019-03-12 | 10.1016/j.celrep.2019.02.042 | 9 | view | |
| Ranum | Cell Rep | Insights into the Biology of Hearing and Deafness Revealed by Single-Cell RNA Sequencing. | 2019-03-12 | 10.1016/j.celrep.2019.02.053 | view | ||
| Wainer Katsir | BMC Genomics | Human genes escaping X-inactivation revealed by single cell expression data. | 2019-03-12 | 10.1186/s12864-019-5507-6 | view | ||
| McCann | J. Clin. Invest. | Endothelial miR-30c suppresses tumor growth via inhibition of TGF-β-induced Serpine1. | 2019-03-11 | 10.1172/JCI123106 | 11 | view | |
| Mickelsen | Nat. Neurosci. | Single-cell transcriptomic analysis of the lateral hypothalamic area reveals molecularly distinct populations of inhibitory and excitatory neurons. | 2019-03-11 | 10.1038/s41593-019-0349-8 | 30 | view | |
| Klaus | Nat. Med. | Altered neuronal migratory trajectories in human cerebral organoids derived from individuals with neuronal heterotopia. | 2019-03-11 | 10.1038/s41591-019-0371-0 | 14 | view | |
| Peyser | Am. J. Respir. Cell Mol. Biol. | Defining the Activated Fibroblast Population in Lung Fibrosis Using Single Cell Sequencing. | 2019-03-08 | 10.1165/rcmb.2018-0313OC | 12 | view | |
| Song | Analyst | Single cell transcriptomics: moving towards multi-omics. | 2019-03-08 | 10.1039/c8an01852a | view | ||
| Delile | Development | Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing mouse spinal cord. | 2019-03-07 | 10.1242/dev.173807 | 32 | view | |
| Fu | J. Am. Soc. Nephrol. | Single-Cell RNA Profiling of Glomerular Cells Shows Dynamic Changes in Experimental Diabetic Kidney Disease. | 2019-03-07 | 10.1681/ASN.2018090896 | 6 | view | |
| Treutlein | Cell Stem Cell | Evaluation of Wu et al.: Strengthening Single-Cell Bioinformatic Comparisons for Improving Organoid Differentiation. | 2019-03-07 | 10.1016/j.stem.2019.02.010 | view | ||
| Miyoshi | Dev. Dyn. | Kidney Organoids in Translational Medicine: Disease Modeling and Regenerative Medicine. | 2019-03-06 | 10.1002/dvdy.22 | 6 | view | |
| Tian | Curr. Opin. Nephrol. Hypertens. | The myriad possibility of kidney organoids. | 2019-03-06 | 10.1097/MNH.0000000000000498 | view | ||
| Cheng | Cell Rep | Single-Cell RNA-Seq Reveals Cellular Heterogeneity of Pluripotency Transition and X Chromosome Dynamics during Early Mouse Development. | 2019-03-05 | 10.1016/j.celrep.2019.02.031 | 5 | view | |
| Kwon | iScience | Functional Heterogeneity of Mouse Prostate Stromal Cells Revealed by Single-Cell RNA-Seq. | 2019-03-02 | 10.1016/j.isci.2019.02.032 | 3 | view | |
| Untereiner | FASEB J. | GABA promotes β-cell proliferation, but does not overcome impaired glucose homeostasis associated with diet-induced obesity. | 2019-03-01 | 10.1096/fj.201801397R | 18 | view | |
| Yu | FASEB J. | Data driven mathematical modeling reveals the dynamic mechanism of MSC-induced neovascularization. | 2019-03-01 | 10.1096/fj.201801652R | 1 | view | |
| Okawa | Nucleic Acids Res. | A general computational approach to predicting synergistic transcriptional cores that determine cell subpopulation identities. | 2019-03-01 | 10.1093/nar/gkz147 | view | ||
| Ding | Nucleic Acids Res. | Cell lineage inference from SNP and scRNA-Seq data. | 2019-03-01 | 10.1093/nar/gkz146 | 4 | view | |
| Marques | Methods Mol. Biol. | Single-Cell RNA Sequencing of Oligodendrocyte Lineage Cells from the Mouse Central Nervous System. | 2019-03-01 | 10.1007/978-1-4939-9072-6_1 | view | ||
| Zheng | Bioinformatics | SinNLRR: a robust subspace clustering method for cell type detection by nonnegative and low rank representation. | 2019-03-01 | 10.1093/bioinformatics/btz139 | view | ||
| Urrutia | Bioinformatics | Destin: toolkit for single-cell analysis of chromatin accessibility. | 2019-03-01 | 10.1093/bioinformatics/btz141 | 5 | view | |
| Vickman | Mol. Cancer Res. | Cholesterol Sulfotransferase SULT2B1b Modulates Sensitivity to Death Receptor Ligand TNF alpha in Castration Resistant Prostate Cancer. | 2019-03-01 | 10.1158/1541-7786.MCR-18-1054 | view | ||
| Liao | Development | Revealing cellular and molecular transitions in neonatal germ cell differentiation using Single-cell RNA sequencing. | 2019-03-01 | 10.1242/dev.174953 | 4 | view | |
| Long | Cell Death Differ. | Therapeutic resistance and susceptibility is shaped by cooperative multi-compartment tumor adaptation. | 2019-03-01 | 10.1038/s41418-019-0310-0 | 4 | view | |
| Theorell | PLoS ONE | Determination of essential phenotypic elements of clusters in high-dimensional entities-DEPECHE. | 2019-03-01 | 10.1371/journal.pone.0203247 | 3 | view | |
| Maj | Front Mol Neurosci | 20 Years of Secretagogin: Exocytosis and Beyond. | 2019-03-01 | 10.3389/fnmol.2019.00029 | 2 | view | |
| See | Front Immunol | Corrigendum: A Single-Cell Sequencing Guide for Immunologists. | 2019-03-01 | 10.3389/fimmu.2019.00278 | view | ||
| Goldman | Front Genet | The Impact of Heterogeneity on Single-Cell Sequencing. | 2019-03-01 | 10.3389/fgene.2019.00008 | 3 | view | |
| Cardozo | Front Genet | webCEMiTool: Co-expression Modular Analysis Made Easy. | 2019-03-01 | 10.3389/fgene.2019.00146 | view | ||
| Pandit | Front Immunol | Stochastic Inheritance of Division and Death Times Determines the Size and Phenotype of CD8+ T Cell Families. | 2019-03-01 | 10.3389/fimmu.2019.00436 | view | ||
| Cho | Genomics Inform | Identification of ERBB Pathway-Activated Cells in Triple-Negative Breast Cancer. | 2019-03-01 | 10.5808/GI.2019.17.1.e3 | 1 | view | |
| Randolph | Regen Eng Transl Med | Human beta cells generated from pluripotent stem cells or cellular reprogramming for curing diabetes. | 2019-03-01 | 10.1007/s40883-018-0082-y | view | ||
| Torroja | Front Genet | Corrigendum: Digitaldlsorter: Deep-Learning on scRNA-Seq to Deconvolute Gene Expression Data. | 2019-03-01 | 10.3389/fgene.2019.01373 | view | ||
| Sarma | Lab Chip | A diffusion-based microfluidic device for single-cell RNA-seq. | 2019-02-28 | 10.1039/c8lc00967h | 3 | view | |
| Damiani | PLoS Comput. Biol. | Integration of single-cell RNA-seq data into population models to characterize cancer metabolism. | 2019-02-28 | 10.1371/journal.pcbi.1006733 | 9 | view | |
| Zheng | Proc. Natl. Acad. Sci. U.S.A. | COX-2 mediates tumor-stromal prolactin signaling to initiate tumorigenesis. | 2019-02-28 | 10.1073/pnas.1819303116 | 4 | view | |
| Arendt | Curr. Opin. Neurobiol. | Evolution of neuronal types and families. | 2019-02-28 | 10.1016/j.conb.2019.01.022 | 9 | view | |
| Apóstolo | Curr. Opin. Neurobiol. | Compartmentalized distributions of neuronal and glial cell-surface proteins pattern the synaptic network. | 2019-02-28 | 10.1016/j.conb.2019.01.025 | 4 | view | |
| Bakouny | Eur Urol Focus | State of the Future: Translational Approaches in Renal Cell Carcinoma in the Immunotherapy Era. | 2019-02-28 | 10.1016/j.euf.2019.02.014 | 1 | view | |
| Ye | RNA Biol | Role of alternative polyadenylation dynamics in acute myeloid leukemia at single-cell resolution. | 2019-02-27 | 10.1080/15476286.2019.1586139 | view | ||
| Angelidis | Nat Commun | An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics. | 2019-02-27 | 10.1038/s41467-019-08831-9 | 66 | view | |
| Liu | Sci Data | Single-cell RNA-seq of cultured human adipose-derived mesenchymal stem cells. | 2019-02-26 | 10.1038/sdata.2019.31 | view | ||
| Yuan | FASEB J. | Conserved pathway activation following xenogeneic, heterotypic fusion. | 2019-02-26 | 10.1096/fj.201801700R | view | ||
| O'Koren | Immunity | Microglial Function Is Distinct in Different Anatomical Locations during Retinal Homeostasis and Degeneration. | 2019-02-26 | 10.1016/j.immuni.2019.02.007 | view | ||
| Xie | Nucleic Acids Res. | SuperCT: a supervised-learning framework for enhanced characterization of single-cell transcriptomic profiles. | 2019-02-25 | 10.1093/nar/gkz116 | 12 | view | |
| Kurotaki | Blood | Epigenetic control of early dendritic cell lineage specification by the transcription factor IRF8 in mice. | 2019-02-22 | 10.1182/blood-2018-06-857789 | 8 | view | |
| Levitin | Mol. Syst. Biol. | De novo gene signature identification from single-cell RNA-seq with hierarchical Poisson factorization. | 2019-02-22 | 10.15252/msb.20188557 | 18 | view | |
| Chen | Cell. Mol. Immunol. | Revolutionizing immunology with single-cell RNA sequencing. | 2019-02-22 | 10.1038/s41423-019-0214-4 | 11 | view | |
| Bai | Genomics | Screen technical noise in single cell RNA sequencing data. | 2019-02-22 | 10.1016/j.ygeno.2019.02.014 | 1 | view | |
| Kalamakis | Cell | Quiescence Modulates Stem Cell Maintenance and Regenerative Capacity in the Aging Brain. | 2019-02-22 | 10.1016/j.cell.2019.01.040 | 15 | view | |
| van Galen | Cell | Single-Cell RNA-Seq Reveals AML Hierarchies Relevant to Disease Progression and Immunity. | 2019-02-22 | 10.1016/j.cell.2019.01.031 | view | ||
| Hochane | PLoS Biol. | Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development. | 2019-02-21 | 10.1371/journal.pbio.3000152 | view | ||
| Jadhav | Cell | Dissecting Cell Lineages: From Microscope to Kaleidoscope. | 2019-02-21 | 10.1016/j.cell.2019.01.054 | view | ||
| Ma | JCI Insight | Single-cell RNA sequencing of lung adenocarcinoma reveals heterogeneity of immune response-related genes. | 2019-02-21 | 10.1172/jci.insight.121387 | view | ||
| Lin | JCI Insight | Single-cell analysis of fate-mapped macrophages reveals heterogeneity, including stem-like properties, during atherosclerosis progression and regression. | 2019-02-21 | 10.1172/jci.insight.124574 | 40 | view | |
| Huang | Curr. Opin. Nephrol. Hypertens. | The kidney transcriptome, from single cells to whole organs and back. | 2019-02-21 | 10.1097/MNH.0000000000000495 | view | ||
| Moussa | J. Comput. Biol. | Locality Sensitive Imputation for Single Cell RNA-Seq Data. | 2019-02-20 | 10.1089/cmb.2018.0236 | view | ||
| Peng | PLoS Comput. Biol. | A component overlapping attribute clustering (COAC) algorithm for single-cell RNA sequencing data analysis and potential pathobiological implications. | 2019-02-19 | 10.1371/journal.pcbi.1006772 | 3 | view | |
| Frank | Proc. Natl. Acad. Sci. U.S.A. | Early lineage specification defines alveolar epithelial ontogeny in the murine lung. | 2019-02-19 | 10.1073/pnas.1813952116 | 15 | view | |
| Mentis | Cell. Mol. Life Sci. | Helicobacter pylori infection and gastric cancer biology: tempering a double-edged sword. | 2019-02-19 | 10.1007/s00018-019-03044-1 | 4 | view | |
| Schultze | Immunity | Emerging Principles in Myelopoiesis at Homeostasis and during Infection and Inflammation. | 2019-02-19 | 10.1016/j.immuni.2019.01.019 | 8 | view | |
| Arranz | Lancet Neurol | The role of astroglia in Alzheimer's disease: pathophysiology and clinical implications. | 2019-02-19 | 10.1016/S1474-4422(18)30490-3 | view | ||
| Wang | Pediatr. Res. | A novel in vitro model of primary human pediatric lung epithelial cells. | 2019-02-18 | 10.1038/s41390-019-0340-9 | 13 | view | |
| Li | Dev. Cell | Rate of Progression through a Continuum of Transit-Amplifying Progenitor Cell States Regulates Blood Cell Production. | 2019-02-18 | 10.1016/j.devcel.2019.01.026 | 6 | view | |
| Rashid | Bioinformatics | Dhaka: Variational Autoencoder for Unmasking Tumor Heterogeneity from Single Cell Genomic Data. | 2019-02-15 | 10.1093/bioinformatics/btz095 | 4 | view | |
| Nowinski | Environ. Microbiol. | Microdiversity and Temporal Dynamics of Marine Bacterial Dimethylsulfoniopropionate Genes. | 2019-02-14 | 10.1111/1462-2920.14560 | 3 | view | |
| Zhao | Hepatology | Tissue repair in the mouse liver following acute carbon tetrachloride depends on injury-induced Wnt/β-catenin signaling. | 2019-02-14 | 10.1002/hep.30563 | view | ||
| Monier | PLoS Comput. Biol. | IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis. | 2019-02-14 | 10.1371/journal.pcbi.1006792 | 8 | view | |
| Haage | Acta Neuropathol Commun | Comprehensive gene expression meta-analysis identifies signature genes that distinguish microglia from peripheral monocytes/macrophages in health and glioma. | 2019-02-14 | 10.1186/s40478-019-0665-y | 28 | view | |
| Xiang | Cell Stem Cell | hESC-Derived Thalamic Organoids Form Reciprocal Projections When Fused with Cortical Organoids. | 2019-02-14 | 10.1016/j.stem.2018.12.015 | view | ||
| Dangi | Cell. Mol. Immunol. | Emerging approaches and technologies in transplantation: the potential game changers. | 2019-02-13 | 10.1038/s41423-019-0207-3 | 2 | view | |
| Wu | Mol. Cells | Lineage Tracing: Computational Reconstruction Goes Beyond the Limit of Imaging. | 2019-02-13 | 10.14348/molcells.2019.0006 | 5 | view | |
| Guo | Mol. Cell | Resolving Cell Fate Decisions during Somatic Cell Reprogramming by Single-Cell RNA-Seq. | 2019-02-13 | 10.1016/j.molcel.2019.01.042 | 7 | view | |
| Cui | Cell Rep | Single-Cell Transcriptome Analysis Maps the Developmental Track of the Human Heart. | 2019-02-12 | 10.1016/j.celrep.2019.01.079 | 73 | view | |
| Tyler | Cell Rep | PyMINEr Finds Gene and Autocrine-Paracrine Networks from Human Islet scRNA-Seq. | 2019-02-12 | 10.1016/j.celrep.2019.01.063 | 3 | view | |
| Choi | Mol. Cells | Dissecting Cellular Heterogeneity Using Single-Cell RNA Sequencing. | 2019-02-12 | 10.14348/molcells.2019.2446 | 5 | view | |
| Linderman | Nat. Methods | Fast interpolation-based t-SNE for improved visualization of single-cell RNA-seq data. | 2019-02-11 | 10.1038/s41592-018-0308-4 | 58 | view | |
| Sato | Genome Biol. | CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing. | 2019-02-11 | 10.1186/s13059-019-1639-x | view | ||
| Kim | Immunol. Cell Biol. | Macrophages in wound healing: activation and plasticity. | 2019-02-11 | 10.1111/imcb.12236 | 14 | view | |
| Rodriguez-Meira | Mol. Cell | Unravelling Intratumoral Heterogeneity through High-Sensitivity Single-Cell Mutational Analysis and Parallel RNA Sequencing. | 2019-02-11 | 10.1016/j.molcel.2019.01.009 | 25 | view | |
| Guo | Stem Cell Reports | Single-Cell RNA Sequencing of Human Embryonic Stem Cell Differentiation Delineates Adverse Effects of Nicotine on Embryonic Development. | 2019-02-11 | 10.1016/j.stemcr.2019.01.022 | 10 | view | |
| Wizeman | Elife | Specification of diverse cell types during early neurogenesis of the mouse cerebellum. | 2019-02-08 | 10.7554/eLife.42388 | 4 | view | |
| Yu | EMBO J. | Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution. | 2019-02-08 | 10.15252/embj.2018100164 | 7 | view | |
| Guerrero-Juarez | Nat Commun | Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds. | 2019-02-08 | 10.1038/s41467-018-08247-x | 19 | view | |
| Gutierrez-Arcelus | Nat Commun | Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions. | 2019-02-08 | 10.1038/s41467-019-08604-4 | 22 | view | |
| Koelwyn | Trends Immunol. | Defining Macrophages in the Heart One Cell at a Time. | 2019-02-08 | 10.1016/j.it.2019.01.010 | view | ||
| Carr | Cell Stem Cell | Mesenchymal Precursor Cells in Adult Nerves Contribute to Mammalian Tissue Repair and Regeneration. | 2019-02-07 | 10.1016/j.stem.2018.10.024 | 11 | view | |
| Tan | Cell Stem Cell | Human Spermatogonial Stem Cells Scrutinized under the Single-Cell Magnifying Glass. | 2019-02-07 | 10.1016/j.stem.2019.01.010 | 5 | view | |
| Mayer | Neuron | Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex. | 2019-02-07 | 10.1016/j.neuron.2019.01.027 | 10 | view | |
| Watcham | Blood | New Insights into Haematopoietic Differentiation Landscapes from scRNA-seq. | 2019-02-06 | 10.1182/blood-2018-08-835355 | view | ||
| Szczerba | Nature | Neutrophils escort circulating tumour cells to enable cell cycle progression. | 2019-02-06 | 10.1038/s41586-019-0915-y | 130 | view | |
| Ekiz | JCI Insight | MicroRNA-155 coordinates the immunological landscape within murine melanoma and correlates with immunity in human cancers. | 2019-02-05 | 10.1172/jci.insight.126543 | 6 | view | |
| Mould | JCI Insight | Single cell RNA sequencing identifies unique inflammatory airspace macrophage subsets. | 2019-02-05 | 10.1172/jci.insight.126556 | 31 | view | |
| Sohni | Cell Rep | The Neonatal and Adult Human Testis Defined at the Single-Cell Level. | 2019-02-05 | 10.1016/j.celrep.2019.01.045 | 36 | view | |
| Schreurs | Immunity | Human Fetal TNF-α-Cytokine-Producing CD4+ Effector Memory T Cells Promote Intestinal Development and Mediate Inflammation Early in Life. | 2019-02-05 | 10.1016/j.immuni.2018.12.010 | view | ||
| Poczobutt | Am. J. Respir. Crit. Care Med. | Defining the Cell Types That Drive IPF Using Single Cell RNA Sequencing. | 2019-02-04 | 10.1164/rccm.201901-0197ED | view | ||
| Ryu | Plant Physiol. | Single-cell RNA sequencing resolves molecular relationships among individual plant cells. | 2019-02-04 | 10.1104/pp.18.01482 | 71 | view | |
| Borcherding | Clin. Cancer Res. | Single-cell profiling of cutaneous T-cell lymphoma reveals underlying heterogeneity associated with disease progression. | 2019-02-04 | 10.1158/1078-0432.CCR-18-3309 | 10 | view | |
| Risso | Nat Commun | Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data. | 2019-02-04 | 10.1038/s41467-019-08614-2 | 1 | view | |
| Tiklová | Nat Commun | Single-cell RNA sequencing reveals midbrain dopamine neuron diversity emerging during mouse brain development. | 2019-02-04 | 10.1038/s41467-019-08453-1 | 47 | view | |
| Saint | Nat Microbiol | Single-cell imaging and RNA sequencing reveal patterns of gene expression heterogeneity during fission yeast growth and adaptation. | 2019-02-04 | 10.1038/s41564-018-0330-4 | 10 | view | |
| Nadal-Ribelles | Nat Microbiol | Sensitive high-throughput single-cell RNA-seq reveals within-clonal transcript correlations in yeast populations. | 2019-02-04 | 10.1038/s41564-018-0346-9 | 1 | view | |
| Papadopoulos | Bioinformatics | PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processes. | 2019-02-01 | 10.1093/bioinformatics/btz078 | 6 | view | |
| Zhou | Stem Cells Int | Stem Cells and Cellular Origins of Mammary Gland: Updates in Rationale, Controversies, and Cancer Relevance. | 2019-02-01 | 10.1155/2019/4247168 | 4 | view | |
| Potter | Methods Mol. Biol. | Dissociation of Tissues for Single-Cell Analysis. | 2019-02-01 | 10.1007/978-1-4939-9021-4_5 | 3 | view | |
| Brazovskaja | Curr. Opin. Biotechnol. | High-throughput single-cell transcriptomics on organoids. | 2019-02-01 | 10.1016/j.copbio.2018.11.002 | 5 | view | |
| Jiang | Methods Mol. Biol. | Quality Control of Single-Cell RNA-seq. | 2019-02-01 | 10.1007/978-1-4939-9057-3_1 | 20 | view | |
| Bacher | Methods Mol. Biol. | Normalization for Single-Cell RNA-Seq Data Analysis. | 2019-02-01 | 10.1007/978-1-4939-9057-3_2 | view | ||
| Kim | Methods Mol. Biol. | Analysis of Technical and Biological Variability in Single-Cell RNA Sequencing. | 2019-02-01 | 10.1007/978-1-4939-9057-3_3 | view | ||
| Shekhar | Methods Mol. Biol. | Identification of Cell Types from Single-Cell Transcriptomic Data. | 2019-02-01 | 10.1007/978-1-4939-9057-3_4 | 2 | view | |
| Sun | Methods Mol. Biol. | scMCA: A Tool to Define Mouse Cell Types Based on Single-Cell Digital Expression. | 2019-02-01 | 10.1007/978-1-4939-9057-3_6 | 1 | view | |
| Fan | Methods Mol. Biol. | Differential Pathway Analysis. | 2019-02-01 | 10.1007/978-1-4939-9057-3_7 | view | ||
| Ji | Methods Mol. Biol. | Pseudotime Reconstruction Using TSCAN. | 2019-02-01 | 10.1007/978-1-4939-9057-3_8 | view | ||
| Chen | Methods Mol. Biol. | Estimating Differentiation Potency of Single Cells Using Single-Cell Entropy (SCENT). | 2019-02-01 | 10.1007/978-1-4939-9057-3_9 | 3 | view | |
| Lamere | Methods Mol. Biol. | Inference of Gene Co-expression Networks from Single-Cell RNA-Sequencing Data. | 2019-02-01 | 10.1007/978-1-4939-9057-3_10 | view | ||
| Dong | Methods Mol. Biol. | Single-Cell Allele-Specific Gene Expression Analysis. | 2019-02-01 | 10.1007/978-1-4939-9057-3_11 | 5 | view | |
| Huang | Methods Mol. Biol. | Using BRIE to Detect and Analyze Splicing Isoforms in scRNA-Seq Data. | 2019-02-01 | 10.1007/978-1-4939-9057-3_12 | view | ||
| Lindeman | Methods Mol. Biol. | Antigen Receptor Sequence Reconstruction and Clonality Inference from scRNA-Seq Data. | 2019-02-01 | 10.1007/978-1-4939-9057-3_15 | 2 | view | |
| Mongia | Front Genet | McImpute: Matrix Completion Based Imputation for Single Cell RNA-seq Data. | 2019-02-01 | 10.3389/fgene.2019.00009 | 7 | view | |
| Blecher-Gonen | Cell Syst | Single-Cell Analysis of Diverse Pathogen Responses Defines a Molecular Roadmap for Generating Antigen-Specific Immunity. | 2019-02-01 | 10.1016/j.cels.2019.01.001 | 7 | view | |
| Yu | Methods Mol. Biol. | Usage of Single-Cell RNA Sequencing to Unveil Immune Lymphoid Cell Precursors. | 2019-02-01 | 10.1007/978-1-4939-8885-3_5 | view | ||
| Wardemann | Methods Mol. Biol. | Expression Cloning of Antibodies from Single Human B Cells. | 2019-02-01 | 10.1007/978-1-4939-9151-8_5 | view | ||
| Bagnoli | Methods Mol. Biol. | Studying Cancer Heterogeneity by Single-Cell RNA Sequencing. | 2019-02-01 | 10.1007/978-1-4939-9151-8_14 | view | ||
| Mou | Front Genet | Reproducibility of Methods to Detect Differentially Expressed Genes from Single-Cell RNA Sequencing. | 2019-02-01 | 10.3389/fgene.2019.01331 | view | ||
| Yang | Front Genet | Editorial: Bioinformatics Analysis of Single Cell Sequencing Data and Applications in Precision Medicine. | 2019-02-01 | 10.3389/fgene.2019.01358 | view | ||
| Gallivan | Front Genet | Analysis of Single-Cell Gene Pair Coexpression Landscapes by Stochastic Kinetic Modeling Reveals Gene-Pair Interactions in Development. | 2019-02-01 | 10.3389/fgene.2019.01387 | view | ||
| Winterhoff | Curr. Opin. Obstet. Gynecol. | Single-cell sequencing in ovarian cancer: a new frontier in precision medicine. | 2019-02-01 | 10.1097/GCO.0000000000000516 | 3 | view | |
| Penaranda | ACS Infect Dis | Single-Cell RNA Sequencing to Understand Host-Pathogen Interactions. | 2019-01-31 | 10.1021/acsinfecdis.8b00369 | 4 | view | |
| Stuart | Nat. Rev. Genet. | Integrative single-cell analysis. | 2019-01-29 | 10.1038/s41576-019-0093-7 | 129 | view | |
| Zhu | Genes (Basel) | A Hybrid Clustering Algorithm for Identifying Cell Types from Single-Cell RNA-Seq Data. | 2019-01-29 | 10.3390/genes10020098 | 4 | view | |
| Rosenzweig | Nat Commun | PD-1/PD-L1 checkpoint blockade harnesses monocyte-derived macrophages to combat cognitive impairment in a tauopathy mouse model. | 2019-01-28 | 10.1038/s41467-019-08352-5 | 13 | view | |
| Schiebinger | Cell | Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming. | 2019-01-28 | 10.1016/j.cell.2019.01.006 | 39 | view | |
| Peng | Cell | Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina. | 2019-01-28 | 10.1016/j.cell.2019.01.004 | 71 | view | |
| Lush | Elife | scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling. | 2019-01-25 | 10.7554/eLife.44431 | view | ||
| Collin | Stem Cells | CRX expression in pluripotent stem cell derived photoreceptors marks a transplantable subpopulation of early cones. | 2019-01-25 | 10.1002/stem.2974 | 1 | view | |
| Daughtry | Genome Res. | Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion. | 2019-01-25 | 10.1101/gr.239830.118 | 10 | view | |
| Lawlor | Elife | Nephron progenitor commitment is a stochastic process influenced by cell migration. | 2019-01-24 | 10.7554/eLife.41156 | 14 | view | |
| Williams | Curr. Opin. Neurobiol. | Neuronal cell types in the annelid Platynereis dumerilii. | 2019-01-24 | 10.1016/j.conb.2018.12.008 | 2 | view | |
| Maehara | Int J Oral Maxillofac Surg | Clinical features and mechanistic insights regarding IgG4-related dacryoadenitis and sialoadenitis: a review. | 2019-01-24 | 10.1016/j.ijom.2019.01.006 | view | ||
| Sahara | Dev. Cell | Population and Single-Cell Analysis of Human Cardiogenesis Reveals Unique LGR5 Ventricular Progenitors in Embryonic Outflow Tract. | 2019-01-24 | 10.1016/j.devcel.2019.01.005 | 5 | view | |
| Ba | Funct. Integr. Genomics | Single-cell transcriptome provides novel insights into antler stem cells, a cell type capable of mammalian organ regeneration. | 2019-01-23 | 10.1007/s10142-019-00659-2 | view | ||
| Hamza | Proc. Natl. Acad. Sci. U.S.A. | Optofluidic real-time cell sorter for longitudinal CTC studies in mouse models of cancer. | 2019-01-23 | 10.1073/pnas.1814102116 | 10 | view | |
| Eraslan | Nat Commun | Single-cell RNA-seq denoising using a deep count autoencoder. | 2019-01-23 | 10.1038/s41467-018-07931-2 | 50 | view | |
| Miragaia | Immunity | Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation. | 2019-01-23 | 10.1016/j.immuni.2019.01.001 | 62 | view | |
| Darde | Bioinformatics | The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community. | 2019-01-22 | 10.1093/bioinformatics/btz047 | 9 | view | |
| Huss | Hum. Hered. | Comparison of SureSelect and Nextera Exome Capture Performance in Single-Cell Sequencing. | 2019-01-22 | 10.1159/000490506 | 1 | view | |
| Yang | BMC Syst Biol | Correction to: MISC: missing imputation for single-cell RNA sequencing data. | 2019-01-22 | 10.1186/s12918-019-0681-3 | view | ||
| Wang | Nat Commun | Bulk tissue cell type deconvolution with multi-subject single-cell expression reference. | 2019-01-22 | 10.1038/s41467-018-08023-x | 51 | view | |
| Chapuy | Mucosal Immunol | Two distinct colonic CD14+ subsets characterized by single-cell RNA profiling in Crohn's disease. | 2019-01-22 | 10.1038/s41385-018-0126-0 | view | ||
| Kiselev | Nat. Rev. Genet. | Publisher Correction: Challenges in unsupervised clustering of single-cell RNA-seq data. | 2019-01-22 | 10.1038/s41576-019-0095-5 | 5 | view | |
| Messmer | Cell Rep | Transcriptional Heterogeneity in Naive and Primed Human Pluripotent Stem Cells at Single-Cell Resolution. | 2019-01-22 | 10.1016/j.celrep.2018.12.099 | view | ||
| Li | Nat. Immunol. | Memory CD4+ T cells are generated in the human fetal intestine. | 2019-01-21 | 10.1038/s41590-018-0294-9 | view | ||
| Ntranos | Nat. Methods | A discriminative learning approach to differential expression analysis for single-cell RNA-seq. | 2019-01-21 | 10.1038/s41592-018-0303-9 | 22 | view | |
| Castro Dias | Sci Rep | Claudin-3-deficient C57BL/6J mice display intact brain barriers. | 2019-01-18 | 10.1038/s41598-018-36731-3 | view | ||
| Wang | BMC Bioinformatics | Comparative analysis of differential gene expression analysis tools for single-cell RNA sequencing data. | 2019-01-18 | 10.1186/s12859-019-2599-6 | view | ||
| Tambe | BMC Bioinformatics | Barcode identification for single cell genomics. | 2019-01-17 | 10.1186/s12859-019-2612-0 | 1 | view | |
| Bassler | Annu. Rev. Immunol. | The Myeloid Cell Compartment-Cell by Cell. | 2019-01-16 | 10.1146/annurev-immunol-042718-041728 | 22 | view | |
| Chowdhury | IEEE/ACM Trans Comput Biol Bioinform | (Differential) Co-Expression Analysis of Gene Expression: A Survey of Best Practices. | 2019-01-16 | 10.1109/TCBB.2019.2893170 | 3 | view | |
| Adorjan | J. Anat. | Neuroserpin expression during human brain development and in adult brain revealed by immunohistochemistry and single cell RNA sequencing. | 2019-01-15 | 10.1111/joa.12931 | 3 | view | |
| Kiser | FASEB J. | Conditional deletion of Des1 in the mouse retina does not impair the visual cycle in cones. | 2019-01-15 | 10.1096/fj.201802493R | 5 | view | |
| Xu | Elife | Hedgehog signaling patterns the oral-aboral axis of the mandibular arch. | 2019-01-14 | 10.7554/eLife.40315 | 8 | view | |
| Hernandez-Barco | Clin. Cancer Res. | No Cell Left Unturned: Intraductal Papillary Mucinous Neoplasm Heterogeneity. | 2019-01-14 | 10.1158/1078-0432.CCR-18-3877 | 2 | view | |
| Aran | Nat. Immunol. | Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage. | 2019-01-14 | 10.1038/s41590-018-0276-y | 128 | view | |
| Gao | Bioinformatics | ClusterMap: Compare multiple Single Cell RNA-Seq datasets across different experimental conditions. | 2019-01-14 | 10.1093/bioinformatics/btz024 | 3 | view | |
| Rentzsch | Curr. Opin. Neurobiol. | Modern genomic tools reveal the structural and cellular diversity of cnidarian nervous systems. | 2019-01-14 | 10.1016/j.conb.2018.12.004 | 1 | view | |
| Asante | Environ Microbiol Rep | Understanding antimicrobial discovery and resistance from a metagenomic and metatranscriptomic perspective: Advances and applications. | 2019-01-13 | 10.1111/1758-2229.12735 | 15 | view | |
| Liu | J Transl Med | Single cell sequencing reveals gene expression signatures associated with bone marrow stromal cell subpopulations and time in culture. | 2019-01-11 | 10.1186/s12967-018-1766-2 | 4 | view | |
| Loo | Nat Commun | Single-cell transcriptomic analysis of mouse neocortical development. | 2019-01-11 | 10.1038/s41467-018-08079-9 | 30 | view | |
| Davis | Mol. Phylogenet. Evol. | Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi). | 2019-01-10 | 10.1016/j.ympev.2019.01.006 | 3 | view | |
| Stratton | J Vis Exp | Droplet Barcoding-Based Single Cell Transcriptomics of Adult Mammalian Tissues. | 2019-01-10 | 10.3791/58709 | view | ||
| Schmidt | ILAR J | Rational Design and In Vivo Characterization of Vaccine Adjuvants. | 2019-01-09 | 10.1093/ilar/ily018 | 1 | view | |
| O'Neal | J. Virol. | West Nile virus-inclusive single-cell RNA sequencing reveals heterogeneity in the type I interferon response within single cells. | 2019-01-09 | 10.1128/JVI.01778-18 | view | ||
| Takahashi | Proc. Natl. Acad. Sci. U.S.A. | Autocrine regulation of mesenchymal progenitor cell fates orchestrates tooth eruption. | 2019-01-08 | 10.1073/pnas.1810200115 | 14 | view | |
| Mizrak | Cell Rep | Single-Cell Analysis of Regional Differences in Adult V-SVZ Neural Stem Cell Lineages. | 2019-01-08 | 10.1016/j.celrep.2018.12.044 | 18 | view | |
| Manipur | Int. J. Biochem. Cell Biol. | Exploiting single-cell RNA sequencing data to link alternative splicing and cancer heterogeneity: a computational approach. | 2019-01-08 | 10.1016/j.biocel.2018.12.015 | view | ||
| Ciucci | Immunity | The Emergence and Functional Fitness of Memory CD4+ T Cells Require the Transcription Factor Thpok. | 2019-01-08 | 10.1016/j.immuni.2018.12.019 | view | ||
| Anaparthy | Cold Spring Harb Perspect Med | Single-Cell Applications of Next-Generation Sequencing. | 2019-01-07 | 10.1101/cshperspect.a026898 | 2 | view | |
| Kiselev | Nat. Rev. Genet. | Challenges in unsupervised clustering of single-cell RNA-seq data. | 2019-01-07 | 10.1038/s41576-018-0088-9 | view | ||
| Liu | Dev. Cell | Neurog3-Independent Methylation Is the Earliest Detectable Mark Distinguishing Pancreatic Progenitor Identity. | 2019-01-07 | 10.1016/j.devcel.2018.11.048 | 5 | view | |
| Crow | Curr. Opin. Neurobiol. | Single cell RNA-sequencing: replicability of cell types. | 2019-01-06 | 10.1016/j.conb.2018.12.002 | view | ||
| Wilson | Pediatr. Nephrol. | Kidney and organoid single-cell transcriptomics: the end of the beginning. | 2019-01-04 | 10.1007/s00467-018-4177-y | 4 | view | |
| Jang | Blood Cancer J | Molecular signatures of multiple myeloma progression through single cell RNA-Seq. | 2019-01-03 | 10.1038/s41408-018-0160-x | 11 | view | |
| Lang | Cell Stem Cell | Single-Cell Sequencing of iPSC-Dopamine Neurons Reconstructs Disease Progression and Identifies HDAC4 as a Regulator of Parkinson Cell Phenotypes. | 2019-01-03 | 10.1016/j.stem.2018.10.023 | 21 | view | |
| Satoh | J. Mol. Cell. Cardiol. | High-throughput single-molecule RNA imaging analysis reveals heterogeneous responses of cardiomyocytes to hemodynamic overload. | 2019-01-03 | 10.1016/j.yjmcc.2018.12.018 | 1 | view | |
| Larsson | Nature | Genomic encoding of transcriptional burst kinetics. | 2019-01-02 | 10.1038/s41586-018-0836-1 | view | ||
| Whitsett | Physiol. Rev. | Building and Regenerating the Lung Cell by Cell. | 2019-01-01 | 10.1152/physrev.00001.2018 | 22 | view | |
| Torres | Neurosurg. Clin. N. Am. | Alterations in the Brain Microenvironment in Diffusely Infiltrating Low-Grade Glioma. | 2019-01-01 | 10.1016/j.nec.2018.08.001 | 2 | view | |
| Dick | Nat. Immunol. | Self-renewing resident cardiac macrophages limit adverse remodeling following myocardial infarction. | 2019-01-01 | 10.1038/s41590-018-0272-2 | 134 | view | |
| Kim | Methods Mol. Biol. | Single-Cell Library Preparation of iPSC-Derived Neural Stem Cells. | 2019-01-01 | 10.1007/978-1-4939-9007-8_10 | view | ||
| Kim | Methods Mol. Biol. | Bioinformatics Analysis of Single-Cell RNA-Seq Raw Data from iPSC-Derived Neural Stem Cells. | 2019-01-01 | 10.1007/978-1-4939-9007-8_11 | view | ||
| McCurdy | PLoS ONE | Deterministic column subset selection for single-cell RNA-Seq. | 2019-01-01 | 10.1371/journal.pone.0210571 | view | ||
| Jansen | Epilepsy Curr | The Space-Time Continuum of Cortical Dysplasia. | 2019-01-01 | 10.1177/1535759718822039 | view | ||
| Franzén | Database (Oxford) | PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data. | 2019-01-01 | 10.1093/database/baz046 | view | ||
| Prodromidou | Front Cell Neurosci | Species-Specific miRNAs in Human Brain Development and Disease. | 2019-01-01 | 10.3389/fncel.2019.00559 | view | ||
| Krzak | Front Genet | Benchmark and Parameter Sensitivity Analysis of Single-Cell RNA Sequencing Clustering Methods. | 2019-01-01 | 10.3389/fgene.2019.01253 | view | ||
| Zhang | Front Genet | Revealing Dynamic Mechanisms of Cell Fate Decisions From Single-Cell Transcriptomic Data. | 2019-01-01 | 10.3389/fgene.2019.01280 | 2 | view | |
| Chaudhry | Front Cardiovasc Med | Single-Cell RNA Sequencing of the Cardiovascular System: New Looks for Old Diseases. | 2019-01-01 | 10.3389/fcvm.2019.00173 | view | ||
| Ma | BMC Bioinformatics | Single-cell gene expression analysis reveals β-cell dysfunction and deficit mechanisms in type 2 diabetes. | 2018-12-31 | 10.1186/s12859-018-2519-1 | 5 | view | |
| Gan | BMC Med Genomics | Identification of cancer subtypes from single-cell RNA-seq data using a consensus clustering method. | 2018-12-31 | 10.1186/s12920-018-0433-z | view | ||
| Li | Bioinformatics | Single-cell RNA-seq Interpretations using Evolutionary Multiobjective Ensemble Pruning. | 2018-12-28 | 10.1093/bioinformatics/bty1056 | 9 | view | |
| Saito | Neuron | Differential NOVA2-Mediated Splicing in Excitatory and Inhibitory Neurons Regulates Cortical Development and Cerebellar Function. | 2018-12-28 | 10.1016/j.neuron.2018.12.019 | 15 | view | |
| Field | Stem Cell Reports | Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes. | 2018-12-28 | 10.1016/j.stemcr.2018.12.006 | view | ||
| Andor | Blood | Single-cell RNA-Seq of lymphoma cancers reveals malignant B cell types and co-expression of T cell immune checkpoints. | 2018-12-27 | 10.1182/blood-2018-08-862292 | 1 | view | |
| Li | Neuron | Developmental Heterogeneity of Microglia and Brain Myeloid Cells Revealed by Deep Single-Cell RNA Sequencing. | 2018-12-27 | 10.1016/j.neuron.2018.12.006 | 106 | view | |
| Higdon | J. Immunol. Methods | Optimization of single-cell plate sorting for high throughput sequencing applications. | 2018-12-24 | 10.1016/j.jim.2018.12.006 | 1 | view | |
| Yuan | Genome Biol. | SCOPE-Seq: a scalable technology for linking live cell imaging and single-cell RNA sequencing. | 2018-12-24 | 10.1186/s13059-018-1607-x | 8 | view | |
| Romagnoli | BMC Genomics | ddSeeker: a tool for processing Bio-Rad ddSEQ single cell RNA-seq data. | 2018-12-24 | 10.1186/s12864-018-5249-x | 1 | view | |
| Gasperini | Cell | A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens. | 2018-12-22 | 10.1016/j.cell.2018.11.029 | 71 | view | |
| Wang | BMC Syst Biol | The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: systems biology on diverse data types. | 2018-12-21 | 10.1186/s12918-018-0648-9 | view | ||
| Chiu | BMC Syst Biol | scdNet: a computational tool for single-cell differential network analysis. | 2018-12-21 | 10.1186/s12918-018-0652-0 | 4 | view | |
| Büttner | Nat. Methods | A test metric for assessing single-cell RNA-seq batch correction. | 2018-12-20 | 10.1038/s41592-018-0254-1 | 28 | view | |
| Neirijnck | Endocrinology | The tumor suppressor PTEN regulates negatively Sertoli cell proliferation, testis size and sperm production in vivo. | 2018-12-20 | 10.1210/en.2018-00892 | view | ||
| Li | Cell | Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma. | 2018-12-20 | 10.1016/j.cell.2018.11.043 | 105 | view | |
| Mok | Dev. Cell | Dermal Condensate Niche Fate Specification Occurs Prior to Formation and Is Placode Progenitor Dependent. | 2018-12-20 | 10.1016/j.devcel.2018.11.034 | 11 | view | |
| van der Wijst | Genome Med | An integrative approach for building personalized gene regulatory networks for precision medicine. | 2018-12-19 | 10.1186/s13073-018-0608-4 | view | ||
| Stoeckius | Genome Biol. | Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics. | 2018-12-19 | 10.1186/s13059-018-1603-1 | 33 | view | |
| Karmaus | Nature | Metabolic heterogeneity underlies reciprocal fates of TH17 cell stemness and plasticity. | 2018-12-19 | 10.1038/s41586-018-0806-7 | view | ||
| Gupta | Dev. Cell | Single-Cell Analysis Reveals a Hair Follicle Dermal Niche Molecular Differentiation Trajectory that Begins Prior to Morphogenesis. | 2018-12-19 | 10.1016/j.devcel.2018.11.032 | 9 | view | |
| Egli | Immunogenetics | The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcγR) in the Göttingen minipig. | 2018-12-18 | 10.1007/s00251-018-01099-1 | 1 | view | |
| Garieri | Proc. Natl. Acad. Sci. U.S.A. | Extensive cellular heterogeneity of X inactivation revealed by single-cell allele-specific expression in human fibroblasts. | 2018-12-18 | 10.1073/pnas.1806811115 | 18 | view | |
| Henry | Cell Rep | A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra. | 2018-12-18 | 10.1016/j.celrep.2018.11.086 | 31 | view | |
| Wang | Genomics Proteomics Bioinformatics | VASC: Dimension Reduction and Visualization of Single-cell RNA-seq Data by Deep Variational Autoencoder. | 2018-12-18 | 10.1016/j.gpb.2018.08.003 | 16 | view | |
| Saikia | Nat. Methods | Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells. | 2018-12-17 | 10.1038/s41592-018-0259-9 | 31 | view | |
| Shema | Nat. Genet. | Single-cell and single-molecule epigenomics to uncover genome regulation at unprecedented resolution. | 2018-12-17 | 10.1038/s41588-018-0290-x | 31 | view | |
| Reyfman | Am. J. Respir. Crit. Care Med. | Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis. | 2018-12-15 | 10.1164/rccm.201712-2410OC | 138 | view | |
| Westerlund | Biochem. Biophys. Res. Commun. | EPAS1/HIF2α correlates with features of low-risk neuroblastoma and with adrenal chromaffin cell differentiation during sympathoadrenal development. | 2018-12-15 | 10.1016/j.bbrc.2018.12.076 | 2 | view | |
| Croote | Science | High-affinity allergen-specific human antibodies cloned from single IgE B cell transcriptomes. | 2018-12-14 | 10.1126/science.aau2599 | 36 | view | |
| Yang | BMC Syst Biol | MISC: missing imputation for single-cell RNA sequencing data. | 2018-12-14 | 10.1186/s12918-018-0638-y | 2 | view | |
| Yu | Cytometry A | An integrated enrichment system to facilitate isolation and molecular characterization of single cancer cells from whole blood. | 2018-12-14 | 10.1002/cyto.a.23599 | 4 | view | |
| Schlenner | Ann. Rheum. Dis. | NFIL3 mutations alter immune homeostasis and sensitise for arthritis pathology. | 2018-12-14 | 10.1136/annrheumdis-2018-213764 | view | ||
| Freedman | Nephron | Better Being Single? Omics Improves Kidney Organoids. | 2018-12-14 | 10.1159/000496009 | 4 | view | |
| Wang | Cell Metab. | Single-Cell RNA-Seq of the Pancreatic Islets--a Promise Not yet Fulfilled? | 2018-12-14 | 10.1016/j.cmet.2018.11.016 | 16 | view | |
| Wu | Haematologica | Long noncoding RNAs of single hematopoietic stem and progenitor cells in healthy and dysplastic human bone marrow. | 2018-12-13 | 10.3324/haematol.2018.208926 | 3 | view | |
| Collin | Stem Cells | Deconstructing Retinal Organoids: Single cell RNA-Seq reveals the cellular components of human pluripotent stem cell-derived retina. | 2018-12-12 | 10.1002/stem.2963 | 15 | view | |
| Thier | Cell Stem Cell | Identification of Embryonic Neural Plate Border Stem Cells and Their Generation by Direct Reprogramming from Adult Human Blood Cells. | 2018-12-12 | 10.1016/j.stem.2018.11.015 | view | ||
| Sa | Int. J. Cancer | Hypermutagenesis in untreated adult gliomas due to inherited mismatch mutations. | 2018-12-11 | 10.1002/ijc.32054 | 4 | view | |
| Mann | Cell Rep | Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli Are Altered with Age. | 2018-12-11 | 10.1016/j.celrep.2018.11.056 | 26 | view | |
| Hao | Bioinformatics | Optimal Gene Filtering for Single-Cell data (OGFSC) - a gene filtering algorithm for single-cell RNA-seq data. | 2018-12-10 | 10.1093/bioinformatics/bty1016 | view | ||
| da Costa | Urol. Oncol. | Molecular tumor heterogeneity in muscle invasive bladder cancer: Biomarkers, subtypes, and implications for therapy. | 2018-12-08 | 10.1016/j.urolonc.2018.11.015 | view | ||
| Hochrein | ACS Synth Biol | Signal Transduction in Human Cell Lysate via Dynamic RNA Nanotechnology. | 2018-12-07 | 10.1021/acssynbio.8b00424 | 4 | view | |
| Zanini | Proc. Natl. Acad. Sci. U.S.A. | Virus-inclusive single-cell RNA sequencing reveals the molecular signature of progression to severe dengue. | 2018-12-07 | 10.1073/pnas.1813819115 | 45 | view | |
| Chen | Bioinformatics | DensityPath: an algorithm to visualize and reconstruct cell state-transition path on density landscape for single-cell RNA sequencing data. | 2018-12-07 | 10.1093/bioinformatics/bty1009 | view | ||
| Fujii | Cell Stem Cell | Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition. | 2018-12-06 | 10.1016/j.stem.2018.11.016 | 26 | view | |
| Oetjen | JCI Insight | Human bone marrow assessment by single-cell RNA sequencing, mass cytometry, and flow cytometry. | 2018-12-06 | 10.1172/jci.insight.124928 | view | ||
| Kim | Bioinformatics | In silico error correction improves cfDNA mutation calling. | 2018-12-06 | 10.1093/bioinformatics/bty1004 | view | ||
| Tepe | Cell Rep | Single-Cell RNA-Seq of Mouse Olfactory Bulb Reveals Cellular Heterogeneity and Activity-Dependent Molecular Census of Adult-Born Neurons. | 2018-12-04 | 10.1016/j.celrep.2018.11.034 | 15 | view | |
| Li | BMC Cancer | EGF/EGFR upregulates and cooperates with Netrin-4 to protect glioblastoma cells from DNA damage-induced senescence. | 2018-12-04 | 10.1186/s12885-018-5056-4 | 2 | view | |
| Leigh | Nat Commun | Transcriptomic landscape of the blastema niche in regenerating adult axolotl limbs at single-cell resolution. | 2018-12-04 | 10.1038/s41467-018-07604-0 | 25 | view | |
| Singer | Nat Commun | Single-cell mutation identification via phylogenetic inference. | 2018-12-04 | 10.1038/s41467-018-07627-7 | 12 | view | |
| Bartoschek | Nat Commun | Spatially and functionally distinct subclasses of breast cancer-associated fibroblasts revealed by single cell RNA sequencing. | 2018-12-04 | 10.1038/s41467-018-07582-3 | 76 | view | |
| Wu | J. Am. Soc. Nephrol. | Advantages of Single-Nucleus over Single-Cell RNA Sequencing of Adult Kidney: Rare Cell Types and Novel Cell States Revealed in Fibrosis. | 2018-12-03 | 10.1681/ASN.2018090912 | 32 | view | |
| Becht | Nat. Biotechnol. | Dimensionality reduction for visualizing single-cell data using UMAP. | 2018-12-03 | 10.1038/nbt.4314 | 362 | view | |
| Ren | Genome Biol. | Understanding tumor ecosystems by single-cell sequencing: promises and limitations. | 2018-12-03 | 10.1186/s13059-018-1593-z | 25 | view | |
| Chen | Nat. Med. | Myelodysplastic syndrome progression to acute myeloid leukemia at the stem cell level. | 2018-12-03 | 10.1038/s41591-018-0267-4 | 16 | view | |
| McCracken | Curr. Opin. Lipidol. | Unravelling atherosclerotic heterogeneity by single cell RNA sequencing. | 2018-12-01 | 10.1097/MOL.0000000000000559 | view | ||
| Lopez | Nat. Methods | Deep generative modeling for single-cell transcriptomics. | 2018-12-01 | 10.1038/s41592-018-0229-2 | 61 | view | |
| Ledergor | Nat. Med. | Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma. | 2018-12-01 | 10.1038/s41591-018-0269-2 | 30 | view | |
| Massaia | Front Cardiovasc Med | Single Cell Gene Expression to Understand the Dynamic Architecture of the Heart. | 2018-12-01 | 10.3389/fcvm.2018.00167 | view | ||
| Shih | PLoS ONE | Correction: Identification of grade and origin specific cell populations in serous epithelial ovarian cancer by single cell RNA-seq. | 2018-12-01 | 10.1371/journal.pone.0208778 | view | ||
| Yao | PLoS ONE | Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments. | 2018-12-01 | 10.1371/journal.pone.0208484 | view | ||
| Huang | Front Oncol | Technical Advances in Single-Cell RNA Sequencing and Applications in Normal and Malignant Hematopoiesis. | 2018-12-01 | 10.3389/fonc.2018.00582 | 2 | view | |
| Bakken | PLoS ONE | Single-nucleus and single-cell transcriptomes compared in matched cortical cell types. | 2018-12-01 | 10.1371/journal.pone.0209648 | 21 | view | |
| Sierant | Genomics Inform | Single-Cell Ssequencing in Cancer: Recent Applications to Immunogenomics and Multi-omics Tools. | 2018-12-01 | 10.5808/GI.2018.16.4.e17 | view | ||
| Bonventre | Kidney Int. | Kidney organoids-a new tool for kidney therapeutic development. | 2018-12-01 | 10.1016/j.kint.2018.07.029 | 1 | view | |
| Kim | Dement Neurocogn Disord | Genetics of Alzheimer's Disease. | 2018-12-01 | 10.12779/dnd.2018.17.4.131 | view | ||
| Nikopoulou | Biol. Chem. | Ageing and sources of transcriptional heterogeneity. | 2018-12-01 | 10.1515/hsz-2018-0449 | 1 | view | |
| Riemondy | Nucleic Acids Res. | Recovery and analysis of transcriptome subsets from pooled single-cell RNA-seq libraries. | 2018-11-29 | 10.1093/nar/gky1204 | 4 | view | |
| Peng | Cell | Inflammatory Cytokine TNFα Promotes the Long-Term Expansion of Primary Hepatocytes in 3D Culture. | 2018-11-29 | 10.1016/j.cell.2018.11.012 | 20 | view | |
| Barrett | Stem Cells Dev. | Human Wharton's Jelly Mesenchymal Stem Cells Show Unique Gene Expression Compared to Bone Marrow Mesenchymal Stem Cells Using Single-Cell RNA-Sequencing. | 2018-11-28 | 10.1089/scd.2018.0132 | view | ||
| Xin | Nat Commun | Single-cell RNA sequencing unveils an IL-10-producing helper subset that sustains humoral immunity during persistent infection. | 2018-11-28 | 10.1038/s41467-018-07492-4 | view | ||
| Wu | Cell Syst | Visualizing and Interpreting Single-Cell Gene Expression Datasets with Similarity Weighted Nonnegative Embedding. | 2018-11-28 | 10.1016/j.cels.2018.10.015 | 22 | view | |
| Hadi | Nat Commun | Macrophage-derived netrin-1 promotes abdominal aortic aneurysm formation by activating MMP3 in vascular smooth muscle cells. | 2018-11-27 | 10.1038/s41467-018-07495-1 | 11 | view | |
| Ariss | Nat Commun | Single cell RNA-sequencing identifies a metabolic aspect of apoptosis in Rbf mutant. | 2018-11-27 | 10.1038/s41467-018-07540-z | 6 | view | |
| Kimmerling | Genome Biol. | Linking single-cell measurements of mass, growth rate, and gene expression. | 2018-11-27 | 10.1186/s13059-018-1576-0 | 6 | view | |
| Zywitza | Cell Rep | Single-Cell Transcriptomics Characterizes Cell Types in the Subventricular Zone and Uncovers Molecular Defects Impairing Adult Neurogenesis. | 2018-11-27 | 10.1016/j.celrep.2018.11.003 | 18 | view | |
| Garris | Immunity | Successful Anti-PD-1 Cancer Immunotherapy Requires T Cell-Dendritic Cell Crosstalk Involving the Cytokines IFN-γ and IL-12. | 2018-11-27 | 10.1016/j.immuni.2018.09.024 | 93 | view | |
| Bancells | Nat Microbiol | Revisiting the initial steps of sexual development in the malaria parasite Plasmodium falciparum. | 2018-11-26 | 10.1038/s41564-018-0291-7 | 21 | view | |
| Zheng | Mol. Immunol. | A complex auxiliary: IL-17/Th17 signaling during type 1 diabetes progression. | 2018-11-22 | 10.1016/j.molimm.2018.11.007 | view | ||
| Sharma | Nat Commun | Longitudinal single-cell RNA sequencing of patient-derived primary cells reveals drug-induced infidelity in stem cell hierarchy. | 2018-11-22 | 10.1038/s41467-018-07261-3 | 26 | view | |
| Alpár | Curr. Opin. Neurobiol. | Hypothalamic cell diversity: non-neuronal codes for long-distance volume transmission by neuropeptides. | 2018-11-21 | 10.1016/j.conb.2018.10.012 | 4 | view | |
| Hammond | Immunity | Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes. | 2018-11-21 | 10.1016/j.immuni.2018.11.004 | 115 | view | |
| Churko | Nat Commun | Defining human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis. | 2018-11-21 | 10.1038/s41467-018-07333-4 | 23 | view | |
| Singh | Sci Rep | Machine learning based classification of cells into chronological stages using single-cell transcriptomics. | 2018-11-21 | 10.1038/s41598-018-35218-5 | 4 | view | |
| Poirion | Nat Commun | Using single nucleotide variations in single-cell RNA-seq to identify subpopulations and genotype-phenotype linkage. | 2018-11-20 | 10.1038/s41467-018-07170-5 | 3 | view | |
| Seki | DNA Res. | Evaluation and application of RNA-Seq by MinION. | 2018-11-20 | 10.1093/dnares/dsy038 | 1 | view | |
| Dura | Nucleic Acids Res. | scFTD-seq: freeze-thaw lysis based, portable approach toward highly distributed single-cell 3' mRNA profiling. | 2018-11-20 | 10.1093/nar/gky1173 | view | ||
| Lu | Cell Rep | The Molecular Signature of Megakaryocyte-Erythroid Progenitors Reveals a Role for the Cell Cycle in Fate Specification. | 2018-11-20 | 10.1016/j.celrep.2018.10.084 | 8 | view | |
| Czupalla | Bio Protoc | Collagenase-based Single Cell Isolation of Primary Murine Brain Endothelial Cells Using Flow Cytometry. | 2018-11-20 | 10.21769/BioProtoc.3092 | 9 | view | |
| Peng | Immunity | Seq-ing out the Killers of Mice and Men. | 2018-11-20 | 10.1016/j.immuni.2018.11.007 | view | ||
| Jia | Nat Commun | Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement. | 2018-11-19 | 10.1038/s41467-018-07307-6 | 16 | view | |
| Aulicino | Nat Commun | Invasive Salmonella exploits divergent immune evasion strategies in infected and bystander dendritic cell subsets. | 2018-11-19 | 10.1038/s41467-018-07329-0 | 5 | view | |
| Lee | Sci Rep | Detection of correlated hidden factors from single cell transcriptomes using Iteratively Adjusted-SVA (IA-SVA). | 2018-11-19 | 10.1038/s41598-018-35365-9 | 3 | view | |
| Nelson | Nat Commun | Publisher Correction: Single-cell RNA-seq reveals cell type-specific transcriptional signatures at the maternal-foetal interface during pregnancy. | 2018-11-19 | 10.1038/ncomms16219 | view | ||
| Heuvel | Hum. Mol. Genet. | Single-cell RNA-sequencing in facioscapulohumeral muscular dystrophy disease etiology and development. | 2018-11-16 | 10.1093/hmg/ddy400 | 6 | view | |
| Chen | Bioinformatics | pyNVR: Investigating factors affecting feature selection from scRNA-seq data for lineage reconstruction. | 2018-11-16 | 10.1093/bioinformatics/bty950 | 6 | view | |
| Hernández | Sci Immunol | Single-cell transcriptional analysis reveals ILC-like cells in zebrafish. | 2018-11-16 | 10.1126/sciimmunol.aau5265 | 21 | view | |
| Lafzi | Nat Protoc | Tutorial: guidelines for the experimental design of single-cell RNA sequencing studies. | 2018-11-16 | 10.1038/s41596-018-0073-y | 22 | view | |
| Kimura | Cancer Sci. | Immunomodulatory activity of lenvatinib contributes to antitumor activity in the Hepa1-6 hepatocellular carcinoma model. | 2018-11-16 | 10.1111/cas.13806 | 1 | view | |
| Zhang | Mol. Cell | Comparative Analysis of Droplet-Based Ultra-High-Throughput Single-Cell RNA-Seq Systems. | 2018-11-16 | 10.1016/j.molcel.2018.10.020 | 73 | view | |
| Moerman | Bioinformatics | GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks. | 2018-11-15 | 10.1093/bioinformatics/bty916 | 14 | view | |
| Nilsson | Allergy | New insights into the origin of mast cells. | 2018-11-14 | 10.1111/all.13668 | 2 | view | |
| Kuboki | J. Pathol. | Single-cell sequencing defines genetic heterogeneity in pancreatic cancer precursor lesions. | 2018-11-14 | 10.1002/path.5194 | 17 | view | |
| Hinohara | Cancer Cell | KDM5 Histone Demethylase Activity Links Cellular Transcriptomic Heterogeneity to Therapeutic Resistance. | 2018-11-14 | 10.1016/j.ccell.2018.10.014 | 17 | view | |
| Alavi | Nat Commun | A web server for comparative analysis of single-cell RNA-seq data. | 2018-11-13 | 10.1038/s41467-018-07165-2 | 13 | view | |
| Shifrut | Cell | Genome-wide CRISPR Screens in Primary Human T Cells Reveal Key Regulators of Immune Function. | 2018-11-13 | 10.1016/j.cell.2018.10.024 | 50 | view | |
| Vuong | PLoS Genet. | Single-cell RNA-sequencing reveals transcriptional dynamics of estrogen-induced dysplasia in the ovarian surface epithelium. | 2018-11-12 | 10.1371/journal.pgen.1007788 | 2 | view | |
| Chen | Genome Biol. | VIPER: variability-preserving imputation for accurate gene expression recovery in single-cell RNA sequencing studies. | 2018-11-12 | 10.1186/s13059-018-1575-1 | 23 | view | |
| Parekh | Cell Syst | Mapping Cellular Reprogramming via Pooled Overexpression Screens with Paired Fitness and Single-Cell RNA-Sequencing Readout. | 2018-11-12 | 10.1016/j.cels.2018.10.008 | view | ||
| Behjati Ardakani | Epigenetics Chromatin | Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters. | 2018-11-10 | 10.1186/s13072-018-0236-7 | view | ||
| Balboa | Elife | Insulin mutations impair beta-cell development in a patient-derived iPSC model of neonatal diabetes. | 2018-11-09 | 10.7554/eLife.38519 | 21 | view | |
| Zhu | Elife | T-ALL leukemia stem cell 'stemness' is epigenetically controlled by the master regulator SPI1. | 2018-11-09 | 10.7554/eLife.38314 | 7 | view | |
| Khong | Stem Cells | Single-Cell Transcriptomics of Human Mesenchymal Stem Cells Reveal Age-Related Cellular Subpopulation Depletion and Impaired Regenerative Function. | 2018-11-09 | 10.1002/stem.2934 | 13 | view | |
| Boroviak | Development | Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development. | 2018-11-09 | 10.1242/dev.167833 | 38 | view | |
| Jindal | Nat Commun | Discovery of rare cells from voluminous single cell expression data. | 2018-11-09 | 10.1038/s41467-018-07234-6 | 7 | view | |
| Lu | J Mol Cell Biol | Single-cell analyses identify distinct and intermediate states of zebrafish pancreatic islet development. | 2018-11-08 | 10.1093/jmcb/mjy064 | 2 | view | |
| Westoby | Genome Biol. | Simulation-based benchmarking of isoform quantification in single-cell RNA-seq. | 2018-11-07 | 10.1186/s13059-018-1571-5 | 10 | view | |
| Yin | J. Biol. Chem. | Single-cell RNA-Seq analysis identifies a noncoding interleukin 4 (IL-4) RNA that post-transcriptionally up-regulates IL-4 production in T helper cells. | 2018-11-07 | 10.1074/jbc.RA118.004111 | view | ||
| Revinski | Nat Commun | CDC20B is required for deuterosome-mediated centriole production in multiciliated cells. | 2018-11-07 | 10.1038/s41467-018-06768-z | 17 | view | |
| Jones | Cell Stem Cell | Quantitative Clonal Analysis and Single-Cell Transcriptomics Reveal Division Kinetics, Hierarchy, and Fate of Oral Epithelial Progenitor Cells. | 2018-11-07 | 10.1016/j.stem.2018.10.015 | 15 | view | |
| Kumar | Cell Rep | Analysis of Single-Cell RNA-Seq Identifies Cell-Cell Communication Associated with Tumor Characteristics. | 2018-11-06 | 10.1016/j.celrep.2018.10.047 | 47 | view | |
| Talwar | Sci Rep | AutoImpute: Autoencoder based imputation of single-cell RNA-seq data. | 2018-11-05 | 10.1038/s41598-018-34688-x | 37 | view | |
| Salzer | Cell | Identity Noise and Adipogenic Traits Characterize Dermal Fibroblast Aging. | 2018-11-03 | 10.1016/j.cell.2018.10.012 | 51 | view | |
| Wang | Sci Immunol | Combination cancer immunotherapy targeting PD-1 and GITR can rescue CD8+ T cell dysfunction and maintain memory phenotype. | 2018-11-02 | 10.1126/sciimmunol.aat7061 | 1 | view | |
| Bajpai | Circ. Res. | Tissue Resident CCR2- and CCR2+ Cardiac Macrophages Differentially Orchestrate Monocyte Recruitment and Fate Specification Following Myocardial Injury. | 2018-11-02 | 10.1161/CIRCRESAHA.118.314028 | 71 | view | |
| Wallrapp | Immunol. Rev. | Type 2 innate lymphoid cells in the induction and resolution of tissue inflammation. | 2018-11-01 | 10.1111/imr.12702 | 6 | view | |
| Jusino | J Cancer Metastasis Treat | Centrosome aberrations and chromosome instability contribute to tumorigenesis and intra-tumor heterogeneity. | 2018-11-01 | 10.20517/2394-4722.2018.24 | 7 | view | |
| Tasic | Nature | Shared and distinct transcriptomic cell types across neocortical areas. | 2018-11-01 | 10.1038/s41586-018-0654-5 | 169 | view | |
| Bhaduri | Nature | Single-cell sequencing paints diverse pictures of the brain. | 2018-11-01 | 10.1038/d41586-018-07027-3 | view | ||
| Shih | PLoS ONE | Identification of grade and origin specific cell populations in serous epithelial ovarian cancer by single cell RNA-seq. | 2018-11-01 | 10.1371/journal.pone.0206785 | 8 | view | |
| Moffitt | Science | Molecular, spatial and functional single-cell profiling of the hypothalamic preoptic region. | 2018-11-01 | 10.1126/science.aau5324 | 117 | view | |
| Bernard | Clin. Cancer Res. | Single Cell Transcriptomics of Pancreatic Cancer Precursors Demonstrates Epithelial and Microenvironmental Heterogeneity as an Early Event in Neoplastic Progression. | 2018-11-01 | 10.1158/1078-0432.CCR-18-1955 | 34 | view | |
| Dobnikar | Nat Commun | Disease-relevant transcriptional signatures identified in individual smooth muscle cells from healthy mouse vessels. | 2018-11-01 | 10.1038/s41467-018-06891-x | 1 | view | |
| Scott | Cell | Tissue Unit-ed: Lung Cells Team up to Drive Alveolar Macrophage Development. | 2018-11-01 | 10.1016/j.cell.2018.10.031 | 1 | view | |
| Jerby-Arnon | Cell | A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade. | 2018-11-01 | 10.1016/j.cell.2018.09.006 | 171 | view | |
| Uniken Venema | Gastroenterology | Single-cell RNA Sequencing of Blood and Ileal T cells From Patients With Crohn's Disease Reveals Tissue-specific Characteristics and Drug Targets. | 2018-11-01 | 10.1053/j.gastro.2018.10.046 | view | ||
| Jiang | Cell Discov | Maintenance of human haematopoietic stem and progenitor cells in vitro using a chemical cocktail. | 2018-11-01 | 10.1038/s41421-018-0059-5 | 4 | view | |
| Yang | NPJ Breast Cancer | An assessment of prognostic immunity markers in breast cancer. | 2018-11-01 | 10.1038/s41523-018-0088-0 | 7 | view | |
| McTaggart | BioTechniques | Chromium sequencing: the doors open for genomics of obligate plant pathogens. | 2018-11-01 | 10.2144/btn-2018-0019 | 4 | view | |
| See | Front Immunol | A Single-Cell Sequencing Guide for Immunologists. | 2018-11-01 | 10.3389/fimmu.2018.02425 | 12 | view | |
| Wu | PLoS ONE | Characterization of sensory neuronal subtypes innervating mouse tongue. | 2018-11-01 | 10.1371/journal.pone.0207069 | 2 | view | |
| Crinier | Immunity | High-Dimensional Single-Cell Analysis Identifies Organ-Specific Signatures and Conserved NK Cell Subsets in Humans and Mice. | 2018-11-01 | 10.1016/j.immuni.2018.09.009 | 35 | view | |
| Bai | PLoS ONE | Evaluation of the capacities of mouse TCR profiling from short read RNA-seq data. | 2018-11-01 | 10.1371/journal.pone.0207020 | view | ||
| Bacon | Front Immunol | Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice. | 2018-11-01 | 10.3389/fimmu.2018.02523 | view | ||
| Wu | Cell Stem Cell | Comparative Analysis and Refinement of Human PSC-Derived Kidney Organoid Differentiation with Single-Cell Transcriptomics. | 2018-11-01 | 10.1016/j.stem.2018.10.010 | 91 | view | |
| Durruthy-Durruthy | Front Genet | Single Cell Transcriptomics Reveal Abnormalities in Neurosensory Patterning of the Chd7 Mutant Mouse Ear. | 2018-11-01 | 10.3389/fgene.2018.00473 | 1 | view | |
| Lieberman | PLoS ONE | Correction: CaSTLe - Classification of single cells by transfer learning: Harnessing the power of publicly available single cell RNA sequencing experiments to annotate new experiments. | 2018-11-01 | 10.1371/journal.pone.0208349 | 2 | view | |
| Valdes-Mora | Front Immunol | Single-Cell Transcriptomics in Cancer Immunobiology: The Future of Precision Oncology. | 2018-11-01 | 10.3389/fimmu.2018.02582 | 24 | view | |
| Ye | Kidney Dis (Basel) | Understanding the Biology and Pathogenesis of the Kidney by Single-Cell Transcriptomic Analysis. | 2018-11-01 | 10.1159/000492470 | view | ||
| Ronen | F1000Res | netSmooth: Network-smoothing based imputation for single cell RNA-seq. | 2018-11-01 | 10.12688/f1000research.13511.2 | 23 | view | |
| Duò | F1000Res | A systematic performance evaluation of clustering methods for single-cell RNA-seq data. | 2018-11-01 | 10.12688/f1000research.15666.3 | view | ||
| Hosoya | J. Immunol. | High-Throughput Single-Cell Sequencing of both TCR-β Alleles. | 2018-10-31 | 10.4049/jimmunol.1800774 | view | ||
| Scimone | Curr. Biol. | foxF-1 Controls Specification of Non-body Wall Muscle and Phagocytic Cells in Planarians. | 2018-10-31 | 10.1016/j.cub.2018.10.030 | 4 | view | |
| Ackers-Johnson | Nat Commun | Following hearts, one cell at a time: recent applications of single-cell RNA sequencing to the understanding of heart disease. | 2018-10-30 | 10.1038/s41467-018-06894-8 | 8 | view | |
| Cembrowski | Elife | The subiculum is a patchwork of discrete subregions. | 2018-10-30 | 10.7554/eLife.37701 | view | ||
| Codeluppi | Nat. Methods | Spatial organization of the somatosensory cortex revealed by osmFISH. | 2018-10-30 | 10.1038/s41592-018-0175-z | 24 | view | |
| Dominguez Gutierrez | Endocrinology | Gene Signature of the Human Pancreatic ε-Cell. | 2018-10-30 | 10.1210/en.2018-00833 | view | ||
| Zhu | Nat. Biotechnol. | Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data. | 2018-10-29 | 10.1038/nbt.4260 | 1 | view | |
| Gerber | Science | Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration. | 2018-10-26 | 10.1126/science.aaq0681 | 30 | view | |
| Kim | Circ. Res. | Transcriptome Analysis Reveals Nonfoamy Rather Than Foamy Plaque Macrophages Are Proinflammatory in Atherosclerotic Murine Models. | 2018-10-26 | 10.1161/CIRCRESAHA.118.312804 | 59 | view | |
| Tanaka | Cancer Med | Single-cell RNA-seq analysis reveals the platinum resistance gene COX7B and the surrogate marker CD63. | 2018-10-26 | 10.1002/cam4.1828 | 1 | view | |
| Biton | Cell | T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation. | 2018-10-26 | 10.1016/j.cell.2018.10.008 | 67 | view | |
| Paul | J Vis Exp | Single-cell RNA Sequencing of Fluorescently Labeled Mouse Neurons Using Manual Sorting and Double In Vitro Transcription with Absolute Counts Sequencing (DIVA-Seq). | 2018-10-26 | 10.3791/58690 | 1 | view | |
| Suber | Respir. Res. | FBXO17 promotes cell proliferation through activation of Akt in lung adenocarcinoma cells. | 2018-10-25 | 10.1186/s12931-018-0910-0 | 1 | view | |
| Sommarin | J Vis Exp | A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations. | 2018-10-25 | 10.3791/57831 | view | ||
| Fan | J. Exp. Med. | CD49b defines functionally mature Treg cells that survey skin and vascular tissues. | 2018-10-24 | 10.1084/jem.20181442 | 10 | view | |
| Hagai | Nature | Gene expression variability across cells and species shapes innate immunity. | 2018-10-24 | 10.1038/s41586-018-0657-2 | 39 | view | |
| Athar | Nucleic Acids Res. | ArrayExpress update - from bulk to single-cell expression data. | 2018-10-24 | 10.1093/nar/gky964 | 53 | view | |
| Raj | Nat Protoc | Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR-Cas9 barcodes by scGESTALT. | 2018-10-23 | 10.1038/s41596-018-0058-x | 15 | view | |
| Mok | Cell Rep | More Than the Sum of Its Parts: Single-Cell Transcriptomics Reveals Epidermal Cell States. | 2018-10-23 | 10.1016/j.celrep.2018.10.041 | 1 | view | |
| Cheng | Cell Rep | Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution. | 2018-10-23 | 10.1016/j.celrep.2018.09.006 | 42 | view | |
| Liu | PLoS Biol. | Quantitative assessment of cell population diversity in single-cell landscapes. | 2018-10-22 | 10.1371/journal.pbio.2006687 | 1 | view | |
| MacParland | Nat Commun | Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations. | 2018-10-22 | 10.1038/s41467-018-06318-7 | 127 | view | |
| Graham | Nat. Med. | Antigen discovery and specification of immunodominance hierarchies for MHCII-restricted epitopes. | 2018-10-22 | 10.1038/s41591-018-0203-7 | 12 | view | |
| D'Gama | Nat. Neurosci. | Somatic mosaicism and neurodevelopmental disease. | 2018-10-22 | 10.1038/s41593-018-0257-3 | view | ||
| Yuan | Nucleic Acids Res. | CancerSEA: a cancer single-cell state atlas. | 2018-10-17 | 10.1093/nar/gky939 | 18 | view | |
| Xiao | Genome Biol. | Holo-Seq: single-cell sequencing of holo-transcriptome. | 2018-10-17 | 10.1186/s13059-018-1553-7 | 2 | view | |
| Müller | Nature | Genome organization and DNA accessibility control antigenic variation in trypanosomes. | 2018-10-17 | 10.1038/s41586-018-0619-8 | 36 | view | |
| Cheung | Endocrinology | Single-cell RNA sequencing reveals novel markers of male pituitary stem cells and hormone-producing cell-types. | 2018-10-17 | 10.1210/en.2018-00750 | 5 | view | |
| Joost | Cell Rep | Single-Cell Transcriptomics of Traced Epidermal and Hair Follicle Stem Cells Reveals Rapid Adaptations during Wound Healing. | 2018-10-16 | 10.1016/j.celrep.2018.09.059 | 2 | view | |
| Gubin | Cell | High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy. | 2018-10-16 | 10.1016/j.cell.2018.09.030 | 62 | view | |
| Subramanian Parimalam | Anal. Chem. | Electrical Lysis and RNA Extraction from Single Cells Fixed by Dithiobis(succinimidyl propionate). | 2018-10-16 | 10.1021/acs.analchem.8b02338 | view | ||
| Liu | Cancer Res. | Circulating glioma cells exhibit stem cell-like properties. | 2018-10-15 | 10.1158/0008-5472.CAN-18-0650 | 17 | view | |
| Marie | Proc. Natl. Acad. Sci. U.S.A. | Single-molecule DNA-mapping and whole-genome sequencing of individual cells. | 2018-10-15 | 10.1073/pnas.1804194115 | 6 | view | |
| Owen | Nat Commun | Single cell RNA-seq reveals profound transcriptional similarity between Barrett's oesophagus and oesophageal submucosal glands. | 2018-10-15 | 10.1038/s41467-018-06796-9 | view | ||
| Guo | Cell Res. | The adult human testis transcriptional cell atlas. | 2018-10-12 | 10.1038/s41422-018-0099-2 | 95 | view | |
| Molenaar | Circ. Res. | Single-Cell Sequencing of the Mammalian Heart. | 2018-10-12 | 10.1161/CIRCRESAHA.118.313531 | 5 | view | |
| Matson | J Vis Exp | Isolation of Adult Spinal Cord Nuclei for Massively Parallel Single-nucleus RNA Sequencing. | 2018-10-12 | 10.3791/58413 | view | ||
| Ó hAinmhire | Am. J. Physiol. Renal Physiol. | A conditionally immortalized Gli1-positive kidney mesenchymal cell line models myofibroblast transition. | 2018-10-10 | 10.1152/ajprenal.00460.2018 | view | ||
| Gao | Analyst | Recent advances in single cell manipulation and biochemical analysis on microfluidics. | 2018-10-09 | 10.1039/c8an01186a | 25 | view | |
| Sharma | Mol. Immunol. | Using single cell analysis for translational studies in immune mediated diseases: Opportunities and challenges. | 2018-10-06 | 10.1016/j.molimm.2018.09.020 | 3 | view | |
| Shi | Brief. Bioinformatics | Quantifying Waddington's epigenetic landscape: a comparison of single-cell potency measures. | 2018-10-05 | 10.1093/bib/bby093 | view | ||
| Zhang | Nucleic Acids Res. | CellMarker: a manually curated resource of cell markers in human and mouse. | 2018-10-05 | 10.1093/nar/gky900 | 57 | view | |
| Manh Nguyen | Appl. Environ. Microbiol. | Effective soil extraction method for cultivating previously uncultured soil bacteria. | 2018-10-05 | 10.1128/AEM.01145-18 | view | ||
| Upadhaya | J. Exp. Med. | Kinetics of adult hematopoietic stem cell differentiation in vivo. | 2018-10-05 | 10.1084/jem.20180136 | 16 | view | |
| Kilian | J. Biol. Chem. | Role of phospholipid synthesis in the development and differentiation of malaria parasites in the blood. | 2018-10-04 | 10.1074/jbc.R118.003213 | view | ||
| Svensson | Mol. Cell | RNA Velocity: Molecular Kinetics from Single-Cell RNA-Seq. | 2018-10-04 | 10.1016/j.molcel.2018.09.026 | 8 | view | |
| Boulais | Immunity | The Majority of CD45- Ter119- CD31- Bone Marrow Cell Fraction Is of Hematopoietic Origin and Contains Erythroid and Lymphoid Progenitors. | 2018-10-04 | 10.1016/j.immuni.2018.08.019 | 7 | view | |
| Wurmus | Gigascience | PiGx: Reproducible genomics analysis pipelines with GNU Guix. | 2018-10-02 | 10.1093/gigascience/giy123 | 11 | view | |
| Bradley | Cell Rep | Single-Cell Analysis of Quiescent HIV Infection Reveals Host Transcriptional Profiles that Regulate Proviral Latency. | 2018-10-02 | 10.1016/j.celrep.2018.09.020 | 14 | view | |
| Bryan | Hum. Mol. Genet. | Identifying core biological processes distinguishing human eye tissues with precise systems-level gene expression analyses and weighted correlation networks. | 2018-10-01 | 10.1093/hmg/ddy239 | 6 | view | |
| Peng | F1000Res | Regulatory network characterization in development: challenges and opportunities. | 2018-10-01 | 10.12688/f1000research.15271.1 | view | ||
| Cho | Lett Biomath | Modelling acute myeloid leukaemia in a continuum of differentiation states. | 2018-10-01 | 10.1080/23737867.2018.1472532 | 7 | view | |
| Liang | Comput Struct Biotechnol J | A Review of Matched-pairs Feature Selection Methods for Gene Expression Data Analysis. | 2018-10-01 | 10.1016/j.csbj.2018.02.005 | 13 | view | |
| Guo | Nat. Med. | Publisher Correction: Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing. | 2018-10-01 | 10.1038/s41591-018-0167-7 | 5 | view | |
| Lieberman | PLoS ONE | CaSTLe - Classification of single cells by transfer learning: Harnessing the power of publicly available single cell RNA sequencing experiments to annotate new experiments. | 2018-10-01 | 10.1371/journal.pone.0205499 | 19 | view | |
| Apostolidis | Front Immunol | Single Cell RNA Sequencing Identifies HSPG2 and APLNR as Markers of Endothelial Cell Injury in Systemic Sclerosis Skin. | 2018-10-01 | 10.3389/fimmu.2018.02191 | 4 | view | |
| Mays | PLoS ONE | Single-cell RNA sequencing of the mammalian pineal gland identifies two pinealocyte subtypes and cell type-specific daily patterns of gene expression. | 2018-10-01 | 10.1371/journal.pone.0205883 | 14 | view | |
| Tripathy | Front Mol Neurosci | Assessing Transcriptome Quality in Patch-Seq Datasets. | 2018-10-01 | 10.3389/fnmol.2018.00363 | view | ||
| Qiu | Nat. Med. | Renal compartment-specific genetic variation analyses identify new pathways in chronic kidney disease. | 2018-10-01 | 10.1038/s41591-018-0194-4 | 7 | view | |
| Bresciani | MethodsX | An efficient dissociation protocol for generation of single cell suspension from zebrafish embryos and larvae. | 2018-10-01 | 10.1016/j.mex.2018.10.009 | 8 | view | |
| Suryawanshi | Sci Adv | A single-cell survey of the human first-trimester placenta and decidua. | 2018-10-01 | 10.1126/sciadv.aau4788 | 38 | view | |
| Mah | F1000Res | An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data. | 2018-10-01 | 10.12688/f1000research.15830.1 | view | ||
| Konstantinides | Curr Opin Syst Biol | Neuro-evo-devo in the single cell sequencing era. | 2018-10-01 | 10.1016/j.coisb.2018.08.001 | view | ||
| Schmidt | Cardiovasc. Res. | Single-cell transcriptomics in embryology: implications for cardiovascular science. | 2018-10-01 | 10.1093/cvr/cvy193 | view | ||
| Martinez Ramirez | Ann. Oncol. | Single-cell RNA sequencing of triple negative breast cancer patient-derived xenograft reveals distinct cellular populations spatially mapped to histological sections. | 2018-10-01 | 10.1093/annonc/mdy304.002 | view | ||
| Li | J Vis Exp | Single-cell Transcriptomic Analyses of Mouse Pancreatic Endocrine Cells. | 2018-09-30 | 10.3791/58000 | view | ||
| Chambers | Respirology | Transcriptomics and single-cell RNA-sequencing. | 2018-09-28 | 10.1111/resp.13412 | 6 | view | |
| Hepler | Elife | Identification of functionally distinct fibro-inflammatory and adipogenic stromal subpopulations in visceral adipose tissue of adult mice. | 2018-09-28 | 10.7554/eLife.39636 | 32 | view | |
| Nirmal | Cancer Immunol Res | Immune cell gene signatures for profiling the microenvironment of solid tumors. | 2018-09-28 | 10.1158/2326-6066.CIR-18-0342 | 18 | view | |
| Meilhac | Nat Rev Cardiol | The deployment of cell lineages that form the mammalian heart. | 2018-09-28 | 10.1038/s41569-018-0086-9 | 1 | view | |
| Biase | iScience | Rainbow-Seq: Combining Cell Lineage Tracing with Single-Cell RNA Sequencing in Preimplantation Embryos. | 2018-09-28 | 10.1016/j.isci.2018.08.009 | view | ||
| Daniszewski | iScience | Single-Cell Profiling Identifies Key Pathways Expressed by iPSCs Cultured in Different Commercial Media. | 2018-09-28 | 10.1016/j.isci.2018.08.016 | 2 | view | |
| Cohen | Cell | Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting. | 2018-09-28 | 10.1016/j.cell.2018.09.009 | 108 | view | |
| Ranu | Nucleic Acids Res. | Targeting individual cells by barcode in pooled sequence libraries. | 2018-09-26 | 10.1093/nar/gky856 | 3 | view | |
| Tischler | EMBO J. | Metabolic regulation of pluripotency and germ cell fate through α-ketoglutarate. | 2018-09-26 | 10.15252/embj.201899518 | 9 | view | |
| Arneson | Nat Commun | Single cell molecular alterations reveal target cells and pathways of concussive brain injury. | 2018-09-25 | 10.1038/s41467-018-06222-0 | view | ||
| Byrnes | Nat Commun | Lineage dynamics of murine pancreatic development at single-cell resolution. | 2018-09-25 | 10.1038/s41467-018-06176-3 | 33 | view | |
| Pezoldt | Nat Commun | Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes. | 2018-09-25 | 10.1038/s41467-018-06423-7 | 6 | view | |
| Wang | Cell Rep | Dissecting the Global Dynamic Molecular Profiles of Human Fetal Kidney Development by Single-Cell RNA Sequencing. | 2018-09-25 | 10.1016/j.celrep.2018.08.056 | 33 | view | |
| Avey | Cell Rep | Single-Cell RNA-Seq Uncovers a Robust Transcriptional Response to Morphine by Glia. | 2018-09-25 | 10.1016/j.celrep.2018.08.080 | 25 | view | |
| Paulson | Nat Commun | Acquired cancer resistance to combination immunotherapy from transcriptional loss of class I HLA. | 2018-09-24 | 10.1038/s41467-018-06300-3 | 35 | view | |
| AlJanahi | Mol Ther Methods Clin Dev | An Introduction to the Analysis of Single-Cell RNA-Sequencing Data. | 2018-09-21 | 10.1016/j.omtm.2018.07.003 | 33 | view | |
| Jin | JCI Insight | Chronic infection stunts macrophage heterogeneity and disrupts immune-mediated myogenesis. | 2018-09-20 | 10.1172/jci.insight.121549 | 8 | view | |
| Farhadian | JCI Insight | Single-cell RNA sequencing reveals microglia-like cells in cerebrospinal fluid during virologically suppressed HIV. | 2018-09-20 | 10.1172/jci.insight.121718 | 15 | view | |
| Florian | PLoS Biol. | Aging alters the epigenetic asymmetry of HSC division. | 2018-09-20 | 10.1371/journal.pbio.2003389 | 12 | view | |
| Leung | Genome Med | Single-cell transcriptomics reveal that PD-1 mediates immune tolerance by regulating proliferation of regulatory T cells. | 2018-09-20 | 10.1186/s13073-018-0581-y | 6 | view | |
| Elias | J. Pathol. | Primordial germ cells as a potential shared cell of origin for mucinous cystic neoplasms of the pancreas and mucinous ovarian tumors. | 2018-09-19 | 10.1002/path.5161 | 4 | view | |
| Tong | Cancer Commun (Lond) | Transcriptomic but not genomic variability confers phenotype of breast cancer stem cells. | 2018-09-19 | 10.1186/s40880-018-0326-8 | 2 | view | |
| Song | Sci Rep | Genetic and scRNA-seq Analysis Reveals Distinct Cell Populations that Contribute to Salivary Gland Development and Maintenance. | 2018-09-19 | 10.1038/s41598-018-32343-z | 17 | view | |
| Horie | Genes Dev. | Regulatory cocktail for dopaminergic neurons in a protovertebrate identified by whole-embryo single-cell transcriptomics. | 2018-09-18 | 10.1101/gad.317669.118 | 10 | view | |
| Shang | Gigascience | Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation. | 2018-09-18 | 10.1093/gigascience/giy117 | 1 | view | |
| Lindström | Am. J. Kidney Dis. | Single-Cell RNA Sequencing of the Adult Mouse Kidney: From Molecular Cataloging of Cell Types to Disease-Associated Predictions. | 2018-09-18 | 10.1053/j.ajkd.2018.07.002 | 2 | view | |
| Halpern | Nat. Biotechnol. | Paired-cell sequencing enables spatial gene expression mapping of liver endothelial cells. | 2018-09-17 | 10.1038/nbt.4231 | 3 | view | |
| Cunha | Cell | LC3-Associated Phagocytosis in Myeloid Cells Promotes Tumor Immune Tolerance. | 2018-09-17 | 10.1016/j.cell.2018.08.061 | 58 | view | |
| Wu | Cancer Lett. | Single-cell RNA sequencing reveals diverse intratumoral heterogeneities and gene signatures of two types of esophageal cancers. | 2018-09-14 | 10.1016/j.canlet.2018.09.017 | 7 | view | |
| Zeng | Stem Cell Res Ther | Revealing cellular and molecular complexity of the central nervous system using single cell sequencing. | 2018-09-13 | 10.1186/s13287-018-0985-z | 6 | view | |
| Petitpré | Nat Commun | Neuronal heterogeneity and stereotyped connectivity in the auditory afferent system. | 2018-09-12 | 10.1038/s41467-018-06033-3 | 18 | view | |
| Duan | Neuron | PDGFRβ Cells Rapidly Relay Inflammatory Signal from the Circulatory System to Neurons via Chemokine CCL2. | 2018-09-12 | 10.1016/j.neuron.2018.08.030 | 12 | view | |
| Lukassen | Sci Data | Single-cell RNA sequencing of adult mouse testes. | 2018-09-11 | 10.1038/sdata.2018.192 | 1 | view | |
| Grootens | Blood Adv | Deciphering the differentiation trajectory from hematopoietic stem cells to mast cells. | 2018-09-11 | 10.1182/bloodadvances.2018019539 | 12 | view | |
| Sousa | EMBO Rep. | Single-cell transcriptomics reveals distinct inflammation-induced microglia signatures. | 2018-09-11 | 10.15252/embr.201846171 | 17 | view | |
| Costa | Nat Commun | GraphDDP: a graph-embedding approach to detect differentiation pathways in single-cell-data using prior class knowledge. | 2018-09-11 | 10.1038/s41467-018-05988-7 | 2 | view | |
| Li | Stem Cells Transl Med | Generation of Functional Hepatocytes from Human Adipose-Derived MYC+ KLF4+ GMNN+ Stem Cells Analyzed by Single-Cell RNA-Seq Profiling. | 2018-09-11 | 10.1002/sctm.17-0273 | view | ||
| Gruber | Nat. Methods | Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms. | 2018-09-10 | 10.1038/s41592-018-0114-z | 3 | view | |
| Sloan | Nat Protoc | Generation and assembly of human brain region-specific three-dimensional cultures. | 2018-09-10 | 10.1038/s41596-018-0032-7 | 2 | view | |
| Carter | Curr. Biol. | A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum. | 2018-09-10 | 10.1016/j.cub.2018.07.062 | 47 | view | |
| Yang | Bioinformatics | SAFE-clustering: Single-cell Aggregated (From Ensemble) Clustering for Single-cell RNA-seq Data. | 2018-09-08 | 10.1093/bioinformatics/bty793 | 22 | view | |
| Birnbaum | Annu. Rev. Genet. | Power in Numbers: Single-Cell RNA-Seq Strategies to Dissect Complex Tissues. | 2018-09-07 | 10.1146/annurev-genet-120417-031247 | 25 | view | |
| Gokey | JCI Insight | MEG3 is increased in idiopathic pulmonary fibrosis and regulates epithelial cell differentiation. | 2018-09-06 | 10.1172/jci.insight.122490 | 8 | view | |
| Sabbagh | Elife | Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells. | 2018-09-06 | 10.7554/eLife.36187 | 3 | view | |
| Fan | Dev. Cell | Single Cell and Open Chromatin Analysis Reveals Molecular Origin of Epidermal Cells of the Skin. | 2018-09-06 | 10.1016/j.devcel.2018.08.010 | 14 | view | |
| Volpato | Stem Cell Reports | Reproducibility of Molecular Phenotypes after Long-Term Differentiation to Human iPSC-Derived Neurons: A Multi-Site Omics Study. | 2018-09-06 | 10.1016/j.stemcr.2018.08.013 | 24 | view | |
| Tay | Acta Neuropathol Commun | Unique microglia recovery population revealed by single-cell RNAseq following neurodegeneration. | 2018-09-05 | 10.1186/s40478-018-0584-3 | 14 | view | |
| Chiu | Development | A novel role for Lyl1 in primitive erythropoiesis. | 2018-09-05 | 10.1242/dev.162990 | view | ||
| Karaayvaz | Nat Commun | Unravelling subclonal heterogeneity and aggressive disease states in TNBC through single-cell RNA-seq. | 2018-09-04 | 10.1038/s41467-018-06052-0 | 34 | view | |
| Sena | Sci Rep | Unique Molecular Identifiers reveal a novel sequencing artefact with implications for RNA-Seq based gene expression analysis. | 2018-09-03 | 10.1038/s41598-018-31064-7 | 8 | view | |
| Kadnikov | Syst. Appl. Microbiol. | Phylogeny and physiology of candidate phylum BRC1 inferred from the first complete metagenome-assembled genome obtained from deep subsurface aquifer. | 2018-09-03 | 10.1016/j.syapm.2018.08.013 | 2 | view | |
| Lythe | Immunol. Rev. | Some deterministic and stochastic mathematical models of naïve T-cell homeostasis. | 2018-09-01 | 10.1111/imr.12696 | 1 | view | |
| Camp | Nat. Methods | Single-cell genomics to guide human stem cell and tissue engineering. | 2018-09-01 | 10.1038/s41592-018-0113-0 | 8 | view | |
| Bloom | PeerJ | Estimating the frequency of multiplets in single-cell RNA sequencing from cell-mixing experiments. | 2018-09-01 | 10.7717/peerj.5578 | view | ||
| Mars Brisbin | Front Microbiol | Intra-host Symbiont Diversity and Extended Symbiont Maintenance in Photosymbiotic Acantharea (Clade F). | 2018-09-01 | 10.3389/fmicb.2018.01998 | view | ||
| Nguyen | Front Cell Dev Biol | Experimental Considerations for Single-Cell RNA Sequencing Approaches. | 2018-09-01 | 10.3389/fcell.2018.00108 | 2 | view | |
| Vanlandewijck | Methods Mol. Biol. | Single-Cell mRNA Sequencing of the Mouse Brain Vasculature. | 2018-09-01 | 10.1007/978-1-4939-8712-2_21 | view | ||
| Puram | Mol Cell Oncol | Single cell RNA-seq highlights a role for a partial EMT in head and neck cancer. | 2018-09-01 | 10.1080/23723556.2018.1448244 | 1 | view | |
| El-Kebir | Bioinformatics | SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error. | 2018-09-01 | 10.1093/bioinformatics/bty589 | 31 | view | |
| Miura | Bioinformatics | Computational enhancement of single-cell sequences for inferring tumor evolution. | 2018-09-01 | 10.1093/bioinformatics/bty571 | view | ||
| Guvenek | Quant Biol | Analysis of alternative cleavage and polyadenylation in mature and differentiating neurons using RNA-seq data. | 2018-09-01 | 10.1007/s40484-018-0148-3 | 3 | view | |
| Brancucci | Probing Plasmodium falciparum sexual commitment at the single-cell level. | 2018-09-01 | 10.12688/wellcomeopenres.14645.3 | view | |||
| Menon | Development | Single-cell analysis of progenitor cell dynamics and lineage specification in the human fetal kidney. | 2018-08-30 | 10.1242/dev.164038 | 40 | view | |
| Klum | EMBO Rep. | Sequentially acting SOX proteins orchestrate astrocyte- and oligodendrocyte-specific gene expression. | 2018-08-30 | 10.15252/embr.201846635 | 7 | view | |
| Cacchiarelli | Cell Syst | Aligning Single-Cell Developmental and Reprogramming Trajectories Identifies Molecular Determinants of Myogenic Reprogramming Outcome. | 2018-08-30 | 10.1016/j.cels.2018.07.006 | 21 | view | |
| Buus | Blood Adv | Single-cell heterogeneity in Sézary syndrome. | 2018-08-28 | 10.1182/bloodadvances.2018022608 | 9 | view | |
| Liu | Genome Res. | Single cell RNA-sequencing reveals the existence of naïve and primed pluripotency in pre-implantation rhesus monkey embryos. | 2018-08-28 | 10.1101/gr.233437.117 | view | ||
| Brummelman | J. Exp. Med. | High-dimensional single cell analysis identifies stem-like cytotoxic CD8+ T cells infiltrating human tumors. | 2018-08-28 | 10.1084/jem.20180684 | view | ||
| Zhu | Cell Rep | Identification of an Early Unipotent Neutrophil Progenitor with Pro-tumoral Activity in Mouse and Human Bone Marrow. | 2018-08-28 | 10.1016/j.celrep.2018.07.097 | 2 | view | |
| Karki | Cell Rep | Regulated Capture of Vκ Gene Topologically Associating Domains by Transcription Factories. | 2018-08-28 | 10.1016/j.celrep.2018.07.091 | 2 | view | |
| Hu | Blood | A cloning and expression system to probe T cell receptor specificity and assess functional avidity to neoantigens. | 2018-08-27 | 10.1182/blood-2018-04-843763 | 17 | view | |
| Swapna | Genome Biol. | Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation. | 2018-08-24 | 10.1186/s13059-018-1498-x | 7 | view | |
| Wang | Cell Stem Cell | Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis. | 2018-08-24 | 10.1016/j.stem.2018.08.007 | 8 | view | |
| Habiel | JCI Insight | CCR10+ epithelial cells from idiopathic pulmonary fibrosis lungs drive remodeling. | 2018-08-23 | 10.1172/jci.insight.122211 | view | ||
| Wu | BMC Genomics | Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos. | 2018-08-23 | 10.1186/s12864-018-5021-2 | 1 | view | |
| Crow | Trends Genet. | Co-expression in Single-Cell Analysis: Saving Grace or Original Sin? | 2018-08-23 | 10.1016/j.tig.2018.07.007 | 8 | view | |
| Lall | J. Comput. Biol. | Structure-Aware Principal Component Analysis for Single-Cell RNA-seq Data. | 2018-08-22 | 10.1089/cmb.2018.0027 | 1 | view | |
| Scavuzzo | Nat Commun | Endocrine lineage biases arise in temporally distinct endocrine progenitors during pancreatic morphogenesis. | 2018-08-22 | 10.1038/s41467-018-05740-1 | 20 | view | |
| Kim | Brief. Bioinformatics | Impact of similarity metrics on single-cell RNA-seq data clustering. | 2018-08-22 | 10.1093/bib/bby076 | 25 | view | |
| He | Sci Data | Single-cell RNA sequencing of mouse brain and lung vascular and vessel-associated cell types. | 2018-08-21 | 10.1038/sdata.2018.160 | 3 | view | |
| Muñoz-Manchado | Cell Rep | Diversity of Interneurons in the Dorsal Striatum Revealed by Single-Cell RNA Sequencing and PatchSeq. | 2018-08-21 | 10.1016/j.celrep.2018.07.053 | 41 | view | |
| Green | Dev. Cell | A Comprehensive Roadmap of Murine Spermatogenesis Defined by Single-Cell RNA-Seq. | 2018-08-21 | 10.1016/j.devcel.2018.07.025 | 68 | view | |
| Wimmers | Nat Commun | Single-cell analysis reveals that stochasticity and paracrine signaling control interferon-alpha production by plasmacytoid dendritic cells. | 2018-08-20 | 10.1038/s41467-018-05784-3 | 30 | view | |
| Chen | Protein Cell | Dgcr8 deletion in the primitive heart uncovered novel microRNA regulating the balance of cardiac-vascular gene program. | 2018-08-20 | 10.1007/s13238-018-0572-1 | view | ||
| Hines | Protist | Molecular Investigation of the Ciliate Spirostomum semivirescens, with First Transcriptome and New Geographical Records. | 2018-08-20 | 10.1016/j.protis.2018.08.001 | 5 | view | |
| Mazza | Cytometry A | Background fluorescence and spreading error are major contributors of variability in high-dimensional flow cytometry data visualization by t-distributed stochastic neighboring embedding. | 2018-08-14 | 10.1002/cyto.a.23566 | 14 | view | |
| Vanuytsel | Blood Adv | Induced pluripotent stem cell-based mapping of β-globin expression throughout human erythropoietic development. | 2018-08-14 | 10.1182/bloodadvances.2018020560 | 7 | view | |
| Balan | Cell Rep | Large-Scale Human Dendritic Cell Differentiation Revealing Notch-Dependent Lineage Bifurcation and Heterogeneity. | 2018-08-14 | 10.1016/j.celrep.2018.07.033 | 4 | view | |
| Zhang | PLoS Comput. Biol. | SILGGM: An extensive R package for efficient statistical inference in large-scale gene networks. | 2018-08-13 | 10.1371/journal.pcbi.1006369 | 14 | view | |
| Kim | Sci Rep | In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells. | 2018-08-13 | 10.1038/s41598-018-30551-1 | 3 | view | |
| Moussa | BMC Genomics | Single cell RNA-seq data clustering using TF-IDF based methods. | 2018-08-13 | 10.1186/s12864-018-4922-4 | 12 | view | |
| Tian | PLoS Comput. Biol. | scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data. | 2018-08-10 | 10.1371/journal.pcbi.1006361 | 21 | view | |
| Oldham | Cell | Sequencing Diversity One Cell at a Time. | 2018-08-09 | 10.1016/j.cell.2018.07.024 | 3 | view | |
| La Manno | Nature | RNA velocity of single cells. | 2018-08-08 | 10.1038/s41586-018-0414-6 | view | ||
| Kim | Nucleic Acids Res. | CellBIC: bimodality-based top-down clustering of single-cell RNA sequencing data reveals hierarchical structure of the cell type. | 2018-08-08 | 10.1093/nar/gky698 | 5 | view | |
| Pellegrino | Genome Res. | High-throughput single-cell DNA sequencing of acute myeloid leukemia tumors with droplet microfluidics. | 2018-08-07 | 10.1101/gr.232272.117 | 52 | view | |
| Hwang | Exp. Mol. Med. | Single-cell RNA sequencing technologies and bioinformatics pipelines. | 2018-08-07 | 10.1038/s12276-018-0071-8 | 20 | view | |
| Ngara | Exp. Cell Res. | Exploring parasite heterogeneity using single-cell RNA-seq reveals a gene signature among sexual stage Plasmodium falciparum parasites. | 2018-08-07 | 10.1016/j.yexcr.2018.08.003 | 6 | view | |
| Yu | PLoS Comput. Biol. | A new dynamic correlation algorithm reveals novel functional aspects in single cell and bulk RNA-seq data. | 2018-08-06 | 10.1371/journal.pcbi.1006391 | 5 | view | |
| Li | Mol. Cancer Res. | Dissecting lncRNA Roles in Renal Cell Carcinoma Metastasis and Characterizing Genomic Heterogeneity by Single-cell RNA-seq. | 2018-08-06 | 10.1158/1541-7786.MCR-17-0776 | 6 | view | |
| McDonald | Cell Stem Cell | Endothelial Regeneration of Large Vessels Is a Biphasic Process Driven by Local Cells with Distinct Proliferative Capacities. | 2018-08-02 | 10.1016/j.stem.2018.07.011 | 34 | view | |
| Elion | Trends Mol Med | Genetic and Phenotypic Diversification of Heterogeneous Tumor Populations. | 2018-08-01 | 10.1016/j.molmed.2018.06.003 | view | ||
| Lindeman | Nat. Methods | BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq. | 2018-08-01 | 10.1038/s41592-018-0082-3 | 30 | view | |
| Nawy | Nat. Methods | Tumor genetic analysis from single-cell RNA-seq data. | 2018-08-01 | 10.1038/s41592-018-0089-9 | 1 | view | |
| Montoro | Nature | A revised airway epithelial hierarchy includes CFTR-expressing ionocytes. | 2018-08-01 | 10.1038/s41586-018-0393-7 | 191 | view | |
| Horie | Nature | Shared evolutionary origin of vertebrate neural crest and cranial placodes. | 2018-08-01 | 10.1038/s41586-018-0385-7 | 12 | view | |
| Lee | Nature | Human glioblastoma arises from subventricular zone cells with low-level driver mutations. | 2018-08-01 | 10.1038/s41586-018-0389-3 | 74 | view | |
| De Simone | Front Immunol | Single Cell T Cell Receptor Sequencing: Techniques and Future Challenges. | 2018-08-01 | 10.3389/fimmu.2018.01638 | view | ||
| Schalck | Trends Mol Med | Resident Breast T Cells: The Troops Are Already There. | 2018-08-01 | 10.1016/j.molmed.2018.07.006 | view | ||
| Marques | Dev. Cell | Transcriptional Convergence of Oligodendrocyte Lineage Progenitors during Development. | 2018-08-01 | 10.1016/j.devcel.2018.07.005 | 56 | view | |
| Roy | Sci Adv | Accelerating a paradigm shift: The Common Fund Single Cell Analysis Program. | 2018-08-01 | 10.1126/sciadv.aat8573 | 4 | view | |
| Sampath | Front Immunol | Monocyte Subsets: Phenotypes and Function in Tuberculosis Infection. | 2018-08-01 | 10.3389/fimmu.2018.01726 | 30 | view | |
| Parsons | Mutat. Res. | Multiclonal tumor origin: Evidence and implications. | 2018-08-01 | 10.1016/j.mrrev.2018.05.001 | 11 | view | |
| Kramer | eNeuro | Combinatorial Expression of Grp and Neurod6 Defines Dopamine Neuron Populations with Distinct Projection Patterns and Disease Vulnerability. | 2018-08-01 | 10.1523/ENEURO.0152-18.2018 | 8 | view | |
| van den Hurk | Front Mol Neurosci | Patch-Seq Protocol to Analyze the Electrophysiology, Morphology and Transcriptome of Whole Single Neurons Derived From Human Pluripotent Stem Cells. | 2018-08-01 | 10.3389/fnmol.2018.00261 | view | ||
| Simpson | Hum. Gene Ther. | New MiniPromoter Ple345 (NEFL) Drives Strong and Specific Expression in Retinal Ganglion Cells of Mouse and Primate Retina. | 2018-07-31 | 10.1089/hum.2018.118 | 1 | view | |
| Yamashita | PLoS Genet. | High-resolution transcriptional dissection of in vivo Atoh1-mediated hair cell conversion in mature cochleae identifies Isl1 as a co-reprogramming factor. | 2018-07-31 | 10.1371/journal.pgen.1007552 | view | ||
| Ho | Genome Res. | Single-cell RNA-seq analysis identifies markers of resistance to targeted BRAF inhibitors in melanoma cell populations. | 2018-07-30 | 10.1101/gr.234062.117 | 21 | view | |
| Chen | Cell Res. | Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis. | 2018-07-30 | 10.1038/s41422-018-0074-y | 33 | view | |
| Tao | Biomed. Pharmacother. | Inhibition of EP300 and DDR1 synergistically alleviates pulmonary fibrosis in vitro and in vivo. | 2018-07-30 | 10.1016/j.biopha.2018.07.132 | 5 | view | |
| Salehi | Hear. Res. | Detection of single mRNAs in individual cells of the auditory system. | 2018-07-29 | 10.1016/j.heares.2018.07.008 | view | ||
| Spangler | Stem Cell Res | A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo. | 2018-07-29 | 10.1016/j.scr.2018.07.022 | view | ||
| Shrestha | Cell | Sensory Neuron Diversity in the Inner Ear Is Shaped by Activity. | 2018-07-28 | 10.1016/j.cell.2018.07.007 | 59 | view | |
| Dziewulska | Genes (Basel) | High-Throughput Approaches onto Uncover (Epi)Genomic Architecture of Type 2 Diabetes. | 2018-07-26 | 10.3390/genes9080374 | 7 | view | |
| Bagnoli | Nat Commun | Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq. | 2018-07-26 | 10.1038/s41467-018-05347-6 | 27 | view | |
| Sadahiro | Cell Stem Cell | Tbx6 Induces Nascent Mesoderm from Pluripotent Stem Cells and Temporally Controls Cardiac versus Somite Lineage Diversification. | 2018-07-26 | 10.1016/j.stem.2018.07.001 | 11 | view | |
| Strauß | Bioinformatics | GPseudoRank: a permutation sampler for single cell orderings. | 2018-07-25 | 10.1093/bioinformatics/bty664 | 6 | view | |
| Gracz | Gastroenterology | SOX4 Promotes ATOH1-independent Intestinal Secretory Differentiation Toward Tuft and Enteroendocrine Fates. | 2018-07-25 | 10.1053/j.gastro.2018.07.023 | 15 | view | |
| Liu | Micromachines (Basel) | The Development of an Effective Bacterial Single-Cell Lysis Method Suitable for Whole Genome Amplification in Microfluidic Platforms. | 2018-07-25 | 10.3390/mi9080367 | 6 | view | |
| Yuan | Genome Med | Single-cell transcriptome analysis of lineage diversity in high-grade glioma. | 2018-07-24 | 10.1186/s13073-018-0567-9 | 22 | view | |
| Liu | Cell Res. | Single-cell RNA-seq reveals the diversity of trophoblast subtypes and patterns of differentiation in the human placenta. | 2018-07-24 | 10.1038/s41422-018-0066-y | 27 | view | |
| Severo | Proc. Natl. Acad. Sci. U.S.A. | Unbiased classification of mosquito blood cells by single-cell genomics and high-content imaging. | 2018-07-23 | 10.1073/pnas.1803062115 | 9 | view | |
| Gao | Nat. Cell Biol. | Publisher Correction: Tracing the temporal-spatial transcriptome landscapes of the human fetal digestive tract using single-cell RNA-sequencing. | 2018-07-23 | 10.1038/s41556-018-0165-5 | 3 | view | |
| Gillies | Am. J. Hum. Genet. | An eQTL Landscape of Kidney Tissue in Human Nephrotic Syndrome. | 2018-07-20 | 10.1016/j.ajhg.2018.07.004 | 40 | view | |
| Ji | Ann. Rheum. Dis. | Single-cell RNA-seq analysis reveals the progression of human osteoarthritis. | 2018-07-19 | 10.1136/annrheumdis-2017-212863 | 18 | view | |
| Lee | Semin. Cancer Biol. | Comparison of glioblastoma (GBM) molecular classification methods. | 2018-07-19 | 10.1016/j.semcancer.2018.07.006 | 25 | view | |
| Zhao | Reprod. Fertil. Dev. | Single-cell RNA sequencing reveals distinct gene expression patterns in glucose metabolism of human preimplantation embryos. | 2018-07-18 | 10.1071/RD18178 | 2 | view | |
| Bornstein | Nature | Single-cell mapping of the thymic stroma identifies IL-25-producing tuft epithelial cells. | 2018-07-18 | 10.1038/s41586-018-0346-1 | 8 | view | |
| Chen | J Transl Med | PBMC fixation and processing for Chromium single-cell RNA sequencing. | 2018-07-17 | 10.1186/s12967-018-1578-4 | 6 | view | |
| Rheaume | Nat Commun | Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes. | 2018-07-17 | 10.1038/s41467-018-05134-3 | 98 | view | |
| Lauridsen | Cell Rep | Differences in Cell Cycle Status Underlie Transcriptional Heterogeneity in the HSC Compartment. | 2018-07-17 | 10.1016/j.celrep.2018.06.057 | 1 | view | |
| Winkels | Curr. Opin. Lipidol. | Atherosclerosis in the single-cell era. | 2018-07-16 | 10.1097/MOL.0000000000000537 | view | ||
| Wang | J. Clin. Invest. | Expansion of hedgehog disrupts mesenchymal identity and induces emphysema phenotype. | 2018-07-12 | 10.1172/JCI99435 | 16 | view | |
| Kretzler | J. Am. Soc. Nephrol. | Single-Cell Sequencing the Glomerulus, Unraveling the Molecular Programs of Glomerular Filtration, One Cell at a Time. | 2018-07-12 | 10.1681/ASN.2018060626 | 2 | view | |
| Suyama | J Physiol Sci | New insight into GABAergic neurons in the hypothalamic feeding regulation. | 2018-07-12 | 10.1007/s12576-018-0622-8 | 4 | view | |
| Rulands | Cell Syst | Genome-Scale Oscillations in DNA Methylation during Exit from Pluripotency. | 2018-07-12 | 10.1016/j.cels.2018.06.012 | 27 | view | |
| Ayabe | Stem Cell Reports | Optimal Hypoxia Regulates Human iPSC-Derived Liver Bud Differentiation through Intercellular TGFB Signaling. | 2018-07-12 | 10.1016/j.stemcr.2018.06.015 | 13 | view | |
| Donlin | Arthritis Res. Ther. | Methods for high-dimensonal analysis of cells dissociated from cyropreserved synovial tissue. | 2018-07-11 | 10.1186/s13075-018-1631-y | 16 | view | |
| Packer | Trends Genet. | Single-Cell Multi-omics: An Engine for New Quantitative Models of Gene Regulation. | 2018-07-11 | 10.1016/j.tig.2018.06.001 | 25 | view | |
| Zappia | Gigascience | Clustering trees: a visualisation for evaluating clusterings at multiple resolutions. | 2018-07-11 | 10.1093/gigascience/giy083 | 5 | view | |
| Dominguez Gutierrez | Endocrinology | Gene Signature of Proliferating Human Pancreatic α-Cells. | 2018-07-11 | 10.1210/en.2018-00469 | view | ||
| Dasgupta | Biophys. J. | Single-Cell RNA Sequencing: A New Window into Cell Scale Dynamics. | 2018-07-11 | 10.1016/j.bpj.2018.07.003 | 3 | view | |
| Moroz | ACS Chem Neurosci | NeuroSystematics and Periodic System of Neurons: Model vs Reference Species at Single-cell Resolution. | 2018-07-10 | 10.1021/acschemneuro.8b00100 | 14 | view | |
| Griffiths | Nat Commun | Detection and removal of barcode swapping in single-cell RNA-seq data. | 2018-07-10 | 10.1038/s41467-018-05083-x | 19 | view | |
| Paik | Circ. Res. | Large-Scale Single-Cell RNA-Seq Reveals Molecular Signatures of Heterogeneous Populations of Human Induced Pluripotent Stem Cell-Derived Endothelial Cells. | 2018-07-09 | 10.1161/CIRCRESAHA.118.312913 | 25 | view | |
| Wu | Proc. Natl. Acad. Sci. U.S.A. | Scleral hypoxia is a target for myopia control. | 2018-07-09 | 10.1073/pnas.1721443115 | 15 | view | |
| Duren | Proc. Natl. Acad. Sci. U.S.A. | Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations. | 2018-07-09 | 10.1073/pnas.1805681115 | 30 | view | |
| Yang | Sci Immunol | Metabolic signaling directs the reciprocal lineage decisions of αβ and γδ T cells. | 2018-07-06 | 10.1126/sciimmunol.aas9818 | 18 | view | |
| Wu | J. Am. Soc. Nephrol. | Single-Cell Transcriptomics of a Human Kidney Allograft Biopsy Specimen Defines a Diverse Inflammatory Response. | 2018-07-06 | 10.1681/ASN.2018020125 | 35 | view | |
| Rambow | Cell | Toward Minimal Residual Disease-Directed Therapy in Melanoma. | 2018-07-06 | 10.1016/j.cell.2018.06.025 | 103 | view | |
| Stosch | Br. J. Haematol. | Gene mutations and clonal architecture in myelodysplastic syndromes and changes upon progression to acute myeloid leukaemia and under treatment. | 2018-07-05 | 10.1111/bjh.15461 | 7 | view | |
| Su | Nature | Single-cell analysis of early progenitor cells that build coronary arteries. | 2018-07-04 | 10.1038/s41586-018-0288-7 | 41 | view | |
| Patel | Bioinformatics | iS-CellR: a user-friendly tool for analyzing and visualizing single-cell RNA sequencing data. | 2018-07-04 | 10.1093/bioinformatics/bty517 | view | ||
| Okawa | Nat Commun | Transcriptional synergy as an emergent property defining cell subpopulation identity enables population shift. | 2018-07-03 | 10.1038/s41467-018-05016-8 | 2 | view | |
| Smithey | Proc. Natl. Acad. Sci. U.S.A. | Lifelong CMV infection improves immune defense in old mice by broadening the mobilized TCR repertoire against third-party infection. | 2018-07-02 | 10.1073/pnas.1719451115 | 17 | view | |
| Tang-Huau | Nat Commun | Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway. | 2018-07-02 | 10.1038/s41467-018-04985-0 | 5 | view | |
| Clement | Bioinformatics | AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing. | 2018-07-01 | 10.1093/bioinformatics/bty264 | 5 | view | |
| Mukherjee | Bioinformatics | Scalable preprocessing for sparse scRNA-seq data exploiting prior knowledge. | 2018-07-01 | 10.1093/bioinformatics/bty293 | 7 | view | |
| Pouyan | Bioinformatics | Random forest based similarity learning for single cell RNA sequencing data. | 2018-07-01 | 10.1093/bioinformatics/bty260 | 2 | view | |
| Borensztein | Methods Mol. Biol. | Transcriptome Profiling of Single Mouse Oocytes. | 2018-07-01 | 10.1007/978-1-4939-8603-3_7 | view | ||
| Ho | Front Cell Neurosci | A Guide to Single-Cell Transcriptomics in Adult Rodent Brain: The Medium Spiny Neuron Transcriptome Revisited. | 2018-07-01 | 10.3389/fncel.2018.00159 | 13 | view | |
| Nguyen | Front Immunol | Single Cell RNA Sequencing of Rare Immune Cell Populations. | 2018-07-01 | 10.3389/fimmu.2018.01553 | 30 | view | |
| Liang | Evid Based Complement Alternat Med | Zuo Gui Wan Alters Expression of Energy Metabolism Genes and Prevents Cell Death in High-Glucose Loaded Mouse Embryos. | 2018-07-01 | 10.1155/2018/2409471 | 1 | view | |
| Bradley | Front Immunol | Elucidating T Cell Activation-Dependent Mechanisms for Bifurcation of Regulatory and Effector T Cell Differentiation by Multidimensional and Single-Cell Analysis. | 2018-07-01 | 10.3389/fimmu.2018.01444 | 1 | view | |
| Tekin | Nat Biomed Eng | Effects of 3D culturing conditions on the transcriptomic profile of stem-cell-derived neurons. | 2018-07-01 | 10.1038/s41551-018-0219-9 | 20 | view | |
| Chen | Conf Proc IEEE Eng Med Biol Soc | Single-Cell Transcriptomics Reveals Heterogeneity and Drug Response of Human Colorectal Cancer Organoids. | 2018-07-01 | 10.1109/EMBC.2018.8512784 | view | ||
| Mukherjee | Conf Proc IEEE Eng Med Biol Soc | Identifying progressive gene network perturbation from single-cell RNA-seq data. | 2018-07-01 | 10.1109/EMBC.2018.8513444 | 6 | view | |
| Cui | Adv Anat Embryol Cell Biol | Transcriptional Regulation and Genes Involved in First Lineage Specification During Preimplantation Development. | 2018-07-01 | 10.1007/978-3-319-63187-5_4 | 4 | view | |
| Menon | Brief Funct Genomics | Clustering single cells: a review of approaches on high-and low-depth single-cell RNA-seq data. | 2018-07-01 | 10.1093/bfgp/elx044 | 27 | view | |
| Li | Neuroreport | A novel long noncoding RNA lnc158 promotes the differentiation of mouse neural precursor cells into oligodendrocytes by targeting nuclear factor-IB. | 2018-06-30 | 10.1097/WNR.0000000000001083 | 10 | view | |
| Lin | Acta Neuropathol Commun | Non-inflammatory tumor microenvironment of diffuse intrinsic pontine glioma. | 2018-06-28 | 10.1186/s40478-018-0553-x | 29 | view | |
| Baron | Nat Commun | Single-cell transcriptomics reveal the dynamic of haematopoietic stem cell production in the aorta. | 2018-06-28 | 10.1038/s41467-018-04893-3 | 16 | view | |
| Lukowski | J. Invest. Dermatol. | Detection of HPV E7 transcription at single-cell resolution in epidermis. | 2018-06-28 | 10.1016/j.jid.2018.06.169 | 6 | view | |
| Fletcher | Bioessays | Creating Lineage Trajectory Maps Via Integration of Single-Cell RNA-Sequencing and Lineage Tracing: Integrating transgenic lineage tracing and single-cell RNA-sequencing is a robust approach for mapping developmental lineage trajectories and cell fate changes. | 2018-06-26 | 10.1002/bies.201800056 | 10 | view | |
| Wang | Proc. Natl. Acad. Sci. U.S.A. | Gene expression distribution deconvolution in single-cell RNA sequencing. | 2018-06-26 | 10.1073/pnas.1721085115 | 36 | view | |
| Cristea | Nat Commun | Dissecting the mammary gland one cell at a time. | 2018-06-26 | 10.1038/s41467-018-04905-2 | 1 | view | |
| Zhang | Biophys. J. | Recent Developments in Single-Cell RNA-Seq of Microorganisms. | 2018-06-26 | 10.1016/j.bpj.2018.06.008 | 11 | view | |
| Zappia | PLoS Comput. Biol. | Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database. | 2018-06-25 | 10.1371/journal.pcbi.1006245 | 70 | view | |
| Huang | Nat. Methods | SAVER: gene expression recovery for single-cell RNA sequencing. | 2018-06-25 | 10.1038/s41592-018-0033-z | 92 | view | |
| Sebé-Pedrós | Nat Ecol Evol | Early metazoan cell type diversity and the evolution of multicellular gene regulation. | 2018-06-25 | 10.1038/s41559-018-0575-6 | 6 | view | |
| Savas | Nat. Med. | Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis. | 2018-06-25 | 10.1038/s41591-018-0078-7 | 139 | view | |
| Guo | Nat. Med. | Global characterization of T cells in non-small-cell lung cancer by single-cell sequencing. | 2018-06-25 | 10.1038/s41591-018-0045-3 | 197 | view | |
| Azizi | Cell | Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment. | 2018-06-25 | 10.1016/j.cell.2018.05.060 | 394 | view | |
| van Dijk | Cell | Recovering Gene Interactions from Single-Cell Data Using Data Diffusion. | 2018-06-22 | 10.1016/j.cell.2018.05.061 | view | ||
| Schwalie | Nature | A stromal cell population that inhibits adipogenesis in mammalian fat depots. | 2018-06-20 | 10.1038/s41586-018-0226-8 | 14 | view | |
| Chen | BMC Bioinformatics | Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data. | 2018-06-19 | 10.1186/s12859-018-2217-z | 9 | view | |
| Street | BMC Genomics | Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics. | 2018-06-19 | 10.1186/s12864-018-4772-0 | 28 | view | |
| Petukhov | Genome Biol. | dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments. | 2018-06-19 | 10.1186/s13059-018-1449-6 | 32 | view | |
| Zhang | IEEE/ACM Trans Comput Biol Bioinform | Comparison of computational methods for imputing single-cell RNA-sequencing data. | 2018-06-19 | 10.1109/TCBB.2018.2848633 | 23 | view | |
| Lu | Cell Cycle | Transcriptome analysis of PCOS arrested 2-cell embryos. | 2018-06-18 | 10.1080/15384101.2018.1467678 | 1 | view | |
| Harris | PLoS Biol. | Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics. | 2018-06-18 | 10.1371/journal.pbio.2006387 | 91 | view | |
| Barshad | Genome Res. | Human primitive brain displays negative mitochondrial-nuclear expression correlation of respiratory genes. | 2018-06-14 | 10.1101/gr.226324.117 | 8 | view | |
| Zeng | Cell | Prospectively Isolated Tetraspanin+ Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration. | 2018-06-14 | 10.1016/j.cell.2018.05.006 | view | ||
| Fan | Genome Res. | Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data. | 2018-06-13 | 10.1101/gr.228080.117 | 5 | view | |
| Park | Lab Chip | Isolation and genome sequencing of individual circulating tumor cells using hydrogel encapsulation and laser capture microdissection. | 2018-06-12 | 10.1039/c8lc00184g | 8 | view | |
| Zhang | J. Clin. Invest. | Ca2+-binding protein NECAB2 facilitates inflammatory pain hypersensitivity. | 2018-06-12 | 10.1172/JCI120913 | view | ||
| Goodrum | MBio | A Single-Cell Approach to the Elusive Latent Human Cytomegalovirus Transcriptome. | 2018-06-12 | 10.1128/mBio.01001-18 | 2 | view | |
| Worrall | Cell Rep | Non-random Mis-segregation of Human Chromosomes. | 2018-06-12 | 10.1016/j.celrep.2018.05.047 | 30 | view | |
| Zhao | Cell Stem Cell | Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming. | 2018-06-12 | 10.1016/j.stem.2018.05.025 | 46 | view | |
| Feng | IEEE/ACM Trans Comput Biol Bioinform | ELF: Extract Landmark Features by optimizing topology maintenance, redundancy, and specificity. | 2018-06-12 | 10.1109/TCBB.2018.2846225 | view | ||
| Dalal | Sci Rep | Transcriptome analysis highlights nuclear control of chloroplast development in the shoot apex. | 2018-06-11 | 10.1038/s41598-018-27305-4 | 4 | view | |
| Konstantinides | Cell | Phenotypic Convergence: Distinct Transcription Factors Regulate Common Terminal Features. | 2018-06-09 | 10.1016/j.cell.2018.05.021 | 50 | view | |
| Burl | Cell Metab. | Deconstructing Adipogenesis Induced by β3-Adrenergic Receptor Activation with Single-Cell Expression Profiling. | 2018-06-09 | 10.1016/j.cmet.2018.05.025 | 5 | view | |
| Gong | BMC Bioinformatics | DrImpute: imputing dropout events in single cell RNA sequencing data. | 2018-06-08 | 10.1186/s12859-018-2226-y | 33 | view | |
| Ortiz | Trends Cell Biol. | Analyzing Circulating Tumor Cells One at a Time. | 2018-06-08 | 10.1016/j.tcb.2018.05.004 | 12 | view | |
| Abdelmoez | Genome Biol. | SINC-seq: correlation of transient gene expressions between nucleus and cytoplasm reflects single-cell physiology. | 2018-06-06 | 10.1186/s13059-018-1446-9 | 20 | view | |
| Mead | BMC Biol. | Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types. | 2018-06-05 | 10.1186/s12915-018-0527-2 | 6 | view | |
| Yao | Circulation | Histone Variant H2A.Z is Required for the Maintenance of Smooth Muscle Cell Identity as Revealed by Single-Cell Transcriptomics. | 2018-06-05 | 10.1161/CIRCULATIONAHA.117.033114 | 1 | view | |
| Fan | Cell Res. | Spatial transcriptomic survey of human embryonic cerebral cortex by single-cell RNA-seq analysis. | 2018-06-04 | 10.1038/s41422-018-0053-3 | 54 | view | |
| Lindström | Dev. Cell | Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis. | 2018-06-04 | 10.1016/j.devcel.2018.05.010 | 71 | view | |
| Gao | Nat. Cell Biol. | Tracing the temporal-spatial transcriptome landscapes of the human fetal digestive tract using single-cell RNA-sequencing. | 2018-06-01 | 10.1038/s41556-018-0105-4 | 4 | view | |
| Buggert | Sci Immunol | Identification and characterization of HIV-specific resident memory CD8+ T cells in human lymphoid tissue. | 2018-06-01 | 10.1126/sciimmunol.aar4526 | view | ||
| Kageyama | Front Neurosci | ShinyCortex: Exploring Single-Cell Transcriptome Data From the Developing Human Cortex. | 2018-06-01 | 10.3389/fnins.2018.00315 | 6 | view | |
| Steuerman | Cell Syst | Dissection of Influenza Infection In Vivo by Single-Cell RNA Sequencing. | 2018-06-01 | 10.1016/j.cels.2018.05.008 | 28 | view | |
| Sainio | Neurol Genet | Absence of NEFL in patient-specific neurons in early-onset Charcot-Marie-Tooth neuropathy. | 2018-06-01 | 10.1212/NXG.0000000000000244 | 7 | view | |
| Yang | Oncol Lett | Single-cell whole-genome sequencing identifies human papillomavirus integration in cervical tumour cells prior to and following radiotherapy. | 2018-06-01 | 10.3892/ol.2018.8567 | 3 | view | |
| Do | Cell Discov | SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements. | 2018-06-01 | 10.1038/s41421-018-0032-3 | 3 | view | |
| Belokhvostova | Int. J. Dev. Biol. | Homeostasis, regeneration and tumour formation in the mammalian epidermis. | 2018-06-01 | 10.1387/ijdb.170341fw | 7 | view | |
| Fu | Adv. Exp. Med. Biol. | Single-Cell Non-coding RNA in Embryonic Development. | 2018-06-01 | 10.1007/978-981-13-0502-3_3 | 2 | view | |
| Huang | Adv. Exp. Med. Biol. | High Throughput Single Cell RNA Sequencing, Bioinformatics Analysis and Applications. | 2018-06-01 | 10.1007/978-981-13-0502-3_4 | 7 | view | |
| Shi | Adv. Exp. Med. Biol. | The Potential Roles and Advantages of Single Cell Sequencing in the Diagnosis and Treatment of Hematological Malignancies. | 2018-06-01 | 10.1007/978-981-13-0502-3_10 | 1 | view | |
| Yu | Adv. Exp. Med. Biol. | Application of Single Cell Sequencing in Cancer. | 2018-06-01 | 10.1007/978-981-13-0502-3_11 | 2 | view | |
| Luo | Adv. Exp. Med. Biol. | Emergence of Bias During the Synthesis and Amplification of cDNA for scRNA-seq. | 2018-06-01 | 10.1007/978-981-13-0502-3_12 | 1 | view | |
| Yao | Adv. Exp. Med. Biol. | Is Pooled CRISPR-Screening the Dawn of a New Era for Functional Genomics. | 2018-06-01 | 10.1007/978-981-13-0502-3_14 | view | ||
| Zeng | Adv. Exp. Med. Biol. | Roles of Single Cell Systems Biomedicine in Lung Diseases. | 2018-06-01 | 10.1007/978-981-13-0502-3_15 | view | ||
| Lu | Arthritis Rheumatol. | T cell-dependent affinity maturation and innate immune pathways differentially drive autoreactive B cell responses in rheumatoid arthritis. | 2018-05-31 | 10.1002/art.40578 | 18 | view | |
| Chen | Genome Biol. | UMI-count modeling and differential expression analysis for single-cell RNA sequencing. | 2018-05-31 | 10.1186/s13059-018-1438-9 | 20 | view | |
| Sebé-Pedrós | Cell | Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq. | 2018-05-31 | 10.1016/j.cell.2018.05.019 | 77 | view | |
| Tierney | Methods Mol. Biol. | Assessing Muscle Stem Cell Clonal Complexity During Aging. | 2018-05-30 | 10.1007/7651_2018_139 | view | ||
| Boukouvalas | Genome Biol. | BGP: identifying gene-specific branching dynamics from single-cell data with a branching Gaussian process. | 2018-05-29 | 10.1186/s13059-018-1440-2 | 7 | view | |
| Parekh | Gigascience | zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs. | 2018-05-26 | 10.1093/gigascience/giy059 | 75 | view | |
| Nötzel | Trends Parasitol. | Single-Cell Transcriptome Profiling of Protozoan and Metazoan Parasites. | 2018-05-25 | 10.1016/j.pt.2018.04.009 | 3 | view | |
| Kernfeld | Immunity | A Single-Cell Transcriptomic Atlas of Thymus Organogenesis Resolves Cell Types and Developmental Maturation. | 2018-05-25 | 10.1016/j.immuni.2018.04.015 | 7 | view | |
| Nguyen | Nat Commun | Profiling human breast epithelial cells using single cell RNA sequencing identifies cell diversity. | 2018-05-23 | 10.1038/s41467-018-04334-1 | 62 | view | |
| Demaree | J Vis Exp | An Ultrahigh-throughput Microfluidic Platform for Single-cell Genome Sequencing. | 2018-05-23 | 10.3791/57598 | 1 | view | |
| Potter | Nat Rev Nephrol | Single-cell RNA sequencing for the study of development, physiology and disease. | 2018-05-22 | 10.1038/s41581-018-0021-7 | 63 | view | |
| Wuidart | Nat. Cell Biol. | Early lineage segregation of multipotent embryonic mammary gland progenitors. | 2018-05-21 | 10.1038/s41556-018-0095-2 | 48 | view | |
| Ding | Nat Commun | Interpretable dimensionality reduction of single cell transcriptome data with deep generative models. | 2018-05-21 | 10.1038/s41467-018-04368-5 | 84 | view | |
| Skene | Nat. Genet. | Genetic identification of brain cell types underlying schizophrenia. | 2018-05-21 | 10.1038/s41588-018-0129-5 | 104 | view | |
| Srivastava | Nucleic Acids Res. | CellAtlasSearch: a scalable search engine for single cells. | 2018-05-21 | 10.1093/nar/gky421 | 10 | view | |
| Jiang | Bioinformatics | Single Cell Clustering Based on Cell-Pair Differentiability Correlation and Variance Analysis. | 2018-05-16 | 10.1093/bioinformatics/bty390 | 9 | view | |
| Deng | Biol. Reprod. | Long noncoding RNAs exchange during zygotic genome activation in goat. | 2018-05-15 | 10.1093/biolre/ioy118 | 12 | view | |
| Rodda | Immunity | Single-Cell RNA Sequencing of Lymph Node Stromal Cells Reveals Niche-Associated Heterogeneity. | 2018-05-15 | 10.1016/j.immuni.2018.04.006 | 58 | view | |
| Czerniecki | Cell Stem Cell | High-Throughput Screening Enhances Kidney Organoid Differentiation from Human Pluripotent Stem Cells and Enables Automated Multidimensional Phenotyping. | 2018-05-15 | 10.1016/j.stem.2018.04.022 | 55 | view | |
| Vértesy | Nat Commun | Parental haplotype-specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells. | 2018-05-14 | 10.1038/s41467-018-04215-7 | 9 | view | |
| Jay | Nat Microbiol | Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats. | 2018-05-14 | 10.1038/s41564-018-0163-1 | 11 | view | |
| Jaff | Neuroradiology | Transcriptomic analysis of the harvested endothelial cells in a swine model of mechanical thrombectomy. | 2018-05-14 | 10.1007/s00234-018-2033-1 | 2 | view | |
| Schiaffino | FEBS J. | Muscle fiber type diversity revealed by anti-myosin heavy chain antibodies. | 2018-05-14 | 10.1111/febs.14502 | 21 | view | |
| Sisakhtnezhad | J. Cell. Biochem. | In silico analysis of single-cell RNA sequencing data from 3 and 7 days old mouse spermatogonial stem cells to identify their differentially expressed genes and transcriptional regulators. | 2018-05-11 | 10.1002/jcb.27066 | view | ||
| Nguyen | Genome Res. | Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulations. | 2018-05-11 | 10.1101/gr.223925.117 | 31 | view | |
| Pu | Antiviral Res. | Feasibility and biological rationale of repurposing sunitinib and erlotinib for dengue treatment. | 2018-05-10 | 10.1016/j.antiviral.2018.05.001 | 9 | view | |
| Tasic | Curr. Opin. Neurobiol. | Single cell transcriptomics in neuroscience: cell classification and beyond. | 2018-05-05 | 10.1016/j.conb.2018.04.021 | 23 | view | |
| Lu | Cell Metab. | The Polycomb-Dependent Epigenome Controls β Cell Dysfunction, Dedifferentiation, and Diabetes. | 2018-05-04 | 10.1016/j.cmet.2018.04.013 | 6 | view | |
| Kramann | JCI Insight | Parabiosis and single-cell RNA sequencing reveal a limited contribution of monocytes to myofibroblasts in kidney fibrosis. | 2018-05-03 | 10.1172/jci.insight.99561 | 15 | view | |
| Lun | PLoS Comput. Biol. | beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types. | 2018-05-03 | 10.1371/journal.pcbi.1006135 | view | ||
| Iacono | Genome Res. | bigSCale: an analytical framework for big-scale single-cell data. | 2018-05-03 | 10.1101/gr.230771.117 | 24 | view | |
| Shah | Cell | Single-Cell Transcriptomics and Fate Mapping of Ependymal Cells Reveals an Absence of Neural Stem Cell Function. | 2018-05-03 | 10.1016/j.cell.2018.03.063 | 37 | view | |
| Sarkar | Cell Stem Cell | Efficient Generation of CA3 Neurons from Human Pluripotent Stem Cells Enables Modeling of Hippocampal Connectivity In Vitro. | 2018-05-03 | 10.1016/j.stem.2018.04.009 | 41 | view | |
| Tosches | Science | Evolution of pallium, hippocampus, and cortical cell types revealed by single-cell transcriptomics in reptiles. | 2018-05-03 | 10.1126/science.aar4237 | 73 | view | |
| Kester | Cell Stem Cell | Single-Cell Transcriptomics Meets Lineage Tracing. | 2018-05-03 | 10.1016/j.stem.2018.04.014 | 107 | view | |
| Ortega | Curr. Opin. Genet. Dev. | Functional genetics of early human development. | 2018-05-02 | 10.1016/j.gde.2018.04.005 | 8 | view | |
| Wu | J. Invest. Dermatol. | Research Techniques Made Simple: Single-Cell RNA Sequencing and its Applications in Dermatology. | 2018-05-01 | 10.1016/j.jid.2018.01.026 | 3 | view | |
| Rivron | Nature | Blastocyst-like structures generated solely from stem cells. | 2018-05-01 | 10.1038/s41586-018-0051-0 | 101 | view | |
| Tran | Semin. Cell Dev. Biol. | A lineage CLOUD for neoblasts. | 2018-05-01 | 10.1016/j.semcdb.2018.04.012 | 3 | view | |
| Hu | Front Cell Dev Biol | Single Cell Multi-Omics Technology: Methodology and Application. | 2018-05-01 | 10.3389/fcell.2018.00028 | 30 | view | |
| Matern | Front Cell Dev Biol | Transcriptomic Profiling of Zebrafish Hair Cells Using RiboTag. | 2018-05-01 | 10.3389/fcell.2018.00047 | 9 | view | |
| Bayega | Methods Mol. Biol. | Current and Future Methods for mRNA Analysis: A Drive Toward Single Molecule Sequencing. | 2018-05-01 | 10.1007/978-1-4939-7834-2_11 | 4 | view | |
| Freytag | F1000Res | Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data. | 2018-05-01 | 10.12688/f1000research.15809.2 | view | ||
| Innes | F1000Res | scClustViz - Single-cell RNAseq cluster assessment and visualization. | 2018-05-01 | 10.12688/f1000research.16198.2 | view | ||
| Chen | Nucleic Acids Res. | BCseq: accurate single cell RNA-seq quantification with bias correction. | 2018-04-30 | 10.1093/nar/gky308 | 8 | view | |
| Wirka | Circ. Res. | Advances in Transcriptomics: Investigating Cardiovascular Disease at Unprecedented Resolution. | 2018-04-27 | 10.1161/CIRCRESAHA.117.310910 | 5 | view | |
| Wagner | Science | Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo. | 2018-04-26 | 10.1126/science.aar4362 | 201 | view | |
| Lukassen | Sci Rep | Characterization of germ cell differentiation in the male mouse through single-cell RNA sequencing. | 2018-04-25 | 10.1038/s41598-018-24725-0 | 4 | view | |
| Buenrostro | Cell | Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation. | 2018-04-25 | 10.1016/j.cell.2018.03.074 | 141 | view | |
| Heintze | Nat Rev Nephrol | Whole-kidney single-cell transcriptomics identifies new cell types. | 2018-04-25 | 10.1038/s41581-018-0013-7 | view | ||
| Miao | Bioinformatics | DEsingle for detecting three types of differential expression in single-cell RNA-seq data. | 2018-04-24 | 10.1093/bioinformatics/bty332 | 2 | view | |
| Wu | Bioinformatics | Two-phase differential expression analysis for single cell RNA-seq. | 2018-04-24 | 10.1093/bioinformatics/bty329 | 18 | view | |
| Golumbeanu | Cell Rep | Single-Cell RNA-Seq Reveals Transcriptional Heterogeneity in Latent and Reactivated HIV-Infected Cells. | 2018-04-24 | 10.1016/j.celrep.2018.03.102 | 17 | view | |
| Wang | Methods | SigEMD: A powerful method for differential gene expression analysis in single-cell RNA sequencing data. | 2018-04-24 | 10.1016/j.ymeth.2018.04.017 | 2 | view | |
| Häring | Nat. Neurosci. | Neuronal atlas of the dorsal horn defines its architecture and links sensory input to transcriptional cell types. | 2018-04-23 | 10.1038/s41593-018-0141-1 | 78 | view | |
| Xiao | Dev. Cell | Hippo Signaling Plays an Essential Role in Cell State Transitions during Cardiac Fibroblast Development. | 2018-04-23 | 10.1016/j.devcel.2018.03.019 | 40 | view | |
| Filbin | Science | Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq. | 2018-04-20 | 10.1126/science.aao4750 | 145 | view | |
| Müller | Bioinformatics | CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones. | 2018-04-20 | 10.1093/bioinformatics/bty316 | 19 | view | |
| Fincher | Science | Cell type transcriptome atlas for the planarian Schmidtea mediterranea. | 2018-04-19 | 10.1126/science.aaq1736 | 70 | view | |
| Croset | Elife | Cellular diversity in the Drosophila midbrain revealed by single-cell transcriptomics. | 2018-04-19 | 10.7554/eLife.34550 | 87 | view | |
| Plass | Science | Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics. | 2018-04-19 | 10.1126/science.aaq1723 | 30 | view | |
| De Bie | Leukemia | Single-cell sequencing reveals the origin and the order of mutation acquisition in T-cell acute lymphoblastic leukemia. | 2018-04-18 | 10.1038/s41375-018-0127-8 | view | ||
| He | BMC Genomics | Identification and characterization of functional modules reflecting transcriptome transition during human neuron maturation. | 2018-04-17 | 10.1186/s12864-018-4649-2 | 1 | view | |
| Sun | J. Biol. Chem. | Single-cell RNA-Seq reveals cell heterogeneity and hierarchy within mouse mammary epithelia. | 2018-04-17 | 10.1074/jbc.RA118.002297 | 8 | view | |
| Wang | J. Med. Genet. | Genetic and phenotypic difference in CD8+ T cell exhaustion between chronic hepatitis B infection and hepatocellular carcinoma. | 2018-04-17 | 10.1136/jmedgenet-2018-105267 | view | ||
| Pijuan-Sala | Nat. Rev. Mol. Cell Biol. | Single-cell transcriptional profiling: a window into embryonic cell-type specification. | 2018-04-17 | 10.1038/s41580-018-0002-5 | 25 | view | |
| Xu | Genomics | Where are we going with genomics in plant pathogenic bacteria? | 2018-04-17 | 10.1016/j.ygeno.2018.04.011 | 3 | view | |
| Pflug | Bioinformatics | TRUmiCount: Correctly counting absolute numbers of molecules using unique molecular identifiers. | 2018-04-16 | 10.1093/bioinformatics/bty283 | 5 | view | |
| Alves | Genome Med | Sensitivity to sequencing depth in single-cell cancer genomics. | 2018-04-16 | 10.1186/s13073-018-0537-2 | 8 | view | |
| Kim | Cell | Chemoresistance Evolution in Triple-Negative Breast Cancer Delineated by Single-Cell Sequencing. | 2018-04-13 | 10.1016/j.cell.2018.03.041 | 104 | view | |
| Simoni | Curr. Opin. Immunol. | Mass cytometry: a powerful tool for dissecting the immune landscape. | 2018-04-11 | 10.1016/j.coi.2018.03.023 | 3 | view | |
| Johnson | Curr Oncol Rep | Single-Cell RNA-Sequencing in Glioma. | 2018-04-10 | 10.1007/s11912-018-0673-2 | 7 | view | |
| Cembrowski | Cell | Dissociable Structural and Functional Hippocampal Outputs via Distinct Subiculum Cell Classes. | 2018-04-10 | 10.1016/j.cell.2018.03.031 | 53 | view | |
| Herman | Nat. Methods | FateID infers cell fate bias in multipotent progenitors from single-cell RNA-seq data. | 2018-04-09 | 10.1038/nmeth.4662 | 78 | view | |
| Zhang | PLoS Comput. Biol. | A multitask clustering approach for single-cell RNA-seq analysis in Recessive Dystrophic Epidermolysis Bullosa. | 2018-04-09 | 10.1371/journal.pcbi.1006053 | 4 | view | |
| Spanjaard | Nat. Biotechnol. | Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars. | 2018-04-09 | 10.1038/nbt.4124 | 148 | view | |
| Tata | Cell Stem Cell | Myoepithelial Cells of Submucosal Glands Can Function as Reserve Stem Cells to Regenerate Airways after Injury. | 2018-04-07 | 10.1016/j.stem.2018.03.018 | 7 | view | |
| Han | Genome Biol. | Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing. | 2018-04-05 | 10.1186/s13059-018-1426-0 | 7 | view | |
| Park | Science | Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease. | 2018-04-05 | 10.1126/science.aar2131 | 160 | view | |
| Rizzetto | Bioinformatics | B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle. | 2018-04-05 | 10.1093/bioinformatics/bty203 | 28 | view | |
| Loeffler-Wirth | Biology (Basel) | Pseudotime Dynamics in Melanoma Single-Cell Transcriptomes Reveals Different Mechanisms of Tumor Progression. | 2018-04-03 | 10.3390/biology7020023 | 3 | view | |
| Targa | Curr. Opin. Cell Biol. | Cancer: a CINful evolution. | 2018-04-03 | 10.1016/j.ceb.2018.03.007 | 18 | view | |
| Haghverdi | Nat. Biotechnol. | Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors. | 2018-04-02 | 10.1038/nbt.4091 | 34 | view | |
| Butler | Nat. Biotechnol. | Integrating single-cell transcriptomic data across different conditions, technologies, and species. | 2018-04-02 | 10.1038/nbt.4096 | 820 | view | |
| Kiselev | Nat. Methods | scmap: projection of single-cell RNA-seq data across data sets. | 2018-04-02 | 10.1038/nmeth.4644 | 132 | view | |
| van der Wijst | Nat. Genet. | Single-cell RNA sequencing identifies celltype-specific cis-eQTLs and co-expression QTLs. | 2018-04-02 | 10.1038/s41588-018-0089-9 | view | ||
| Svensson | Nat Protoc | Exponential scaling of single-cell RNA-seq in the past decade. | 2018-04-01 | 10.1038/nprot.2017.149 | 44 | view | |
| Hu | J. Invest. Dermatol. | A Fibroblast Is Not a Fibroblast Is Not a Fibroblast. | 2018-04-01 | 10.1016/j.jid.2017.10.012 | 10 | view | |
| Sagar | Methods Mol. Biol. | High-Throughput Single-Cell RNA Sequencing and Data Analysis. | 2018-04-01 | 10.1007/978-1-4939-7768-0_15 | view | ||
| Levitin | Trends Cancer | Single-Cell Transcriptomic Analysis of Tumor Heterogeneity. | 2018-04-01 | 10.1016/j.trecan.2018.02.003 | 51 | view | |
| Yi | Bioinformatics | Detecting hidden batch factors through data-adaptive adjustment for biological effects. | 2018-04-01 | 10.1093/bioinformatics/btx635 | 3 | view | |
| Hen-Avivi | Curr. Opin. Microbiol. | Immune cell type 'fingerprints' at the basis of outcome diversity of human infection. | 2018-04-01 | 10.1016/j.mib.2017.09.012 | 5 | view | |
| Hu | Front Immunol | Impaired CD27+IgD+ B Cells With Altered Gene Signature in Rheumatoid Arthritis. | 2018-04-01 | 10.3389/fimmu.2018.00626 | view | ||
| Nässel | Front Cell Neurosci | Substrates for Neuronal Cotransmission With Neuropeptides and Small Molecule Neurotransmitters in Drosophila. | 2018-04-01 | 10.3389/fncel.2018.00083 | 17 | view | |
| Ichinohe | Front Immunol | Next-Generation Immune Repertoire Sequencing as a Clue to Elucidate the Landscape of Immune Modulation by Host-Gut Microbiome Interactions. | 2018-04-01 | 10.3389/fimmu.2018.00668 | 6 | view | |
| Tawil | Thromb. Res. | Single cell coagulomes as constituents of the oncogene-driven coagulant phenotype in brain tumours. | 2018-04-01 | 10.1016/j.thromres.2018.01.021 | 8 | view | |
| DeLaughter | Curr Protoc Mol Biol | The Use of the Fluidigm C1 for RNA Expression Analyses of Single Cells. | 2018-04-01 | 10.1002/cpmb.55 | 7 | view | |
| Olsen | Curr Protoc Mol Biol | Introduction to Single-Cell RNA Sequencing. | 2018-04-01 | 10.1002/cpmb.57 | 12 | view | |
| Raj | Nat. Biotechnol. | Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain. | 2018-03-28 | 10.1038/nbt.4103 | 218 | view | |
| Alemany | Nature | Whole-organism clone tracing using single-cell sequencing. | 2018-03-28 | 10.1038/nature25969 | 88 | view | |
| Reid | Elife | Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites. | 2018-03-27 | 10.7554/eLife.33105 | 60 | view | |
| Dahlin | Blood | A single cell hematopoietic landscape resolves eight lineage trajectories and defects in Kit mutant mice. | 2018-03-27 | 10.1182/blood-2017-12-821413 | 12 | view | |
| Xie | Cell Rep | Single-Cell Deconvolution of Fibroblast Heterogeneity in Mouse Pulmonary Fibrosis. | 2018-03-27 | 10.1016/j.celrep.2018.03.010 | 88 | view | |
| Liu | Cancer Biol. Ther. | Comparison of EpCAMhighCD44+ cancer stem cells with EpCAMhighCD44- tumor cells in colon cancer by single-cell sequencing. | 2018-03-26 | 10.1080/15384047.2018.1456605 | view | ||
| Aevermann | Hum. Mol. Genet. | Big data and single cell transcriptomics: implications for ontological representation. | 2018-03-24 | 10.1093/hmg/ddy100 | view | ||
| Severson | Nat Commun | BEARscc determines robustness of single-cell clusters using simulated technical replicates. | 2018-03-22 | 10.1038/s41467-018-03608-y | 6 | view | |
| Ziegenhain | Brief Funct Genomics | Quantitative single-cell transcriptomics. | 2018-03-22 | 10.1093/bfgp/ely009 | 27 | view | |
| Chen | Sci Rep | Comparison of single cell sequencing data between two whole genome amplification methods on two sequencing platforms. | 2018-03-21 | 10.1038/s41598-018-23325-2 | view | ||
| Verheijen | Trends Genet. | Understanding Alzheimer Disease at the Interface between Genetics and Transcriptomics. | 2018-03-21 | 10.1016/j.tig.2018.02.007 | 62 | view | |
| Bergiers | Elife | Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis. | 2018-03-20 | 10.7554/eLife.29312 | 10 | view | |
| Upadhyay | Genome Med | BALDR: a computational pipeline for paired heavy and light chain immunoglobulin reconstruction in single-cell RNA-seq data. | 2018-03-20 | 10.1186/s13073-018-0528-3 | 16 | view | |
| Yu | Development | Dynamics of chromatin marks and the role of JMJD3 during pancreatic endocrine cell fate commitment. | 2018-03-20 | 10.1242/dev.163162 | 7 | view | |
| Edsgärd | Nat. Methods | Identification of spatial expression trends in single-cell gene expression data. | 2018-03-19 | 10.1038/nmeth.4634 | 52 | view | |
| Wang | Sci Rep | Multiplexed imaging of high-density libraries of RNAs with MERFISH and expansion microscopy. | 2018-03-19 | 10.1038/s41598-018-22297-7 | 54 | view | |
| Cristinelli | Curr Opin Virol | The use of single-cell RNA-Seq to understand virus-host interactions. | 2018-03-17 | 10.1016/j.coviro.2018.03.001 | 5 | view | |
| Cochain | Circ. Res. | Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis. | 2018-03-15 | 10.1161/CIRCRESAHA.117.312509 | 115 | view | |
| Winkels | Circ. Res. | Atlas of the Immune Cell Repertoire in Mouse Atherosclerosis Defined by Single-Cell RNA-Sequencing and Mass Cytometry. | 2018-03-15 | 10.1161/CIRCRESAHA.117.312513 | 94 | view | |
| Zheng | Mol. Syst. Biol. | Molecular transitions in early progenitors during human cord blood hematopoiesis. | 2018-03-15 | 10.15252/msb.20178041 | 30 | view | |
| Rosenberg | Science | Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding. | 2018-03-15 | 10.1126/science.aam8999 | 259 | view | |
| Ding | PLoS Comput. Biol. | iDREM: Interactive visualization of dynamic regulatory networks. | 2018-03-14 | 10.1371/journal.pcbi.1006019 | 5 | view | |
| Zhong | Nature | A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex. | 2018-03-14 | 10.1038/nature25980 | 207 | view | |
| Dong | Genome Biol. | Single-cell RNA-seq analysis unveils a prevalent epithelial/mesenchymal hybrid state during mouse organogenesis. | 2018-03-14 | 10.1186/s13059-018-1416-2 | 44 | view | |
| Vegh | Brief Funct Genomics | The impact of single-cell RNA sequencing on understanding the functional organization of the immune system. | 2018-03-14 | 10.1093/bfgp/ely003 | 11 | view | |
| Cole | Nucleic Acids Res. | Tn5Prime, a Tn5 based 5' capture method for single cell RNA-seq. | 2018-03-14 | 10.1093/nar/gky182 | view | ||
| Ziller | Cell Stem Cell | Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology. | 2018-03-14 | 10.1016/j.stem.2018.02.012 | 12 | view | |
| Treen | Curr. Biol. | Depletion of Maternal Cyclin B3 Contributes to Zygotic Genome Activation in the Ciona Embryo. | 2018-03-14 | 10.1016/j.cub.2018.02.046 | 13 | view | |
| Strell | FEBS J. | Placing RNA in Context and Space - Methods for Spatially Resolved Transcriptomics. | 2018-03-14 | 10.1111/febs.14435 | 36 | view | |
| Shnayder | MBio | Defining the Transcriptional Landscape during Cytomegalovirus Latency with Single-Cell RNA Sequencing. | 2018-03-13 | 10.1128/mBio.00013-18 | 28 | view | |
| Alpert | Nat. Methods | Alignment of single-cell trajectories to compare cellular expression dynamics. | 2018-03-12 | 10.1038/nmeth.4628 | 26 | view | |
| Langer | Stem Cell Reports | Retinal Ganglion Cell Diversity and Subtype Specification from Human Pluripotent Stem Cells. | 2018-03-10 | 10.1016/j.stemcr.2018.02.010 | 7 | view | |
| Zhang | BMC Bioinformatics | An interpretable framework for clustering single-cell RNA-Seq datasets. | 2018-03-09 | 10.1186/s12859-018-2092-7 | 16 | view | |
| Sasagawa | Genome Biol. | Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads. | 2018-03-09 | 10.1186/s13059-018-1407-3 | 33 | view | |
| Pandey | Curr. Biol. | Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq. | 2018-03-09 | 10.1016/j.cub.2018.02.040 | 54 | view | |
| Li | Nat Commun | An accurate and robust imputation method scImpute for single-cell RNA-seq data. | 2018-03-08 | 10.1038/s41467-018-03405-7 | 225 | view | |
| Lavagi | Sci Rep | Single-cell RNA sequencing reveals developmental heterogeneity of blastomeres during major genome activation in bovine embryos. | 2018-03-06 | 10.1038/s41598-018-22248-2 | 9 | view | |
| Donega | Cell Rep | Transcriptional Dysregulation in Postnatal Glutamatergic Progenitors Contributes to Closure of the Cortical Neurogenic Period. | 2018-03-06 | 10.1016/j.celrep.2018.02.030 | 5 | view | |
| Mayer | Nature | Developmental diversification of cortical inhibitory interneurons. | 2018-03-05 | 10.1038/nature25999 | 103 | view | |
| Lummertz da Rocha | Nat Commun | Reconstruction of complex single-cell trajectories using CellRouter. | 2018-03-01 | 10.1038/s41467-018-03214-y | view | ||
| Hook | Am. J. Hum. Genet. | Single-Cell RNA-Seq of Mouse Dopaminergic Neurons Informs Candidate Gene Selection for Sporadic Parkinson Disease. | 2018-03-01 | 10.1016/j.ajhg.2018.02.001 | 27 | view | |
| Guo | Methods Mol. Biol. | Single-Cell Transcriptome Analysis Using SINCERA Pipeline. | 2018-03-01 | 10.1007/978-1-4939-7710-9_15 | 2 | view | |
| Gao | Methods Mol. Biol. | Data Analysis in Single-Cell Transcriptome Sequencing. | 2018-03-01 | 10.1007/978-1-4939-7717-8_18 | 7 | view | |
| Pillonel | Front Microbiol | Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle. | 2018-03-01 | 10.3389/fmicb.2018.00079 | 17 | view | |
| Xu | Methods Mol. Biol. | Applications of Single-Cell Sequencing for Multiomics. | 2018-03-01 | 10.1007/978-1-4939-7717-8_19 | 8 | view | |
| Pensold | J Exp Neurosci | Single-Cell Transcriptomics Reveals Regulators of Neuronal Migration and Maturation During Brain Development. | 2018-03-01 | 10.1177/1179069518760783 | 7 | view | |
| Terryn | F1000Res | Recent advances in lineage differentiation from stem cells: hurdles and opportunities? | 2018-03-01 | 10.12688/f1000research.12596.1 | 1 | view | |
| Zhu | Ann Appl Stat | A UNIFIED STATISTICAL FRAMEWORK FOR SINGLE CELL AND BULK RNA SEQUENCING DATA. | 2018-03-01 | 10.1214/17-AOAS1110 | 25 | view | |
| Mueller | J Am Stat Assoc | Modeling Persistent Trends in Distributions. | 2018-03-01 | 10.1080/01621459.2017.1341412 | 1 | view | |
| Andrews | F1000Res | False signals induced by single-cell imputation. | 2018-03-01 | 10.12688/f1000research.16613.2 | 14 | view | |
| Crow | Nat Commun | Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor. | 2018-02-28 | 10.1038/s41467-018-03282-0 | 81 | view | |
| Zhao | Antioxid. Redox Signal. | Single-cell transcriptomics of human oocytes: environment-driven metabolic competition and compensatory mechanisms during oocyte maturation. | 2018-02-27 | 10.1089/ars.2017.7151 | view | ||
| Vu | Bioinformatics | Isoform-level gene expression patterns in single-cell RNA-sequencing data. | 2018-02-27 | 10.1093/bioinformatics/bty100 | 6 | view | |
| Van den Berge | Genome Biol. | Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications. | 2018-02-26 | 10.1186/s13059-018-1406-4 | view | ||
| Soneson | Nat. Methods | Bias, robustness and scalability in single-cell differential expression analysis. | 2018-02-26 | 10.1038/nmeth.4612 | 207 | view | |
| Hockley | Gut | Single-cell RNAseq reveals seven classes of colonic sensory neuron. | 2018-02-26 | 10.1136/gutjnl-2017-315631 | 52 | view | |
| Kayaba | Int. Immunol. | Bone Marrow PDGFR+Sca-1+ Enriched Mesenchymal Stem Cells Support Survival of and Antibody Production by Plasma Cells in vitro through IL-6. | 2018-02-24 | 10.1093/intimm/dxy018 | view | ||
| Stephenson | Nat Commun | Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation. | 2018-02-23 | 10.1038/s41467-017-02659-x | 56 | view | |
| Mizoguchi | Nat Commun | Functionally distinct disease-associated fibroblast subsets in rheumatoid arthritis. | 2018-02-23 | 10.1038/s41467-018-02892-y | 94 | view | |
| Kashima | Sci Rep | Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response. | 2018-02-22 | 10.1038/s41598-018-21161-y | 6 | view | |
| Han | Cell | Mapping the Mouse Cell Atlas by Microwell-Seq. | 2018-02-22 | 10.1016/j.cell.2018.02.001 | 92 | view | |
| Mi | Science | Early emergence of cortical interneuron diversity in the mouse embryo. | 2018-02-22 | 10.1126/science.aar6821 | 25 | view | |
| Clark | Nat Commun | scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells. | 2018-02-22 | 10.1038/s41467-018-03149-4 | 91 | view | |
| Sereti | Nat Commun | Analysis of cardiomyocyte clonal expansion during mouse heart development and injury. | 2018-02-21 | 10.1038/s41467-018-02891-z | 22 | view | |
| Yip | Brief. Bioinformatics | Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data. | 2018-02-21 | 10.1093/bib/bby011 | 28 | view | |
| Tusi | Nature | Population snapshots predict early haematopoietic and erythroid hierarchies. | 2018-02-21 | 10.1038/nature25741 | 130 | view | |
| Munson-McGee | ISME J | A virus or more in (nearly) every cell: ubiquitous networks of virus-host interactions in extreme environments. | 2018-02-21 | 10.1038/s41396-018-0071-7 | 10 | view | |
| Wang | Proc. Natl. Acad. Sci. U.S.A. | Pulmonary alveolar type I cell population consists of two distinct subtypes that differ in cell fate. | 2018-02-20 | 10.1073/pnas.1719474115 | 39 | view | |
| DeWitt | Mol. Biol. Evol. | Using genotype abundance to improve phylogenetic inference. | 2018-02-20 | 10.1093/molbev/msy020 | 4 | view | |
| Hill | Nat. Methods | On the design of CRISPR-based single-cell molecular screens. | 2018-02-19 | 10.1038/nmeth.4604 | 64 | view | |
| Zanini | Elife | Single-cell transcriptional dynamics of flavivirus infection. | 2018-02-16 | 10.7554/eLife.32942 | 52 | view | |
| Barron | Nucleic Acids Res. | A sparse differential clustering algorithm for tracing cell type changes via single-cell RNA-sequencing data. | 2018-02-16 | 10.1093/nar/gkx1113 | view | ||
| Sun | Oncotarget | Single-cell RNA sequencing reveals gene expression signatures of breast cancer-associated endothelial cells. | 2018-02-16 | 10.18632/oncotarget.23760 | 13 | view | |
| Lin | PLoS Comput. Biol. | A stochastic and dynamical view of pluripotency in mouse embryonic stem cells. | 2018-02-16 | 10.1371/journal.pcbi.1006000 | 23 | view | |
| Zhao | Cancer Res. | Single-cell transcriptome analyses reveal endothelial cell heterogeneity in tumors and changes following anti-angiogenic treatment. | 2018-02-15 | 10.1158/0008-5472.CAN-17-2728 | 6 | view | |
| Vanlandewijck | Nature | A molecular atlas of cell types and zonation in the brain vasculature. | 2018-02-14 | 10.1038/nature25739 | 72 | view | |
| Wang | BMC Genomics | Predictors of breast cancer cell types and their prognostic power in breast cancer patients. | 2018-02-13 | 10.1186/s12864-018-4527-y | 10 | view | |
| Daniszewski | Sci Data | Single cell RNA sequencing of stem cell-derived retinal ganglion cells. | 2018-02-13 | 10.1038/sdata.2018.13 | 13 | view | |
| Delley | Sci Rep | Combined aptamer and transcriptome sequencing of single cells. | 2018-02-13 | 10.1038/s41598-018-21153-y | 7 | view | |
| Zemmour | Nat. Immunol. | Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR. | 2018-02-12 | 10.1038/s41590-018-0051-0 | 61 | view | |
| Moon | Lab Chip | Inertial-ordering-assisted droplet microfluidics for high-throughput single-cell RNA-sequencing. | 2018-02-09 | 10.1039/c7lc01284e | 27 | view | |
| Miyai | Genes Dev. | Three-step transcriptional priming that drives the commitment of multipotent progenitors toward B cells. | 2018-02-09 | 10.1101/gad.309575.117 | 16 | view | |
| Park | Bioinformatics | Spectral clustering based on learning similarity matrix. | 2018-02-08 | 10.1093/bioinformatics/bty050 | 2 | view | |
| Qin | PLoS Genet. | Gli3 is a negative regulator of Tas1r3-expressing taste cells. | 2018-02-07 | 10.1371/journal.pgen.1007058 | 7 | view | |
| Torre | Cell Syst | Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISH. | 2018-02-07 | 10.1016/j.cels.2018.01.014 | 41 | view | |
| Stévant | Cell Rep | Deciphering Cell Lineage Specification during Male Sex Determination with Single-Cell RNA Sequencing. | 2018-02-06 | 10.1016/j.celrep.2018.01.043 | 50 | view | |
| Dumdie | Dev. Cell | Chromatin Modification and Global Transcriptional Silencing in the Oocyte Mediated by the mRNA Decay Activator ZFP36L2. | 2018-02-05 | 10.1016/j.devcel.2018.01.006 | 8 | view | |
| Jin | Bioinformatics | scEpath: Energy landscape-based inference of transition probabilities and cellular trajectories from single-cell transcriptomic data. | 2018-02-05 | 10.1093/bioinformatics/bty058 | 10 | view | |
| Wang | Cell Biol. Toxicol. | Can single-cell RNA sequencing crack the mystery of cells? | 2018-02-01 | 10.1007/s10565-017-9404-y | 30 | view | |
| Hedlund | Mol. Aspects Med. | Single-cell RNA sequencing: Technical advancements and biological applications. | 2018-02-01 | 10.1016/j.mam.2017.07.003 | 37 | view | |
| Sen | Methods Mol. Biol. | Single-Cell RNA Sequencing of Glioblastoma Cells. | 2018-02-01 | 10.1007/978-1-4939-7659-1_12 | 8 | view | |
| Li | Neurosci Bull | Somatosensory Neuron Typing with High-Coverage Single-Cell RNA Sequencing and Functional Analysis. | 2018-02-01 | 10.1007/s12264-017-0147-9 | 18 | view | |
| Dharampuriya | Curr. Opin. Cell Biol. | Tracking the origin, development, and differentiation of hematopoietic stem cells. | 2018-02-01 | 10.1016/j.ceb.2018.01.002 | 3 | view | |
| Durruthy-Durruthy | Methods Mol. Biol. | Using Fluidigm C1 to Generate Single-Cell Full-Length cDNA Libraries for mRNA Sequencing. | 2018-02-01 | 10.1007/978-1-4939-7471-9_11 | 5 | view | |
| Cai | IEEE Trans Biomed Eng | WaveDec: A Wavelet Approach to Identify Both Shared and Individual Patterns of Copy-Number Variations. | 2018-02-01 | 10.1109/TBME.2017.2769677 | 4 | view | |
| Sagner | PLoS Biol. | Olig2 and Hes regulatory dynamics during motor neuron differentiation revealed by single cell transcriptomics. | 2018-02-01 | 10.1371/journal.pbio.2003127 | 21 | view | |
| Naidoo | Curr Issues Mol Biol | Dual RNA-Sequencing to Elucidate the Plant-Pathogen Duel. | 2018-02-01 | 10.21775/cimb.027.127 | 1 | view | |
| Carter | F1000Res | Recent advances in understanding evolution of the placenta: insights from transcriptomics. | 2018-02-01 | 10.12688/f1000research.13115.1 | 5 | view | |
| DiStefano | Methods Mol. Biol. | Identification of Disease Susceptibility Alleles in the Next Generation Sequencing Era. | 2018-02-01 | 10.1007/978-1-4939-7471-9_1 | 2 | view | |
| Kiniwa | J. Dermatol. Sci. | Diversity of circulating tumor cells in peripheral blood: Detection of heterogeneous BRAF mutations in a patient with advanced melanoma by single-cell analysis. | 2018-02-01 | 10.1016/j.jdermsci.2018.01.011 | 4 | view | |
| Mamedov | Immunity | A Macrophage Colony-Stimulating Factor-Producing γδ T Cell Subset Prevents Malarial Parasitemic Recurrence. | 2018-02-01 | 10.1016/j.immuni.2018.01.009 | 37 | view | |
| Tian | PLoS ONE | Single cell on-chip whole genome amplification via micropillar arrays for reduced amplification bias. | 2018-02-01 | 10.1371/journal.pone.0191520 | 4 | view | |
| Jeong | Front Neurosci | Exploring the Complexity of Cortical Development Using Single-Cell Transcriptomics. | 2018-02-01 | 10.3389/fnins.2018.00031 | 5 | view | |
| Ramos-Ibeas | Curr. Top. Dev. Biol. | States and Origins of Mammalian Embryonic Pluripotency In Vivo and in a Dish. | 2018-02-01 | 10.1016/bs.ctdb.2017.11.002 | 6 | view | |
| Dang | PLoS Genet. | Coordination of olfactory receptor choice with guidance receptor expression and function in olfactory sensory neurons. | 2018-01-31 | 10.1371/journal.pgen.1007164 | 2 | view | |
| Dal Molin | Brief. Bioinformatics | How to design a single-cell RNA-sequencing experiment: pitfalls, challenges and perspectives. | 2018-01-31 | 10.1093/bib/bby007 | view | ||
| Hayashi | Neuron | Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control. | 2018-01-31 | 10.1016/j.neuron.2018.01.023 | 41 | view | |
| Vierra | Mol Metab | TALK-1 reduces delta-cell endoplasmic reticulum and cytoplasmic calcium levels limiting somatostatin secretion. | 2018-01-31 | 10.1016/j.molmet.2018.01.016 | 11 | view | |
| Lu | Stem Cell Res | Single-cell RNA sequencing reveals metallothionein heterogeneity during hESC differentiation to definitive endoderm. | 2018-01-31 | 10.1016/j.scr.2018.01.015 | view | ||
| Gladka | Circulation | Single-Cell Sequencing of the Healthy and Diseased Heart Reveals Ckap4 as a New Modulator of Fibroblasts Activation. | 2018-01-31 | 10.1161/CIRCULATIONAHA.117.030742 | 12 | view | |
| Chiang | J. Allergy Clin. Immunol. | Single cell profiling of peanut-responsive T cells in peanut allergic subjects reveals heterogeneous effector Th2 subsets. | 2018-01-30 | 10.1016/j.jaci.2017.11.060 | view | ||
| Wu | Cancer Lett. | Single-cell Transcriptome Analyses Reveal Molecular Signals to Intrinsic and Acquired Paclitaxel Resistance in Esophageal Squamous Cancer Cells. | 2018-01-30 | 10.1016/j.canlet.2018.01.059 | 12 | view | |
| Khoramian Tusi | Exp. Hematol. | High throughput single-cell fate potential assay of murine hematopoietic progenitors in vitro. | 2018-01-30 | 10.1016/j.exphem.2018.01.005 | view | ||
| Martin-Gayo | Genome Biol. | A Reproducibility-Based Computational Framework Identifies an Inducible, Enhanced Antiviral State in Dendritic Cells from HIV-1 Elite Controllers. | 2018-01-29 | 10.1186/s13059-017-1385-x | 12 | view | |
| Sarrach | Sci Rep | Spatiotemporal patterning of EpCAM is important for murine embryonic endo- and mesodermal differentiation. | 2018-01-29 | 10.1038/s41598-018-20131-8 | 13 | view | |
| Wu | Cell. Mol. Immunol. | Epigenetic regulation in B-cell maturation and its dysregulation in autoimmunity. | 2018-01-29 | 10.1038/cmi.2017.133 | 24 | view | |
| Xiong | Oncotarget | Novel mutational landscapes and expression signatures of lung squamous cell carcinoma. | 2018-01-26 | 10.18632/oncotarget.23716 | 3 | view | |
| Murray | Wiley Interdiscip Rev Dev Biol | Systems biology of embryonic development: Prospects for a complete understanding of the Caenorhabditis elegans embryo. | 2018-01-25 | 10.1002/wdev.314 | 6 | view | |
| Lescroart | Science | Defining the earliest step of cardiovascular lineage segregation by single-cell RNA-seq. | 2018-01-25 | 10.1126/science.aao4174 | 96 | view | |
| Blum | Eur. J. Immunol. | Circulating plasmablasts are elevated and produce pathogenic anti-endothelial cell autoantibodies in idiopathic pulmonary arterial hypertension. | 2018-01-25 | 10.1002/eji.201747460 | 8 | view | |
| Leija-Salazar | Neuropathol. Appl. Neurobiol. | Somatic mutations in neurodegeneration. | 2018-01-25 | 10.1111/nan.12465 | 22 | view | |
| Cui | Nucleic Acids Res. | Fluctuation localization imaging-based fluorescence in situ hybridization (fliFISH) for accurate detection and counting of RNA copies in single cells. | 2018-01-25 | 10.1093/nar/gkx874 | 13 | view | |
| Achim | Mol. Biol. Evol. | Whole-body single-cell sequencing reveals transcriptional domains in the annelid larval body. | 2018-01-24 | 10.1093/molbev/msx336 | 16 | view | |
| Betsholtz | EMBO Mol Med | Cell-cell signaling in blood vessel development and function. | 2018-01-23 | 10.15252/emmm.201708610 | 5 | view | |
| Stévant | Mol. Cell. Endocrinol. | Single cell transcriptome sequencing: A new approach for the study of mammalian sex determination. | 2018-01-22 | 10.1016/j.mce.2018.01.013 | 5 | view | |
| Patil | Sci Immunol | Precursors of human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis. | 2018-01-19 | 10.1126/sciimmunol.aan8664 | 6 | view | |
| Risso | Nat Commun | A general and flexible method for signal extraction from single-cell RNA-seq data. | 2018-01-18 | 10.1038/s41467-017-02554-5 | 156 | view | |
| Sinha | Nucleic Acids Res. | dropClust: efficient clustering of ultra-large scRNA-seq data. | 2018-01-18 | 10.1093/nar/gky007 | 22 | view | |
| Kalish | Proc. Natl. Acad. Sci. U.S.A. | Single-cell transcriptomics of the developing lateral geniculate nucleus reveals insights into circuit assembly and refinement. | 2018-01-17 | 10.1073/pnas.1717871115 | 16 | view | |
| Muliaditan | Clin. Cancer Res. | Repurposing tin mesoporphyrin as an immune checkpoint inhibitor shows therapeutic efficacy in preclinical models of cancer. | 2018-01-16 | 10.1158/1078-0432.CCR-17-2587 | 4 | view | |
| Skelly | Cell Rep | Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart. | 2018-01-16 | 10.1016/j.celrep.2017.12.072 | 148 | view | |
| Ghahramani | Genome Biol. | Epidermal Wnt signalling regulates transcriptome heterogeneity and proliferative fate in neighbouring cells. | 2018-01-15 | 10.1186/s13059-017-1384-y | 11 | view | |
| Hochgerner | Nat. Neurosci. | Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing. | 2018-01-15 | 10.1038/s41593-017-0056-2 | 55 | view | |
| Pace | Science | The epigenetic control of stemness in CD8+ T cell fate commitment. | 2018-01-12 | 10.1126/science.aah6499 | view | ||
| Miragaia | Sci Rep | Single-cell RNA-sequencing resolves self-antigen expression during mTEC development. | 2018-01-12 | 10.1038/s41598-017-19100-4 | 8 | view | |
| Fiers | Brief Funct Genomics | Mapping gene regulatory networks from single-cell omics data. | 2018-01-12 | 10.1093/bfgp/elx046 | 56 | view | |
| Rodriguez-Fraticelli | Nature | Clonal analysis of lineage fate in native haematopoiesis. | 2018-01-11 | 10.1038/nature25168 | 142 | view | |
| Tirosh | Neuro-oncology | Dissecting human gliomas by single-cell RNA sequencing. | 2018-01-10 | 10.1093/neuonc/nox126 | 4 | view | |
| Ding | Genome Res. | Reconstructing differentiation networks and their regulation from time series single cell expression data. | 2018-01-09 | 10.1101/gr.225979.117 | 16 | view | |
| Chevée | Cell Rep | Variation in Activity State, Axonal Projection, and Position Define the Transcriptional Identity of Individual Neocortical Projection Neurons. | 2018-01-09 | 10.1016/j.celrep.2017.12.046 | 33 | view | |
| Liang | Nucleic Acids Res. | Polysome-profiling in small tissue samples. | 2018-01-09 | 10.1093/nar/gkx940 | 6 | view | |
| Maurer-Alcalá | MBio | Exploration of the Germline Genome of the Ciliate Chilodonella uncinata through Single-Cell Omics (Transcriptomics and Genomics). | 2018-01-09 | 10.1128/mBio.01836-17 | 10 | view | |
| Das | J. Clin. Invest. | Early B cell changes predict autoimmunity following combination immune checkpoint blockade. | 2018-01-08 | 10.1172/JCI96798 | 20 | view | |
| Basak | Proc. Natl. Acad. Sci. U.S.A. | Troy+ brain stem cells cycle through quiescence and regulate their number by sensing niche occupancy. | 2018-01-08 | 10.1073/pnas.1715911114 | view | ||
| Chen | Proc. Natl. Acad. Sci. U.S.A. | Reply to Edemir: Physiological regulation and single-cell RNA sequencing. | 2018-01-08 | 10.1073/pnas.1720333115 | view | ||
| Ibarra-Soria | Nat. Cell Biol. | Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation. | 2018-01-08 | 10.1038/s41556-017-0013-z | 48 | view | |
| Conrad | Adv. Exp. Med. Biol. | Single-Cell Expression Profiling and Proteomics of Primordial Germ Cells, Spermatogonial Stem Cells, Adult Germ Stem Cells, and Oocytes. | 2018-01-04 | 10.1007/5584_2017_117 | 3 | view | |
| Slowikowski | Curr Opin Rheumatol | Functional genomics of stromal cells in chronic inflammatory diseases. | 2018-01-01 | 10.1097/BOR.0000000000000455 | 8 | view | |
| Malone | Semin. Nephrol. | Bringing Renal Biopsy Interpretation Into the Molecular Age With Single-Cell RNA Sequencing. | 2018-01-01 | 10.1016/j.semnephrol.2017.09.005 | 17 | view | |
| Renthal | Cephalalgia | Localization of migraine susceptibility genes in human brain by single-cell RNA sequencing. | 2018-01-01 | 10.1177/0333102418762476 | 5 | view | |
| van den Bos | Int. J. Biochem. Cell Biol. | Single-cell sequencing to quantify genomic integrity in cancer. | 2018-01-01 | 10.1016/j.biocel.2017.09.016 | view | ||
| Barroso | Genetics | The Evolution of Gene-Specific Transcriptional Noise Is Driven by Selection at the Pathway Level. | 2018-01-01 | 10.1534/genetics.117.300467 | 3 | view | |
| Arlauckas | Theranostics | Arg1 expression defines immunosuppressive subsets of tumor-associated macrophages. | 2018-01-01 | 10.7150/thno.26888 | 39 | view | |
| Fergusson | Front Immunol | Maturing Human CD127+ CCR7+ PDL1+ Dendritic Cells Express AIRE in the Absence of Tissue Restricted Antigens. | 2018-01-01 | 10.3389/fimmu.2018.02902 | view | ||
| Tang | Interdiscip Sci | visnormsc: A Graphical User Interface to Normalize Single-cell RNA Sequencing Data. | 2017-12-26 | 10.1007/s12539-017-0277-9 | view | ||
| Yuzwa | Cell Rep | Developmental Emergence of Adult Neural Stem Cells as Revealed by Single-Cell Transcriptional Profiling. | 2017-12-26 | 10.1016/j.celrep.2017.12.017 | 21 | view | |
| D'Gama | Cell Rep | Somatic Mutations Activating the mTOR Pathway in Dorsal Telencephalic Progenitors Cause a Continuum of Cortical Dysplasias. | 2017-12-26 | 10.1016/j.celrep.2017.11.106 | view | ||
| Zong | Genome Biol. | Single-cell RNA-seq study determines the ontogeny of macrophages in glioblastomas. | 2017-12-21 | 10.1186/s13059-017-1375-z | 7 | view | |
| Zhao | Blood | Single-cell RNA-seq reveals a distinct transcriptome signature of aneuploid hematopoietic cells. | 2017-12-21 | 10.1182/blood-2017-08-803353 | 9 | view | |
| Bakken | BMC Bioinformatics | Cell type discovery and representation in the era of high-content single cell phenotyping. | 2017-12-21 | 10.1186/s12859-017-1977-1 | 18 | view | |
| Wu | DNA Cell Biol. | Clinical Applications of and Challenges in Single-Cell Analysis of Circulating Tumor Cells. | 2017-12-21 | 10.1089/dna.2017.3981 | 6 | view | |
| Müller | Genome Biol. | Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment. | 2017-12-20 | 10.1186/s13059-017-1362-4 | 89 | view | |
| Nguyen | Genome Med | Integrated Bayesian analysis of rare exonic variants to identify risk genes for schizophrenia and neurodevelopmental disorders. | 2017-12-20 | 10.1186/s13073-017-0497-y | 33 | view | |
| Alberti-Servera | EMBO J. | Single-cell RNA sequencing reveals developmental heterogeneity among early lymphoid progenitors. | 2017-12-15 | 10.15252/embj.201797105 | 23 | view | |
| Cho | Gene | Single cell transcriptome analysis of muscle satellite cells reveals widespread transcriptional heterogeneity. | 2017-12-15 | 10.1016/j.gene.2017.09.014 | 18 | view | |
| Yip | Nucleic Acids Res. | Linnorm: improved statistical analysis for single cell RNA-seq expression data. | 2017-12-15 | 10.1093/nar/gkx828 | 32 | view | |
| Gasch | PLoS Biol. | Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress. | 2017-12-14 | 10.1371/journal.pbio.2004050 | 12 | view | |
| Casasent | Cell | Multiclonal Invasion in Breast Tumors Identified by Topographic Single Cell Sequencing. | 2017-12-14 | 10.1016/j.cell.2017.12.007 | 101 | view | |
| Bonnardel | Curr. Opin. Immunol. | Developmental control of macrophage function. | 2017-12-13 | 10.1016/j.coi.2017.12.001 | 31 | view | |
| Phillips | Stem Cells | A novel approach to single cell RNA-seq analysis facilitates in silico gene reporting of human pluripotent stem cell-derived retinal cell types. | 2017-12-12 | 10.1002/stem.2755 | view | ||
| Horning | Cancer Res. | Single-cell RNA-seq reveals a subpopulation of prostate cancer cells with enhanced cell cycle-related transcription and attenuated androgen response. | 2017-12-12 | 10.1158/0008-5472.CAN-17-1924 | 6 | view | |
| Artegiani | Cell Rep | A Single-Cell RNA Sequencing Study Reveals Cellular and Molecular Dynamics of the Hippocampal Neurogenic Niche. | 2017-12-12 | 10.1016/j.celrep.2017.11.050 | 41 | view | |
| Chen | Circulation | Pathologic Stimulus Determines Lineage Commitment of Cardiac C-kit+ Cells. | 2017-12-12 | 10.1161/CIRCULATIONAHA.117.030137 | view | ||
| Bach | Nat Commun | Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing. | 2017-12-11 | 10.1038/s41467-017-02001-5 | 71 | view | |
| Kang | Nat. Biotechnol. | Multiplexed droplet single-cell RNA-sequencing using natural genetic variation. | 2017-12-11 | 10.1038/nbt.4042 | 172 | view | |
| Athanasiadis | Nat Commun | Single-cell RNA-sequencing uncovers transcriptional states and fate decisions in haematopoiesis. | 2017-12-11 | 10.1038/s41467-017-02305-6 | 21 | view | |
| Schwartzentruber | Nat. Genet. | Molecular and functional variation in iPSC-derived sensory neurons. | 2017-12-11 | 10.1038/s41588-017-0005-8 | 74 | view | |
| Schelker | Nat Commun | Estimation of immune cell content in tumour tissue using single-cell RNA-seq data. | 2017-12-11 | 10.1038/s41467-017-02289-3 | 81 | view | |
| Hrvatin | Nat. Neurosci. | Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex. | 2017-12-11 | 10.1038/s41593-017-0029-5 | 125 | view | |
| Gomes Fernandes | Hum. Reprod. | Human-specific subcellular compartmentalization of P-element induced wimpy testis-like (PIWIL) granules during germ cell development and spermatogenesis. | 2017-12-11 | 10.1093/humrep/dex365 | view | ||
| Cheng | Curr Opin Oncol | Medical bioinformatics in melanoma. | 2017-12-08 | 10.1097/CCO.0000000000000428 | view | ||
| Medaglia | Science | Spatial reconstruction of immune niches by combining photoactivatable reporters and scRNA-seq. | 2017-12-07 | 10.1126/science.aao4277 | 66 | view | |
| Hu | Mol. Cell | Dissecting Cell-Type Composition and Activity-Dependent Transcriptional State in Mammalian Brains by Massively Parallel Single-Nucleus RNA-Seq. | 2017-12-07 | 10.1016/j.molcel.2017.11.017 | 47 | view | |
| Tabib | J. Invest. Dermatol. | SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin. | 2017-12-06 | 10.1016/j.jid.2017.09.045 | 42 | view | |
| Trevino | Genome Biol Evol | High-resolution single-cell sequencing of malaria parasites. | 2017-12-06 | 10.1093/gbe/evx256 | 14 | view | |
| Yeldell | Org. Biomol. Chem. | Oligonucleotide modifications enhance probe stability for single cell transcriptome in vivo analysis (TIVA). | 2017-12-06 | 10.1039/c7ob02353g | 4 | view | |
| Zhu | Genome Med | Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists. | 2017-12-05 | 10.1186/s13073-017-0492-3 | 36 | view | |
| Cao | Genes (Basel) | scRNASeqDB: A Database for RNA-Seq Based Gene Expression Profiles in Human Single Cells. | 2017-12-05 | 10.3390/genes8120368 | 25 | view | |
| Han | Genome Res. | SIDR: simultaneous isolation and parallel sequencing of genomic DNA and total RNA from single cells. | 2017-12-05 | 10.1101/gr.223263.117 | 32 | view | |
| Swisa | Cell Metab. | Transcriptional Noise and Somatic Mutations in the Aging Pancreas. | 2017-12-05 | 10.1016/j.cmet.2017.11.009 | 1 | view | |
| Su | BMC Genomics | Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development. | 2017-12-04 | 10.1186/s12864-017-4342-x | 6 | view | |
| Fonseka | Curr. Opin. Immunol. | Leveraging blood and tissue CD4+ T cell heterogeneity at the single cell level to identify mechanisms of disease in rheumatoid arthritis. | 2017-12-01 | 10.1016/j.coi.2017.08.005 | view | ||
| Cadwell | Nat Protoc | Multimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq. | 2017-12-01 | 10.1038/nprot.2017.120 | 32 | view | |
| Shah | Mol Oncol | APE1/Ref-1 knockdown in pancreatic ductal adenocarcinoma - characterizing gene expression changes and identifying novel pathways using single-cell RNA sequencing. | 2017-12-01 | 10.1002/1878-0261.12138 | 8 | view | |
| Sisakhtnezhad | J. Cell. Physiol. | Comparative analysis of single-cell RNA sequencing data from mouse spermatogonial and mesenchymal stem cells to identify differentially expressed genes and transcriptional regulators of germline cells. | 2017-12-01 | 10.1002/jcp.26303 | 8 | view | |
| Schwalie | Stem Cells | Cross-Tissue Identification of Somatic Stem and Progenitor Cells Using a Single-Cell RNA-Sequencing Derived Gene Signature. | 2017-12-01 | 10.1002/stem.2719 | 2 | view | |
| Mancarci | eNeuro | Cross-Laboratory Analysis of Brain Cell Type Transcriptomes with Applications to Interpretation of Bulk Tissue Data. | 2017-12-01 | 10.1523/ENEURO.0212-17.2017 | 16 | view | |
| Wu | Kidney Int. | The promise of single-cell RNA sequencing for kidney disease investigation. | 2017-12-01 | 10.1016/j.kint.2017.06.033 | 28 | view | |
| Toledo | Br. J. Pharmacol. | Translation of WNT developmental programs into stem cell replacement strategies for the treatment of Parkinson's disease. | 2017-12-01 | 10.1111/bph.13871 | view | ||
| Pfeffer | Front Cell Neurosci | Correlating Anatomy and Function with Gene Expression in Individual Neurons by Combining in Vivo Labeling, Patch Clamp, and Single Cell RNA-seq. | 2017-12-01 | 10.3389/fncel.2017.00376 | 3 | view | |
| Han | Biomed Res Int | Functional Virtual Flow Cytometry: A Visual Analytic Approach for Characterizing Single-Cell Gene Expression Patterns. | 2017-12-01 | 10.1155/2017/3035481 | 2 | view | |
| Cuevas-Diaz Duran | Clin Transl Med | Single-cell RNA-sequencing of the brain. | 2017-12-01 | 10.1186/s40169-017-0150-9 | view | ||
| Sun | Parasite | Phylogenomic analysis of Balantidium ctenopharyngodoni (Ciliophora, Litostomatea) based on single-cell transcriptome sequencing. | 2017-12-01 | 10.1051/parasite/2017043 | 4 | view | |
| Haliburton | PLoS ONE | Genetic interaction mapping with microfluidic-based single cell sequencing. | 2017-12-01 | 10.1371/journal.pone.0171302 | 8 | view | |
| van Bruggen | Curr. Opin. Neurobiol. | Single-cell transcriptomic analysis of oligodendrocyte lineage cells. | 2017-12-01 | 10.1016/j.conb.2017.10.005 | view | ||
| Wang | Clin Transl Med | Single cell sequencing: a distinct new field. | 2017-12-01 | 10.1186/s40169-017-0139-4 | 31 | view | |
| Ellsworth | Clin Transl Med | Single-cell sequencing and tumorigenesis: improved understanding of tumor evolution and metastasis. | 2017-12-01 | 10.1186/s40169-017-0145-6 | 18 | view | |
| Sun | Nat Commun | Inference of differentiation time for single cell transcriptomes using cell population reference data. | 2017-11-30 | 10.1038/s41467-017-01860-2 | 12 | view | |
| Shi | J. Neurosci. | Neuromedin B Expression Defines the Mouse Retrotrapezoid Nucleus. | 2017-11-29 | 10.1523/JNEUROSCI.2055-17.2017 | 18 | view | |
| Hochgerner | Sci Rep | STRT-seq-2i: dual-index 5' single cell and nucleus RNA-seq on an addressable microwell array. | 2017-11-27 | 10.1038/s41598-017-16546-4 | view | ||
| Boufaied | Sci Rep | Identification of genes expressed in a mesenchymal subset regulating prostate organogenesis using tissue and single cell transcriptomics. | 2017-11-27 | 10.1038/s41598-017-16685-8 | view | ||
| Griffiths | BMC Genomics | Mosaic autosomal aneuploidies are detectable from single-cell RNAseq data. | 2017-11-25 | 10.1186/s12864-017-4253-x | view | ||
| Magella | Dev. Biol. | Cross-platform single cell analysis of kidney development shows stromal cells express Gdnf. | 2017-11-25 | 10.1016/j.ydbio.2017.11.006 | 38 | view | |
| Easton | BMC Genomics | Genome-wide segregation of single nucleotide and structural variants into single cancer cells. | 2017-11-25 | 10.1186/s12864-017-4286-1 | 2 | view | |
| Cook | Nucleic Acids Res. | The European Bioinformatics Institute in 2017: data coordination and integration. | 2017-11-25 | 10.1093/nar/gkx1154 | 23 | view | |
| Chen | Mol. Aspects Med. | Constructing cell lineages from single-cell transcriptomes. | 2017-11-24 | 10.1016/j.mam.2017.10.004 | 5 | view | |
| Liu | BMC Cancer | Multi-region and single-cell sequencing reveal variable genomic heterogeneity in rectal cancer. | 2017-11-23 | 10.1186/s12885-017-3777-4 | 12 | view | |
| Spanjaard | Curr. Opin. Cell Biol. | Methods for lineage tracing on the organism-wide level. | 2017-11-22 | 10.1016/j.ceb.2017.11.004 | 14 | view | |
| Faure | Cell Syst | Systematic Analysis of the Determinants of Gene Expression Noise in Embryonic Stem Cells. | 2017-11-22 | 10.1016/j.cels.2017.10.003 | 27 | view | |
| Ivanovitch | J Cardiovasc Dev Dis | Growth and Morphogenesis during Early Heart Development in Amniotes. | 2017-11-22 | 10.3390/jcdd4040020 | 4 | view | |
| Zhu | Cell Biol. Toxicol. | Progress and challenges of sequencing and analyzing circulating tumor cells. | 2017-11-22 | 10.1007/s10565-017-9418-5 | 36 | view | |
| Prykhozhij | Curr Gene Ther | New Developments in CRISPR/Cas-based Functional Genomics and their Implications for Research using Zebrafish. | 2017-11-21 | 10.2174/1566523217666171121164132 | 8 | view | |
| Turaj | Cancer Cell | Antibody Tumor Targeting Is Enhanced by CD27 Agonists through Myeloid Recruitment. | 2017-11-21 | 10.1016/j.ccell.2017.11.001 | 22 | view | |
| Herbach | BMC Syst Biol | Inferring gene regulatory networks from single-cell data: a mechanistic approach. | 2017-11-21 | 10.1186/s12918-017-0487-0 | 12 | view | |
| Wang | Anal. Chem. | Raman-Activated Droplet Sorting (RADS) for Label-Free High-Throughput Screening of Microalgal Single-Cells. | 2017-11-21 | 10.1021/acs.analchem.7b03884 | 16 | view | |
| Allison | Nat Rev Nephrol | Gene expression: Single-cell RNA sequencing of collecting duct cells. | 2017-11-20 | 10.1038/nrneph.2017.163 | view | ||
| Kurata | J. Hum. Genet. | CRISPR/Cas9 library screening for drug target discovery. | 2017-11-20 | 10.1038/s10038-017-0376-9 | 5 | view | |
| McCormick | Antioxid. Redox Signal. | Recent Advances in the Systems Biology of Aging. | 2017-11-20 | 10.1089/ars.2017.7367 | 1 | view | |
| Li | Cell | Classifying Drosophila Olfactory Projection Neuron Subtypes by Single-Cell RNA Sequencing. | 2017-11-16 | 10.1016/j.cell.2017.10.019 | 84 | view | |
| Angelos | Stem Cells | Single Cell Resolution of Human Hematoendothelial Cells Defines Transcriptional Signatures of Hemogenic Endothelium. | 2017-11-15 | 10.1002/stem.2739 | 10 | view | |
| Chen | Proc. Natl. Acad. Sci. U.S.A. | Transcriptomes of major renal collecting duct cell types in mouse identified by single-cell RNA-seq. | 2017-11-14 | 10.1073/pnas.1710964114 | 50 | view | |
| Racle | Elife | Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data. | 2017-11-13 | 10.7554/eLife.26476 | 73 | view | |
| Zhao | BMC Genomics | Characteristics of allelic gene expression in human brain cells from single-cell RNA-seq data analysis. | 2017-11-10 | 10.1186/s12864-017-4261-x | 5 | view | |
| Baran-Gale | Brief Funct Genomics | Experimental design for single-cell RNA sequencing. | 2017-11-08 | 10.1093/bfgp/elx035 | 30 | view | |
| Dagogo-Jack | Nat Rev Clin Oncol | Tumour heterogeneity and resistance to cancer therapies. | 2017-11-08 | 10.1038/nrclinonc.2017.166 | 630 | view | |
| Buettner | Genome Biol. | f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq. | 2017-11-07 | 10.1186/s13059-017-1334-8 | 16 | view | |
| Herring | Cell Syst | Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut. | 2017-11-07 | 10.1016/j.cels.2017.10.012 | 48 | view | |
| Ma | Curr. Opin. Neurobiol. | Neural lineage tracing in the mammalian brain. | 2017-11-07 | 10.1016/j.conb.2017.10.013 | 16 | view | |
| Acosta | Stem Cell Res Ther | Single cell transcriptomics suggest that human adipocyte progenitor cells constitute a homogeneous cell population. | 2017-11-07 | 10.1186/s13287-017-0701-4 | 19 | view | |
| King | Nat. Med. | IRF3 and type I interferons fuel a fatal response to myocardial infarction. | 2017-11-06 | 10.1038/nm.4428 | 114 | view | |
| Hicks | Biostatistics | Missing data and technical variability in single-cell RNA-sequencing experiments. | 2017-11-06 | 10.1093/biostatistics/kxx053 | 84 | view | |
| Porubsky | Nat Commun | Dense and accurate whole-chromosome haplotyping of individual genomes. | 2017-11-03 | 10.1038/s41467-017-01389-4 | 45 | view | |
| Calderon | Am. J. Hum. Genet. | Inferring Relevant Cell Types for Complex Traits by Using Single-Cell Gene Expression. | 2017-11-02 | 10.1016/j.ajhg.2017.09.009 | 27 | view | |
| Li | Nucleic Acids Res. | Network embedding-based representation learning for single cell RNA-seq data. | 2017-11-02 | 10.1093/nar/gkx750 | 4 | view | |
| Jia | Nucleic Acids Res. | Accounting for technical noise in differential expression analysis of single-cell RNA sequencing data. | 2017-11-02 | 10.1093/nar/gkx754 | 23 | view | |
| Liu | Nature | Single-cell transcriptomics reconstructs fate conversion from fibroblast to cardiomyocyte. | 2017-11-02 | 10.1038/nature24454 | 28 | view | |
| Poran | Nature | Single-cell RNA sequencing reveals a signature of sexual commitment in malaria parasites. | 2017-11-02 | 10.1038/nature24280 | 30 | view | |
| Rantalainen | Brief Funct Genomics | Application of single-cell sequencing in human cancer. | 2017-11-02 | 10.1093/bfgp/elx036 | 6 | view | |
| Lun | Genome Res. | Assessing the reliability of spike-in normalization for analyses of single-cell RNA sequencing data. | 2017-11-01 | 10.1101/gr.222877.117 | 30 | view | |
| Wang | Genome Res. | Single-cell gene expression analysis reveals regulators of distinct cell subpopulations among developing human neurons. | 2017-11-01 | 10.1101/gr.223313.117 | 14 | view | |
| Brady | Nat Commun | Combating subclonal evolution of resistant cancer phenotypes. | 2017-11-01 | 10.1038/s41467-017-01174-3 | 34 | view | |
| Vieth | Bioinformatics | powsimR: power analysis for bulk and single cell RNA-seq experiments. | 2017-11-01 | 10.1093/bioinformatics/btx435 | 46 | view | |
| Aibar | Nat. Methods | SCENIC: single-cell regulatory network inference and clustering. | 2017-11-01 | 10.1038/nmeth.4463 | 332 | view | |
| Lu | Kidney Int. | Genome-wide identification of genes essential for podocyte cytoskeletons based on single-cell RNA sequencing. | 2017-11-01 | 10.1016/j.kint.2017.04.022 | 29 | view | |
| Balakrishnan | Biol. Blood Marrow Transplant. | Proinflammatory Dual Receptor T Cells in Chronic Graft-versus-Host Disease. | 2017-11-01 | 10.1016/j.bbmt.2017.07.016 | 1 | view | |
| Heintze | Nat Rev Nephrol | Developmental biology: Single-cell RNA sequencing identifies novel kidney cell types in zebrafish. | 2017-11-01 | 10.1038/nrneph.2017.137 | view | ||
| Yamamoto | Nat. Methods | Long-term expansion of alveolar stem cells derived from human iPS cells in organoids. | 2017-11-01 | 10.1038/nmeth.4448 | 50 | view | |
| Schiffer | Kidney Int. | Going single but not solo with podocytes: potentials, limitations, and pitfalls of single-cell analysis. | 2017-11-01 | 10.1016/j.kint.2017.05.033 | view | ||
| Wei | Int. J. Biochem. Cell Biol. | A short review of variants calling for single-cell-sequencing data with applications. | 2017-11-01 | 10.1016/j.biocel.2017.09.018 | 2 | view | |
| Kuipers | Genome Res. | Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors. | 2017-11-01 | 10.1101/gr.220707.117 | 30 | view | |
| Gawronski | Wiley Interdiscip Rev RNA | Single cell transcriptomics of noncoding RNAs and their cell-specificity. | 2017-11-01 | 10.1002/wrna.1433 | 5 | view | |
| Liu | Stem Cells Dev. | Single-Cell Sequencing Technologies for Cardiac Stem Cell Studies. | 2017-11-01 | 10.1089/scd.2017.0050 | 6 | view | |
| Nguyen | PLoS ONE | Diversity amongst trigeminal neurons revealed by high throughput single cell sequencing. | 2017-11-01 | 10.1371/journal.pone.0185543 | 42 | view | |
| Darmanis | Cell Rep | Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma. | 2017-10-31 | 10.1016/j.celrep.2017.10.030 | 105 | view | |
| Savage | Cell Rep | A Targetable EGFR-Dependent Tumor-Initiating Program in Breast Cancer. | 2017-10-31 | 10.1016/j.celrep.2017.10.015 | 23 | view | |
| Woyke | Nat. Methods | The trajectory of microbial single-cell sequencing. | 2017-10-31 | 10.1038/nmeth.4469 | 10 | view | |
| Walker | Nat. Rev. Immunol. | TH2 cell development and function. | 2017-10-30 | 10.1038/nri.2017.118 | view | ||
| Lu | Mol. Ther. | An Efficient Single-Cell RNA-Seq Approach to Identify Neoantigen-Specific T Cell Receptors. | 2017-10-28 | 10.1016/j.ymthe.2017.10.018 | 22 | view | |
| Avital | Genome Biol. | scDual-Seq: mapping the gene regulatory program of Salmonella infection by host and pathogen single-cell RNA-sequencing. | 2017-10-27 | 10.1186/s13059-017-1340-x | 28 | view | |
| Bick | Proc. Natl. Acad. Sci. U.S.A. | Cardiovascular homeostasis dependence on MICU2, a regulatory subunit of the mitochondrial calcium uniporter. | 2017-10-24 | 10.1073/pnas.1711303114 | 6 | view | |
| Semrau | Nat Commun | Dynamics of lineage commitment revealed by single-cell transcriptomics of differentiating embryonic stem cells. | 2017-10-23 | 10.1038/s41467-017-01076-4 | 69 | view | |
| Chen | Sci Rep | Controlling for Confounding Effects in Single Cell RNA Sequencing Studies Using both Control and Target Genes. | 2017-10-19 | 10.1038/s41598-017-13665-w | 13 | view | |
| Golkaram | Sci Rep | The Role of Chromatin Density in Cell Population Heterogeneity during Stem Cell Differentiation. | 2017-10-17 | 10.1038/s41598-017-13731-3 | 4 | view | |
| Abugessaisa | Nucleic Acids Res. | SCPortalen: human and mouse single-cell centric database. | 2017-10-17 | 10.1093/nar/gkx949 | 18 | view | |
| Aarts | Genes Dev. | Coupling shRNA screens with single-cell RNA-seq identifies a dual role for mTOR in reprogramming-induced senescence. | 2017-10-15 | 10.1101/gad.297796.117 | 18 | view | |
| Chlis | Bioinformatics | Model-based branching point detection in single-cell data by K-branches clustering. | 2017-10-15 | 10.1093/bioinformatics/btx325 | 8 | view | |
| Karaiskos | Science | The Drosophila embryo at single-cell transcriptome resolution. | 2017-10-13 | 10.1126/science.aan3235 | 131 | view | |
| Wu | Neuron | Detecting Activated Cell Populations Using Single-Cell RNA-Seq. | 2017-10-11 | 10.1016/j.neuron.2017.09.026 | 67 | view | |
| Gilligan | Lab Chip | Single cell sequencing: An engineer and business person's perspective on how we got here. | 2017-10-11 | 10.1039/c7lc90095c | view | ||
| Mathys | Cell Rep | Temporal Tracking of Microglia Activation in Neurodegeneration at Single-Cell Resolution. | 2017-10-10 | 10.1016/j.celrep.2017.09.039 | 160 | view | |
| Honda | Elife | Molecular architecture underlying fluid absorption by the developing inner ear. | 2017-10-10 | 10.7554/eLife.26851 | 10 | view | |
| Briggs | Elife | Mouse embryonic stem cells can differentiate via multiple paths to the same state. | 2017-10-09 | 10.7554/eLife.26945 | 30 | view | |
| Stubbington | Science | Single-cell transcriptomics to explore the immune system in health and disease. | 2017-10-06 | 10.1126/science.aan6828 | 123 | view | |
| Rizzetto | Sci Rep | Impact of sequencing depth and read length on single cell RNA sequencing data of T cells. | 2017-10-06 | 10.1038/s41598-017-12989-x | 32 | view | |
| Lein | Science | The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing. | 2017-10-06 | 10.1126/science.aan6827 | 137 | view | |
| Enge | Cell | Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns. | 2017-10-05 | 10.1016/j.cell.2017.09.004 | 91 | view | |
| Guo | Cell Stem Cell | Chromatin and Single-Cell RNA-Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development. | 2017-10-05 | 10.1016/j.stem.2017.09.003 | 78 | view | |
| Hayashi | Oncotarget | Size-based detection of sarcoma circulating tumor cells and cell clusters. | 2017-10-03 | 10.18632/oncotarget.20697 | 14 | view | |
| Yang | BMC Genomics | SAIC: an iterative clustering approach for analysis of single cell RNA-seq data. | 2017-10-03 | 10.1186/s12864-017-4019-5 | 7 | view | |
| Zhao | BMC Genomics | The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: summary and innovation in genomics. | 2017-10-03 | 10.1186/s12864-017-4018-6 | 3 | view | |
| Dvoryanchikov | Nat Commun | Transcriptomes and neurotransmitter profiles of classes of gustatory and somatosensory neurons in the geniculate ganglion. | 2017-10-02 | 10.1038/s41467-017-01095-1 | 16 | view | |
| Tang | J. Exp. Med. | Dissecting hematopoietic and renal cell heterogeneity in adult zebrafish at single-cell resolution using RNA sequencing. | 2017-10-02 | 10.1084/jem.20170976 | 42 | view | |
| Adam | Development | Psychrophilic proteases dramatically reduce single-cell RNA-seq artifacts: a molecular atlas of kidney development. | 2017-10-01 | 10.1242/dev.151142 | 69 | view | |
| Glass | Mol Metab | Single-cell RNA-sequencing reveals a distinct population of proglucagon-expressing cells specific to the mouse upper small intestine. | 2017-10-01 | 10.1016/j.molmet.2017.07.014 | 26 | view | |
| Rato | PLoS Pathog. | Single-cell analysis identifies cellular markers of the HIV permissive cell. | 2017-10-01 | 10.1371/journal.ppat.1006678 | 19 | view | |
| Gardeux | Bioinformatics | ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data. | 2017-10-01 | 10.1093/bioinformatics/btx337 | 30 | view | |
| Johnson | Pac Symp Biocomput | MAPPING NEURONAL CELL TYPES USING INTEGRATIVE MULTI-SPECIES MODELING OF HUMAN AND MOUSE SINGLE CELL RNA SEQUENCING. | 2017-10-01 | 10.1142/9789813207813_0055 | 3 | view | |
| Johnson | J. Neurovirol. | Lack of human cytomegalovirus expression in single cells from glioblastoma tumors and cell lines. | 2017-10-01 | 10.1007/s13365-017-0543-y | 6 | view | |
| Tripathi | Int. J. Biochem. Cell Biol. | A computational integrative approach based on alternative splicing analysis to compare immortalized and primary cancer cells. | 2017-10-01 | 10.1016/j.biocel.2017.07.010 | 2 | view | |
| Tripathy | PLoS Comput. Biol. | Transcriptomic correlates of neuron electrophysiological diversity. | 2017-10-01 | 10.1371/journal.pcbi.1005814 | 9 | view | |
| Medeiros | Mol. Ecol. | Single-cell sequencing unveils the lifestyle and CRISPR-based population history of Hydrotalea sp. in acid mine drainage. | 2017-10-01 | 10.1111/mec.14294 | 5 | view | |
| Natarajan | Curr. Opin. Genet. Dev. | Single cell transcriptomics of pluripotent stem cells: reprogramming and differentiation. | 2017-10-01 | 10.1016/j.gde.2017.06.003 | 10 | view | |
| Behjati | Nat Rev Clin Oncol | Genetics: Taking single-cell transcriptomics to the bedside. | 2017-10-01 | 10.1038/nrclinonc.2017.117 | 2 | view | |
| Weaver | BioTechniques | SEQUENCING BRAIN CELLS. | 2017-10-01 | 10.2144/000114600 | view | ||
| Lin | Nucleic Acids Res. | Using neural networks for reducing the dimensions of single-cell RNA-Seq data. | 2017-09-29 | 10.1093/nar/gkx681 | 41 | view | |
| Xiao | Stem Cell Res Ther | Microbiota regulates bone marrow mesenchymal stem cell lineage differentiation and immunomodulation. | 2017-09-29 | 10.1186/s13287-017-0670-7 | 2 | view | |
| van den Brink | Nat. Methods | Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations. | 2017-09-29 | 10.1038/nmeth.4437 | view | ||
| Felmlee | Hepatology | Zooming in on Liver Zonation. | 2017-09-27 | 10.1002/hep.29554 | view | ||
| Wallrapp | Nature | The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation. | 2017-09-21 | 10.1038/nature24029 | 143 | view | |
| Shalek | Sci Transl Med | Single-cell analyses to tailor treatments. | 2017-09-20 | 10.1126/scitranslmed.aan4730 | 18 | view | |
| Afik | Nucleic Acids Res. | Targeted reconstruction of T cell receptor sequence from single cell RNA-seq links CDR3 length to T cell differentiation state. | 2017-09-19 | 10.1093/nar/gkx615 | 36 | view | |
| Zafar | Genome Biol. | SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models. | 2017-09-19 | 10.1186/s13059-017-1311-2 | 44 | view | |
| Zappia | Genome Biol. | Splatter: simulation of single-cell RNA sequencing data. | 2017-09-12 | 10.1186/s13059-017-1305-0 | 139 | view | |
| Chen | Curr Protoc Mouse Biol | Profiling of Single-Cell Transcriptomes. | 2017-09-08 | 10.1002/cpmo.30 | 7 | view | |
| Zhou | Cell Tissue Res. | Lessons from single-cell transcriptome analysis of oxygen-sensing cells. | 2017-09-08 | 10.1007/s00441-017-2682-0 | 5 | view | |
| Zepp | Cell | Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung. | 2017-09-07 | 10.1016/j.cell.2017.07.034 | 126 | view | |
| Xiang | Cell Stem Cell | Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration. | 2017-09-07 | 10.1016/j.stem.2017.07.007 | 94 | view | |
| Lee | Cell | Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6. | 2017-09-07 | 10.1016/j.cell.2017.07.028 | 80 | view | |
| Moreira de Mello | Sci Rep | Early X chromosome inactivation during human preimplantation development revealed by single-cell RNA-sequencing. | 2017-09-07 | 10.1038/s41598-017-11044-z | view | ||
| Jaakkola | Brief. Bioinformatics | Comparison of methods to detect differentially expressed genes between single-cell populations. | 2017-09-01 | 10.1093/bib/bbw057 | 35 | view | |
| Park | Toxicol. Appl. Pharmacol. | Single-cell RNA sequencing reveals an altered gene expression pattern as a result of CRISPR/cas9-mediated deletion of Gene 33/Mig6 and chronic exposure to hexavalent chromium in human lung epithelial cells. | 2017-09-01 | 10.1016/j.taap.2017.07.003 | 5 | view | |
| Shugay | Nucleic Acids Res. | VDJdb: a curated database of T-cell receptor sequences with known antigen specificity. | 2017-09-01 | 10.1093/nar/gkx760 | 101 | view | |
| Stoeckius | Nat. Methods | Simultaneous epitope and transcriptome measurement in single cells. | 2017-09-01 | 10.1038/nmeth.4380 | 379 | view | |
| Dai | J. Assist. Reprod. Genet. | Time-lapse observation and transcriptome analysis of a case with repeated multiple pronuclei after IVF/ICSI. | 2017-09-01 | 10.1007/s10815-017-0972-9 | view | ||
| Benitez | Int. J. Biochem. Cell Biol. | Revealing allele-specific gene expression by single-cell transcriptomics. | 2017-09-01 | 10.1016/j.biocel.2017.05.029 | 11 | view | |
| Wu | Curr Top Med Chem | Single-Cell Sequencing for Drug Discovery and Drug Development. | 2017-09-01 | 10.2174/1568026617666161116145358 | 3 | view | |
| Perland | Open Biol | Characteristics of 29 novel atypical solute carriers of major facilitator superfamily type: evolutionary conservation, predicted structure and neuronal co-expression. | 2017-09-01 | 10.1098/rsob.170142 | 16 | view | |
| Tritschler | Mol Metab | Systematic single-cell analysis provides new insights into heterogeneity and plasticity of the pancreas. | 2017-09-01 | 10.1016/j.molmet.2017.06.021 | 32 | view | |
| Kang | Mol. Biol. Evol. | Between a Pod and a Hard Test: The Deep Evolution of Amoebae. | 2017-09-01 | 10.1093/molbev/msx162 | 77 | view | |
| Arzalluz-Luque | Int. J. Biochem. Cell Biol. | Delineating biological and technical variance in single cell expression data. | 2017-09-01 | 10.1016/j.biocel.2017.07.006 | 7 | view | |
| Cao | Int. J. Biochem. Cell Biol. | Current research development of single cell genome in urological tumor. | 2017-09-01 | 10.1016/j.biocel.2017.08.003 | 1 | view | |
| Kidd | Trends Immunol. | Environments Tune and Select Cellular Diversity. | 2017-09-01 | 10.1016/j.it.2017.07.006 | view | ||
| Khomtchouk | PLoS ONE | shinyheatmap: Ultra fast low memory heatmap web interface for big data genomics. | 2017-09-01 | 10.1371/journal.pone.0176334 | 44 | view | |
| Liu | Int. J. Biol. Sci. | Current Progresses of Single Cell DNA Sequencing in Breast Cancer Research. | 2017-09-01 | 10.7150/ijbs.19627 | 7 | view | |
| Kato | R Soc Open Sci | Sweepstake evolution revealed by population-genetic analysis of copy-number alterations in single genomes of breast cancer. | 2017-09-01 | 10.1098/rsos.171060 | 5 | view | |
| Mitchell | Semin. Cell Dev. Biol. | Enhancing our brains: Genomic mechanisms underlying cortical evolution. | 2017-08-31 | 10.1016/j.semcdb.2017.08.045 | 19 | view | |
| Zhang | Biosci. Rep. | The comparison of the performance of four whole genome amplification kits on ion proton platform in copy number variation detection. | 2017-08-31 | 10.1042/BSR20170252 | 8 | view | |
| Zhang | Sci Rep | A Total-variation Constrained Permutation Model for Revealing Common Copy Number Patterns. | 2017-08-29 | 10.1038/s41598-017-09139-8 | view | ||
| Mackenzie | Nature | cGAS surveillance of micronuclei links genome instability to innate immunity. | 2017-08-24 | 10.1038/nature23449 | 248 | view | |
| Baslan | Nat. Rev. Cancer | Unravelling biology and shifting paradigms in cancer with single-cell sequencing. | 2017-08-24 | 10.1038/nrc.2017.58 | 86 | view | |
| Haque | Genome Med | A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications. | 2017-08-18 | 10.1186/s13073-017-0467-4 | 152 | view | |
| Zhou | Sci Rep | Extracting Intercellular Signaling Network of Cancer Tissues using Ligand-Receptor Expression Patterns from Whole-tumor and Single-cell Transcriptomes. | 2017-08-18 | 10.1038/s41598-017-09307-w | 28 | view | |
| Sloan | Neuron | Human Astrocyte Maturation Captured in 3D Cerebral Cortical Spheroids Derived from Pluripotent Stem Cells. | 2017-08-16 | 10.1016/j.neuron.2017.07.035 | 144 | view | |
| Shaham | Bioinformatics | Removal of batch effects using distribution-matching residual networks. | 2017-08-15 | 10.1093/bioinformatics/btx196 | 42 | view | |
| Rashid | Bioinformatics | TASIC: determining branching models from time series single cell data. | 2017-08-15 | 10.1093/bioinformatics/btx173 | 21 | view | |
| Gao | Nat Commun | Nanogrid single-nucleus RNA sequencing reveals phenotypic diversity in breast cancer. | 2017-08-09 | 10.1038/s41467-017-00244-w | 30 | view | |
| Sukumaran | Sci Rep | Whole transcriptome profiling of taste bud cells. | 2017-08-08 | 10.1038/s41598-017-07746-z | 18 | view | |
| Zhu | Oncotarget | Advances in single-cell RNA sequencing and its applications in cancer research. | 2017-08-08 | 10.18632/oncotarget.17893 | 29 | view | |
| Kokkinopoulos | Stem Cell Reports | Adventitial SCA-1+ Progenitor Cell Gene Sequencing Reveals the Mechanisms of Cell Migration in Response to Hyperlipidemia. | 2017-08-08 | 10.1016/j.stemcr.2017.06.011 | 16 | view | |
| Papalexi | Nat. Rev. Immunol. | Single-cell RNA sequencing to explore immune cell heterogeneity. | 2017-08-07 | 10.1038/nri.2017.76 | 249 | view | |
| Sun | Bioinformatics | DIMM-SC: a Dirichlet mixture model for clustering droplet-based single cell transcriptomic data. | 2017-08-02 | 10.1093/bioinformatics/btx490 | 21 | view | |
| Mohammed | Cell Rep | Single-Cell Landscape of Transcriptional Heterogeneity and Cell Fate Decisions during Mouse Early Gastrulation. | 2017-08-01 | 10.1016/j.celrep.2017.07.009 | 36 | view | |
| Rahman | J. Clin. Invest. | Inflammatory Ly6Chi monocytes and their conversion to M2 macrophages drive atherosclerosis regression. | 2017-08-01 | 10.1172/JCI75005 | 20 | view | |
| Rostom | FEBS Lett. | Computational approaches for interpreting scRNA-seq data. | 2017-08-01 | 10.1002/1873-3468.12684 | 23 | view | |
| Matsumoto | Bioinformatics | SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation. | 2017-08-01 | 10.1093/bioinformatics/btx194 | 56 | view | |
| Lu | Kidney Int. | Single-cell RNA-sequence analysis of mouse glomerular mesangial cells uncovers mesangial cell essential genes. | 2017-08-01 | 10.1016/j.kint.2017.01.016 | 23 | view | |
| Zhu | PeerJ | Detecting heterogeneity in single-cell RNA-Seq data by non-negative matrix factorization. | 2017-08-01 | 10.7717/peerj.2888 | 15 | view | |
| Hunter | Front Genet | Evidence for Loss in Identity, De-Differentiation, and Trans-Differentiation of Islet β-Cells in Type 2 Diabetes. | 2017-08-01 | 10.3389/fgene.2017.00035 | 18 | view | |
| Phipson | F1000Res | Gene length and detection bias in single cell RNA sequencing protocols. | 2017-08-01 | 10.12688/f1000research.11290.1 | 18 | view | |
| Basu | SLAS Technol | Digital Assays Part II: Digital Protein and Cell Assays. | 2017-08-01 | 10.1177/2472630317705681 | 8 | view | |
| Dal Molin | Front Genet | Single-Cell RNA-Sequencing: Assessment of Differential Expression Analysis Methods. | 2017-08-01 | 10.3389/fgene.2017.00062 | view | ||
| Müller | Front Genet | Single-Cell mRNA Sequencing in Cancer Research: Integrating the Genomic Fingerprint. | 2017-08-01 | 10.3389/fgene.2017.00073 | 15 | view | |
| E Hirbec | Front Aging Neurosci | Microglia Responses in Acute and Chronic Neurological Diseases: What Microglia-Specific Transcriptomic Studies Taught (and did Not Teach) Us. | 2017-08-01 | 10.3389/fnagi.2017.00227 | view | ||
| Xue | Nat. Med. | An approach to suppress the evolution of resistance in BRAFV600E-mutant cancer. | 2017-08-01 | 10.1038/nm.4369 | view | ||
| Gao | Genome Res. | Single-cell sequencing deciphers a convergent evolution of copy number alterations from primary to circulating tumor cells. | 2017-08-01 | 10.1101/gr.216788.116 | 33 | view | |
| Kim | Exp. Hematol. | CBP/Catenin antagonists: Targeting LSCs' Achilles heel. | 2017-08-01 | 10.1016/j.exphem.2017.04.010 | view | ||
| Dentro | Cold Spring Harb Perspect Med | Principles of Reconstructing the Subclonal Architecture of Cancers. | 2017-08-01 | 10.1101/cshperspect.a026625 | 5 | view | |
| Vandin | Front Genet | Computational Methods for Characterizing Cancer Mutational Heterogeneity. | 2017-08-01 | 10.3389/fgene.2017.00083 | 14 | view | |
| Shi | Protein Cell | Single-cell transcriptomics reveals gene signatures and alterations associated with aging in distinct neural stem/progenitor cell subpopulations. | 2017-07-26 | 10.1007/s13238-017-0450-2 | 17 | view | |
| Zhang | Proc. Natl. Acad. Sci. U.S.A. | Functional characterization of human pluripotent stem cell-derived arterial endothelial cells. | 2017-07-25 | 10.1073/pnas.1702295114 | 37 | view | |
| Klein | Lab Chip | InDrops and Drop-seq technologies for single-cell sequencing. | 2017-07-25 | 10.1039/c7lc90070h | 10 | view | |
| Weitz | Lab Chip | Perspective on droplet-based single-cell sequencing. | 2017-07-25 | 10.1039/c7lc90069d | 1 | view | |
| Rato | Virus Res. | Exploring viral infection using single-cell sequencing. | 2017-07-15 | 10.1016/j.virusres.2016.10.016 | 13 | view | |
| Malenczyk | EMBO J. | A TRPV1-to-secretagogin regulatory axis controls pancreatic β-cell survival by modulating protein turnover. | 2017-07-14 | 10.15252/embj.201695347 | 24 | view | |
| Hosokawa | Sci Rep | Massively parallel whole genome amplification for single-cell sequencing using droplet microfluidics. | 2017-07-12 | 10.1038/s41598-017-05436-4 | 42 | view | |
| Hupe | Sci Signal | Gene expression profiles of brain endothelial cells during embryonic development at bulk and single-cell levels. | 2017-07-11 | 10.1126/scisignal.aag2476 | 26 | view | |
| Dorajoo | Sci Rep | Single-cell transcriptomics of East-Asian pancreatic islets cells. | 2017-07-10 | 10.1038/s41598-017-05266-4 | 4 | view | |
| Goldstein | BMC Genomics | Massively parallel nanowell-based single-cell gene expression profiling. | 2017-07-07 | 10.1186/s12864-017-3893-1 | 35 | view | |
| Zhang | Brief. Bioinformatics | SEGtool: a specifically expressed gene detection tool and applications in human tissue and single-cell sequencing data. | 2017-07-07 | 10.1093/bib/bbx074 | 8 | view | |
| Lechner | Cell Stem Cell | Recruited Monocytes and Type 2 Immunity Promote Lung Regeneration following Pneumonectomy. | 2017-07-06 | 10.1016/j.stem.2017.03.024 | 74 | view | |
| Cadwell | BMC Biol. | Q&A: using Patch-seq to profile single cells. | 2017-07-06 | 10.1186/s12915-017-0396-0 | 1269 | view | |
| Ding | G3 (Bethesda) | Assessment of Single Cell RNA-Seq Normalization Methods. | 2017-07-05 | 10.1534/g3.117.040683 | 7 | view | |
| Perkel | Nature | Single-cell sequencing made simple. | 2017-07-03 | 10.1038/547125a | 9 | view | |
| Suffiotti | Immunogenetics | Identification of innate lymphoid cells in single-cell RNA-Seq data. | 2017-07-01 | 10.1007/s00251-017-1002-x | 4 | view | |
| Shi | J. Comput. Biol. | Identifying Cell Subpopulations and Their Genetic Drivers from Single-Cell RNA-Seq Data Using a Biclustering Approach. | 2017-07-01 | 10.1089/cmb.2017.0049 | 5 | view | |
| Cerosaletti | J. Immunol. | Single-Cell RNA Sequencing Reveals Expanded Clones of Islet Antigen-Reactive CD4+ T Cells in Peripheral Blood of Subjects with Type 1 Diabetes. | 2017-07-01 | 10.4049/jimmunol.1700172 | view | ||
| Mpina | J. Immunol. | Controlled Human Malaria Infection Leads to Long-Lasting Changes in Innate and Innate-like Lymphocyte Populations. | 2017-07-01 | 10.4049/jimmunol.1601989 | 31 | view | |
| Lee | Trends Mol Med | De Novo Gene Expression Reconstruction in Space. | 2017-07-01 | 10.1016/j.molmed.2017.05.004 | 5 | view | |
| Lun | Biostatistics | Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data. | 2017-07-01 | 10.1093/biostatistics/kxw055 | 22 | view | |
| Farmer | Development | Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland. | 2017-07-01 | 10.1242/dev.150789 | 20 | view | |
| Doud | FEMS Microbiol. Rev. | Novel approaches in function-driven single-cell genomics. | 2017-07-01 | 10.1093/femsre/fux009 | 10 | view | |
| Krasnitz | Trends Mol Med | Early Detection of Cancer in Blood Using Single-Cell Analysis: A Proposal. | 2017-07-01 | 10.1016/j.molmed.2017.05.005 | view | ||
| Zhang | Arch. Toxicol. | Precision toxicology based on single cell sequencing: an evolving trend in toxicological evaluations and mechanism exploration. | 2017-07-01 | 10.1007/s00204-017-1971-4 | 12 | view | |
| Santoferrara | Mol. Phylogenet. Evol. | Phylogeny, classification and diversity of Choreotrichia and Oligotrichia (Ciliophora, Spirotrichea). | 2017-07-01 | 10.1016/j.ympev.2017.03.010 | 22 | view | |
| Krabberød | Mol. Biol. Evol. | Single Cell Transcriptomics, Mega-Phylogeny, and the Genetic Basis of Morphological Innovations in Rhizaria. | 2017-07-01 | 10.1093/molbev/msx075 | 21 | view | |
| Nirschl | Cell | IFNγ-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment. | 2017-06-29 | 10.1016/j.cell.2017.06.016 | 36 | view | |
| Huang | Genome Biol. | BRIE: transcriptome-wide splicing quantification in single cells. | 2017-06-27 | 10.1186/s13059-017-1248-5 | 37 | view | |
| Kar | Nat Commun | Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression. | 2017-06-26 | 10.1038/s41467-017-00052-2 | 35 | view | |
| Camp | Nature | Multilineage communication regulates human liver bud development from pluripotency. | 2017-06-22 | 10.1038/nature22796 | 180 | view | |
| Wang | J Genet Genomics | Differential gene network analysis from single cell RNA-seq. | 2017-06-20 | 10.1016/j.jgg.2017.03.001 | 3 | view | |
| Liu | Nat Commun | Reconstructing cell cycle pseudo time-series via single-cell transcriptome data. | 2017-06-19 | 10.1038/s41467-017-00039-z | 35 | view | |
| Antolović | Curr. Biol. | Generation of Single-Cell Transcript Variability by Repression. | 2017-06-19 | 10.1016/j.cub.2017.05.028 | 16 | view | |
| Li | Sci Rep | Dosage compensation in the process of inactivation/reactivation during both germ cell development and early embryogenesis in mouse. | 2017-06-16 | 10.1038/s41598-017-03829-z | 6 | view | |
| Zheng | Cell | Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing. | 2017-06-15 | 10.1016/j.cell.2017.05.035 | 140 | view | |
| Wu | Annu Rev Anal Chem (Palo Alto Calif) | Single-Cell Transcriptional Analysis. | 2017-06-12 | 10.1146/annurev-anchem-061516-045228 | 46 | view | |
| Wen | J. Biol. Chem. | Single-cell analysis reveals lineage segregation in early post-implantation mouse embryos. | 2017-06-09 | 10.1074/jbc.M117.780585 | 16 | view | |
| Kang | Dev. Cell | Lineage Establishment and Progression within the Inner Cell Mass of the Mouse Blastocyst Requires FGFR1 and FGFR2. | 2017-06-05 | 10.1016/j.devcel.2017.05.003 | 63 | view | |
| Bacher | Nat. Methods | SCnorm: robust normalization of single-cell RNA-seq data. | 2017-06-01 | 10.1038/nmeth.4263 | 94 | view | |
| Giustacchini | Nat. Med. | Single-cell transcriptomics uncovers distinct molecular signatures of stem cells in chronic myeloid leukemia. | 2017-06-01 | 10.1038/nm.4336 | 139 | view | |
| Ofengeim | Trends Mol Med | Single-Cell RNA Sequencing: Unraveling the Brain One Cell at a Time. | 2017-06-01 | 10.1016/j.molmed.2017.04.006 | 45 | view | |
| Teng | Neuro-oncology | Dissecting inherent intratumor heterogeneity in patient-derived glioblastoma culture models. | 2017-06-01 | 10.1093/neuonc/now253 | 20 | view | |
| Fletcher | Cell Stem Cell | Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution. | 2017-06-01 | 10.1016/j.stem.2017.04.003 | 87 | view | |
| Rizvi | Nat. Biotechnol. | Single-cell topological RNA-seq analysis reveals insights into cellular differentiation and development. | 2017-06-01 | 10.1038/nbt.3854 | 123 | view | |
| Hawkins | J. Clin. Invest. | Prospective isolation of NKX2-1-expressing human lung progenitors derived from pluripotent stem cells. | 2017-06-01 | 10.1172/JCI89950 | 55 | view | |
| Vallejos | Nat. Methods | Normalizing single-cell RNA sequencing data: challenges and opportunities. | 2017-06-01 | 10.1038/nmeth.4292 | 87 | view | |
| Teschendorff | Nat Commun | Single-cell entropy for accurate estimation of differentiation potency from a cell's transcriptome. | 2017-06-01 | 10.1038/ncomms15599 | view | ||
| Wu | PLoS Comput. Biol. | Independent regulation of gene expression level and noise by histone modifications. | 2017-06-01 | 10.1371/journal.pcbi.1005585 | 10 | view | |
| Picardi | RNA | Single-cell transcriptomics reveals specific RNA editing signatures in the human brain. | 2017-06-01 | 10.1261/rna.058271.116 | 31 | view | |
| Sanders | Nat Protoc | Single-cell template strand sequencing by Strand-seq enables the characterization of individual homologs. | 2017-06-01 | 10.1038/nprot.2017.029 | 10 | view | |
| Luo | Harmful Algae | Adding new pieces to the Azadinium (Dinophyceae) diversity and biogeography puzzle: Non-toxigenic Azadinium zhuanum sp. nov. from China, toxigenic A. poporum from the Mediterranean, and a non-toxigenic A. dalianense from the French Atlantic. | 2017-06-01 | 10.1016/j.hal.2017.05.001 | 20 | view | |
| Li | Cell Stem Cell | Single-Cell RNA-Seq Analysis Maps Development of Human Germline Cells and Gonadal Niche Interactions. | 2017-06-01 | 10.1016/j.stem.2017.03.007 | 138 | view | |
| Schiffman | Stat Biosci | SIDEseq: A Cell Similarity Measure Defined by Shared Identified Differentially Expressed Genes for Single-Cell RNA sequencing Data. | 2017-06-01 | 10.1007/s12561-017-9194-z | view | ||
| Qi | J. Neurosci. | Hierarchical Specification of Pruriceptors by Runt-Domain Transcription Factor Runx1. | 2017-05-31 | 10.1523/JNEUROSCI.0094-17.2017 | 11 | view | |
| Batiuk | J. Biol. Chem. | An immunoaffinity-based method for isolating ultrapure adult astrocytes based on ATP1B2 targeting by the ACSA-2 antibody. | 2017-05-26 | 10.1074/jbc.M116.765313 | 9 | view | |
| Chung | Nature | Identification of preoptic sleep neurons using retrograde labelling and gene profiling. | 2017-05-25 | 10.1038/nature22350 | 76 | view | |
| Wang | BMC Bioinformatics | DTWscore: differential expression and cell clustering analysis for time-series single-cell RNA-seq data. | 2017-05-23 | 10.1186/s12859-017-1647-3 | 2 | view | |
| Kirschner | Cell Rep | Proliferation Drives Aging-Related Functional Decline in a Subpopulation of the Hematopoietic Stem Cell Compartment. | 2017-05-23 | 10.1016/j.celrep.2017.04.074 | 18 | view | |
| Laboissonniere | J Vis Exp | Single-cell RNA-Seq of Defined Subsets of Retinal Ganglion Cells. | 2017-05-22 | 10.3791/55229 | 3 | view | |
| Alles | BMC Biol. | Cell fixation and preservation for droplet-based single-cell transcriptomics. | 2017-05-19 | 10.1186/s12915-017-0383-5 | 93 | view | |
| Lasrado | Science | Lineage-dependent spatial and functional organization of the mammalian enteric nervous system. | 2017-05-19 | 10.1126/science.aam7511 | 44 | view | |
| Cabezas-Wallscheid | Cell | Vitamin A-Retinoic Acid Signaling Regulates Hematopoietic Stem Cell Dormancy. | 2017-05-18 | 10.1016/j.cell.2017.04.018 | 138 | view | |
| Mildner | Immunity | Genomic Characterization of Murine Monocytes Reveals C/EBPβ Transcription Factor Dependence of Ly6C- Cells. | 2017-05-16 | 10.1016/j.immuni.2017.04.018 | 108 | view | |
| Dai | Proc. Natl. Acad. Sci. U.S.A. | Conditional knockin of Dnmt3a R878H initiates acute myeloid leukemia with mTOR pathway involvement. | 2017-05-16 | 10.1073/pnas.1703476114 | 15 | view | |
| Blasi | Phys Biol | cgCorrect: a method to correct for confounding cell-cell variation due to cell growth in single-cell transcriptomics. | 2017-05-11 | 10.1088/1478-3975/aa609a | 1 | view | |
| Karlsson | Mol. Syst. Biol. | Alternative TSSs are co-regulated in single cells in the mouse brain. | 2017-05-11 | 10.15252/msb.20167374 | 4 | view | |
| Gouti | Dev. Cell | A Gene Regulatory Network Balances Neural and Mesoderm Specification during Vertebrate Trunk Development. | 2017-05-08 | 10.1016/j.devcel.2017.04.002 | 72 | view | |
| Chung | Nat Commun | Single-cell RNA-seq enables comprehensive tumour and immune cell profiling in primary breast cancer. | 2017-05-05 | 10.1038/ncomms15081 | 230 | view | |
| Picelli | RNA Biol | Single-cell RNA-sequencing: The future of genome biology is now. | 2017-05-04 | 10.1080/15476286.2016.1201618 | 76 | view | |
| Der | JCI Insight | Single cell RNA sequencing to dissect the molecular heterogeneity in lupus nephritis. | 2017-05-04 | 10.1172/jci.insight.93009 | 28 | view | |
| Pruitt | J Vis Exp | Isolation of the Side Population in Myc-induced T-cell Acute Lymphoblastic Leukemia in Zebrafish. | 2017-05-04 | 10.3791/55711 | 2 | view | |
| Zeng | Cell Metab. | Pseudotemporal Ordering of Single Cells Reveals Metabolic Control of Postnatal β Cell Proliferation. | 2017-05-02 | 10.1016/j.cmet.2017.04.014 | 22 | view | |
| Liu | ISME J | Single-cell transcriptomics of small microbial eukaryotes: limitations and potential. | 2017-05-01 | 10.1038/ismej.2016.190 | 7 | view | |
| Ner-Gaon | J. Immunol. | JingleBells: A Repository of Immune-Related Single-Cell RNA-Sequencing Datasets. | 2017-05-01 | 10.4049/jimmunol.1700272 | 11 | view | |
| Kiselev | Nat. Methods | SC3: consensus clustering of single-cell RNA-seq data. | 2017-05-01 | 10.1038/nmeth.4236 | 481 | view | |
| Lam | Mol Metab | Heterogeneity of hypothalamic pro-opiomelanocortin-expressing neurons revealed by single-cell RNA sequencing. | 2017-05-01 | 10.1016/j.molmet.2017.02.007 | 27 | view | |
| Li | Nat. Genet. | Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors. | 2017-05-01 | 10.1038/ng.3818 | 271 | view | |
| Camp | Development | Human organomics: a fresh approach to understanding human development using single-cell transcriptomics. | 2017-05-01 | 10.1242/dev.150458 | 8 | view | |
| Jiang | Genome Biol. | SCALE: modeling allele-specific gene expression by single-cell RNA sequencing. | 2017-04-26 | 10.1186/s13059-017-1200-8 | 31 | view | |
| Lane | Cell Syst | Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB Activation. | 2017-04-26 | 10.1016/j.cels.2017.03.010 | 49 | view | |
| Villani | Science | Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors. | 2017-04-21 | 10.1126/science.aah4573 | 526 | view | |
| Guo | Nucleic Acids Res. | SLICE: determining cell differentiation and lineage based on single cell entropy. | 2017-04-20 | 10.1093/nar/gkw1278 | 43 | view | |
| Yang | Cell | Epithelial-Mesenchymal Micro-niches Govern Stem Cell Lineage Choices. | 2017-04-20 | 10.1016/j.cell.2017.03.038 | 91 | view | |
| Arguel | Nucleic Acids Res. | A cost effective 5΄ selective single cell transcriptome profiling approach with improved UMI design. | 2017-04-20 | 10.1093/nar/gkw1242 | 17 | view | |
| van Arensbergen | Mol. Cell | Functional Enhancer Screening in Single Cells. | 2017-04-20 | 10.1016/j.molcel.2017.03.018 | view | ||
| Campbell | Bioinformatics | switchde: inference of switch-like differential expression along single-cell trajectories. | 2017-04-15 | 10.1093/bioinformatics/btw798 | 16 | view | |
| McCarthy | Bioinformatics | Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R. | 2017-04-15 | 10.1093/bioinformatics/btw777 | 125 | view | |
| Bershteyn | Cell Stem Cell | Human iPSC-Derived Cerebral Organoids Model Cellular Features of Lissencephaly and Reveal Prolonged Mitosis of Outer Radial Glia. | 2017-04-06 | 10.1016/j.stem.2016.12.007 | 98 | view | |
| Hu | Autophagy | Single-cell RNA sequencing highlights transcription activity of autophagy-related genes during hematopoietic stem cell formation in mouse embryos. | 2017-04-03 | 10.1080/15548627.2016.1278093 | 8 | view | |
| Kakaradov | Nat. Immunol. | Early transcriptional and epigenetic regulation of CD8+ T cell differentiation revealed by single-cell RNA sequencing. | 2017-04-01 | 10.1038/ni.3688 | 24 | view | |
| Yu | Cancer Res. | Modeling the Genetic Regulation of Cancer Metabolism: Interplay between Glycolysis and Oxidative Phosphorylation. | 2017-04-01 | 10.1158/0008-5472.CAN-16-2074 | 90 | view | |
| Svensson | Nat. Methods | Power analysis of single-cell RNA-sequencing experiments. | 2017-04-01 | 10.1038/nmeth.4220 | 255 | view | |
| Gierahn | Nat. Methods | Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput. | 2017-04-01 | 10.1038/nmeth.4179 | 124 | view | |
| Wang | Nat. Methods | Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning. | 2017-04-01 | 10.1038/nmeth.4207 | 233 | view | |
| Qian | Semin. Cell Dev. Biol. | Detection of single cell heterogeneity in cancer. | 2017-04-01 | 10.1016/j.semcdb.2016.09.003 | 35 | view | |
| Woodworth | Nat. Rev. Genet. | Building a lineage from single cells: genetic techniques for cell lineage tracking. | 2017-04-01 | 10.1038/nrg.2016.159 | 119 | view | |
| Kuipers | Biochim. Biophys. Acta | Advances in understanding tumour evolution through single-cell sequencing. | 2017-04-01 | 10.1016/j.bbcan.2017.02.001 | 36 | view | |
| Li | Curr Pharmacol Rep | Single-Cell Transcriptome Analysis of Neural Stem Cells. | 2017-04-01 | 10.1007/s40495-017-0084-3 | view | ||
| Chen | Sci Rep | Single-cell RNA sequencing identifies distinct mouse medial ganglionic eminence cell types. | 2017-03-31 | 10.1038/srep45656 | 20 | view | |
| Venteicher | Science | Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq. | 2017-03-31 | 10.1126/science.aai8478 | 191 | view | |
| Martinez-Jimenez | Science | Aging increases cell-to-cell transcriptional variability upon immune stimulation. | 2017-03-31 | 10.1126/science.aah4115 | 85 | view | |
| Chen | Cell Rep | Single-Cell RNA-Seq Reveals Hypothalamic Cell Diversity. | 2017-03-28 | 10.1016/j.celrep.2017.03.004 | 168 | view | |
| Lin | Genome Biol. | CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data. | 2017-03-28 | 10.1186/s13059-017-1188-0 | 119 | view | |
| Vieira Braga | Genome Biol. | Are cells from a snowman realistic? Cryopreserved tissues as a source for single-cell RNA-sequencing experiments. | 2017-03-24 | 10.1186/s13059-017-1192-4 | view | ||
| Furchtgott | Elife | Discovering sparse transcription factor codes for cell states and state transitions during development. | 2017-03-15 | 10.7554/eLife.20488 | 15 | view | |
| Campbell | Wellcome Open Res | Probabilistic modeling of bifurcations in single-cell gene expression data using a Bayesian mixture of factor analyzers. | 2017-03-15 | 10.12688/wellcomeopenres.11087.1 | 8 | view | |
| Jang | Elife | Dynamics of embryonic stem cell differentiation inferred from single-cell transcriptomics show a series of transitions through discrete cell states. | 2017-03-15 | 10.7554/eLife.20487 | 26 | view | |
| Wurtzel | Dev. Cell | Planarian Epidermal Stem Cells Respond to Positional Cues to Promote Cell-Type Diversity. | 2017-03-13 | 10.1016/j.devcel.2017.02.008 | 36 | view | |
| Close | Neuron | Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation. | 2017-03-08 | 10.1016/j.neuron.2017.02.014 | 31 | view | |
| Chakravarthy | Cell Metab. | Converting Adult Pancreatic Islet α Cells into β Cells by Targeting Both Dnmt1 and Arx. | 2017-03-07 | 10.1016/j.cmet.2017.01.009 | 68 | view | |
| Tang | Proc. Natl. Acad. Sci. U.S.A. | High-throughput screening of rare metabolically active tumor cells in pleural effusion and peripheral blood of lung cancer patients. | 2017-03-07 | 10.1073/pnas.1612229114 | 26 | view | |
| Lönnberg | Sci Immunol | Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria. | 2017-03-03 | 10.1126/sciimmunol.aal2192 | 137 | view | |
| Bifari | Cell Stem Cell | Neurogenic Radial Glia-like Cells in Meninges Migrate and Differentiate into Functionally Integrated Neurons in the Neonatal Cortex. | 2017-03-02 | 10.1016/j.stem.2016.10.020 | 35 | view | |
| Santoni | Am. J. Hum. Genet. | Detection of Imprinted Genes by Single-Cell Allele-Specific Gene Expression. | 2017-03-02 | 10.1016/j.ajhg.2017.01.028 | 33 | view | |
| Gao | Cereb. Cortex | Integrative Single-Cell Transcriptomics Reveals Molecular Networks Defining Neuronal Maturation During Postnatal Neurogenesis. | 2017-03-01 | 10.1093/cercor/bhw040 | 22 | view | |
| Carmona | Genome Res. | Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types. | 2017-03-01 | 10.1101/gr.207704.116 | 37 | view | |
| Smith | Genome Res. | UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy. | 2017-03-01 | 10.1101/gr.209601.116 | 231 | view | |
| Specht | Bioinformatics | LEAP: constructing gene co-expression networks for single-cell RNA-sequencing data using pseudotime ordering. | 2017-03-01 | 10.1093/bioinformatics/btw729 | 22 | view | |
| Yang | Bioinformatics | Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud. | 2017-03-01 | 10.1093/bioinformatics/btw732 | 9 | view | |
| Datlinger | Nat. Methods | Pooled CRISPR screening with single-cell transcriptome readout. | 2017-03-01 | 10.1038/nmeth.4177 | 190 | view | |
| Chen | Nat Protoc | Spatial transcriptomic analysis of cryosectioned tissue samples with Geo-seq. | 2017-03-01 | 10.1038/nprot.2017.003 | 61 | view | |
| Borensztein | Nat. Struct. Mol. Biol. | Xist-dependent imprinted X inactivation and the early developmental consequences of its failure. | 2017-03-01 | 10.1038/nsmb.3365 | 64 | view | |
| Sheng | Nat. Methods | Effective detection of variation in single-cell transcriptomes using MATQ-seq. | 2017-03-01 | 10.1038/nmeth.4145 | 58 | view | |
| Qiu | Nat. Methods | Single-cell mRNA quantification and differential analysis with Census. | 2017-03-01 | 10.1038/nmeth.4150 | 345 | view | |
| Perraudeau | F1000Res | Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference. | 2017-03-01 | 10.12688/f1000research.12122.1 | 10 | view | |
| Wang | Biotechnol. Lett. | Single-cell RNA-seq reveals lincRNA expression differences in Hela-S3 cells. | 2017-03-01 | 10.1007/s10529-016-2260-7 | 5 | view | |
| Lee | Wiley Interdiscip Rev Syst Biol Med | Quantitative approaches for investigating the spatial context of gene expression. | 2017-03-01 | 10.1002/wsbm.1369 | 27 | view | |
| Romanov | J. Endocrinol. | Molecular diversity of corticotropin-releasing hormone mRNA-containing neurons in the hypothalamus. | 2017-03-01 | 10.1530/JOE-16-0256 | 16 | view | |
| Yan | Oncol Lett | Single-cell genomic profiling of acute myeloid leukemia for clinical use: A pilot study. | 2017-03-01 | 10.3892/ol.2017.5669 | 8 | view | |
| Winterhoff | Gynecol. Oncol. | Single cell sequencing reveals heterogeneity within ovarian cancer epithelium and cancer associated stromal cells. | 2017-03-01 | 10.1016/j.ygyno.2017.01.015 | 32 | view | |
| Pavličev | Genome Res. | Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface. | 2017-03-01 | 10.1101/gr.207597.116 | 27 | view | |
| Guillaumet-Adkins | Genome Biol. | Single-cell transcriptome conservation in cryopreserved cells and tissues. | 2017-03-01 | 10.1186/s13059-017-1171-9 | 61 | view | |
| Salehi | Genome Biol. | ddClone: joint statistical inference of clonal populations from single cell and bulk tumour sequencing data. | 2017-03-01 | 10.1186/s13059-017-1169-3 | 34 | view | |
| Zhu | Cell. Mol. Life Sci. | Next-generation molecular diagnosis: single-cell sequencing from bench to bedside. | 2017-03-01 | 10.1007/s00018-016-2368-x | 11 | view | |
| Martelotto | Nat. Med. | Whole-genome single-cell copy number profiling from formalin-fixed paraffin-embedded samples. | 2017-03-01 | 10.1038/nm.4279 | 53 | view | |
| Kunz | Cancer Metastasis Rev. | The impact of melanoma genetics on treatment response and resistance in clinical and experimental studies. | 2017-03-01 | 10.1007/s10555-017-9657-1 | 18 | view | |
| Posfai | Elife | Position- and Hippo signaling-dependent plasticity during lineage segregation in the early mouse embryo. | 2017-02-22 | 10.7554/eLife.22906 | 62 | view | |
| Yang | Nucleic Acids Res. | Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors. | 2017-02-17 | 10.1093/nar/gkw1214 | 20 | view | |
| Knouse | J Vis Exp | Detection of Copy Number Alterations Using Single Cell Sequencing. | 2017-02-17 | 10.3791/55143 | 4 | view | |
| Ziegenhain | Mol. Cell | Comparative Analysis of Single-Cell RNA Sequencing Methods. | 2017-02-16 | 10.1016/j.molcel.2017.01.023 | 176 | view | |
| Henley | J Vis Exp | Reliable Identification of Living Dopaminergic Neurons in Midbrain Cultures Using RNA Sequencing and TH-promoter-driven eGFP Expression. | 2017-02-10 | 10.3791/54981 | view | ||
| Gong | Nat Commun | Dpath software reveals hierarchical haemato-endothelial lineages of Etv2 progenitors based on single-cell transcriptome analysis. | 2017-02-09 | 10.1038/ncomms14362 | 18 | view | |
| Zheng | Nat Commun | Expression of β-globin by cancer cells promotes cell survival during blood-borne dissemination. | 2017-02-09 | 10.1038/ncomms14344 | 22 | view | |
| Wang | Brief. Bioinformatics | DNA copy number profiling using single-cell sequencing. | 2017-02-04 | 10.1093/bib/bbx004 | 16 | view | |
| Johnson | Curr. Opin. Neurobiol. | Cerebral cortical neuron diversity and development at single-cell resolution. | 2017-02-01 | 10.1016/j.conb.2016.11.001 | 22 | view | |
| Saliba | Curr. Opin. Microbiol. | New RNA-seq approaches for the study of bacterial pathogens. | 2017-02-01 | 10.1016/j.mib.2017.01.001 | 58 | view | |
| Stanescu | Physiol. Genomics | Single cell transcriptomic profiling of mouse pancreatic progenitors. | 2017-02-01 | 10.1152/physiolgenomics.00114.2016 | 9 | view | |
| Neu | Trends Immunol. | Single-Cell Genomics: Approaches and Utility in Immunology. | 2017-02-01 | 10.1016/j.it.2016.12.001 | 14 | view | |
| Romanov | Nat. Neurosci. | Molecular interrogation of hypothalamic organization reveals distinct dopamine neuronal subtypes. | 2017-02-01 | 10.1038/nn.4462 | 156 | view | |
| Canzar | Bioinformatics | BASIC: BCR assembly from single cells. | 2017-02-01 | 10.1093/bioinformatics/btw631 | 44 | view | |
| Macaulay | Trends Genet. | Single-Cell Multiomics: Multiple Measurements from Single Cells. | 2017-02-01 | 10.1016/j.tig.2016.12.003 | 103 | view | |
| Tsoucas | Curr. Opin. Genet. Dev. | Recent progress in single-cell cancer genomics. | 2017-02-01 | 10.1016/j.gde.2017.01.002 | 34 | view | |
| Frazer | Nat Commun | Transcriptomic and anatomic parcellation of 5-HT3AR expressing cortical interneuron subtypes revealed by single-cell RNA sequencing. | 2017-01-30 | 10.1038/ncomms14219 | view | ||
| Ji | Nat Commun | MetaSort untangles metagenome assembly by reducing microbial community complexity. | 2017-01-23 | 10.1038/ncomms14306 | 35 | view | |
| Zhang | Sci Rep | Development of a facile droplet-based single-cell isolation platform for cultivation and genomic analysis in microorganisms. | 2017-01-23 | 10.1038/srep41192 | 38 | view | |
| Gambardella | Nat Commun | The impact of microRNAs on transcriptional heterogeneity and gene co-expression across single embryonic stem cells. | 2017-01-19 | 10.1038/ncomms14126 | 20 | view | |
| Hsueh | Elife | Nematophagous fungus Arthrobotrys oligospora mimics olfactory cues of sex and food to lure its nematode prey. | 2017-01-18 | 10.7554/eLife.20023 | 15 | view | |
| Sasagawa | Genome Biol. | Erratum to: Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity. | 2017-01-18 | 10.1186/s13059-017-1154-x | 2 | view | |
| Dulken | Cell Rep | Single-Cell Transcriptomic Analysis Defines Heterogeneity and Transcriptional Dynamics in the Adult Neural Stem Cell Lineage. | 2017-01-17 | 10.1016/j.celrep.2016.12.060 | 125 | view | |
| Wang | BMC Genomics | Random X-chromosome inactivation dynamics in vivo by single-cell RNA sequencing. | 2017-01-17 | 10.1186/s12864-016-3466-8 | 7 | view | |
| Spaethling | Cell Rep | Primary Cell Culture of Live Neurosurgically Resected Aged Adult Human Brain Cells and Single Cell Transcriptomics. | 2017-01-17 | 10.1016/j.celrep.2016.12.066 | 26 | view | |
| Zhu | Acc. Chem. Res. | Hydrogel Droplet Microfluidics for High-Throughput Single Molecule/Cell Analysis. | 2017-01-17 | 10.1021/acs.accounts.6b00370 | 66 | view | |
| Shao | Bioinformatics | Robust classification of single-cell transcriptome data by nonnegative matrix factorization. | 2017-01-15 | 10.1093/bioinformatics/btw607 | 15 | view | |
| Cho | Cell Rep | Neonatal Transplantation Confers Maturation of PSC-Derived Cardiomyocytes Conducive to Modeling Cardiomyopathy. | 2017-01-10 | 10.1016/j.celrep.2016.12.040 | 31 | view | |
| Wills | BMC Genomics | The nature and nurture of cell heterogeneity: accounting for macrophage gene-environment interactions with single-cell RNA-Seq. | 2017-01-07 | 10.1186/s12864-016-3445-0 | 15 | view | |
| Guthals | J. Proteome Res. | De Novo MS/MS Sequencing of Native Human Antibodies. | 2017-01-06 | 10.1021/acs.jproteome.6b00608 | 13 | view | |
| Vallot | Cell Stem Cell | XACT Noncoding RNA Competes with XIST in the Control of X Chromosome Activity during Human Early Development. | 2017-01-05 | 10.1016/j.stem.2016.10.014 | 93 | view | |
| Yao | Cell Stem Cell | A Single-Cell Roadmap of Lineage Bifurcation in Human ESC Models of Embryonic Brain Development. | 2017-01-05 | 10.1016/j.stem.2016.09.011 | 50 | view | |
| Kee | Cell Stem Cell | Single-Cell Analysis Reveals a Close Relationship between Differentiating Dopamine and Subthalamic Nucleus Neuronal Lineages. | 2017-01-05 | 10.1016/j.stem.2016.10.003 | 50 | view | |
| Gerber | Oncotarget | Mapping heterogeneity in patient-derived melanoma cultures by single-cell RNA-seq. | 2017-01-03 | 10.18632/oncotarget.13666 | 37 | view | |
| Tung | Sci Rep | Batch effects and the effective design of single-cell gene expression studies. | 2017-01-03 | 10.1038/srep39921 | 91 | view | |
| Kumar | Development | Understanding development and stem cells using single cell-based analyses of gene expression. | 2017-01-01 | 10.1242/dev.133058 | 35 | view | |
| Cloney | Nat. Rev. Genet. | Cancer genomics: Single-cell RNA-seq to decipher tumour architecture. | 2017-01-01 | 10.1038/nrg.2016.151 | 8 | view | |
| Zilionis | Nat Protoc | Single-cell barcoding and sequencing using droplet microfluidics. | 2017-01-01 | 10.1038/nprot.2016.154 | 257 | view | |
| Wu | J. Exp. Med. | Intrinsic transcriptional heterogeneity in B cells controls early class switching to IgE. | 2017-01-01 | 10.1084/jem.20161056 | 12 | view | |
| Casasent | J. Pathol. | Genome evolution in ductal carcinoma in situ: invasion of the clones. | 2017-01-01 | 10.1002/path.4840 | 42 | view | |
| Lee | PLoS Comput. Biol. | Identifying T Cell Receptors from High-Throughput Sequencing: Dealing with Promiscuity in TCRα and TCRβ Pairing. | 2017-01-01 | 10.1371/journal.pcbi.1005313 | 21 | view | |
| Yang | Eur. Urol. | Single-cell Sequencing Reveals Variants in ARID1A, GPRC5A and MLL2 Driving Self-renewal of Human Bladder Cancer Stem Cells. | 2017-01-01 | 10.1016/j.eururo.2016.06.025 | 63 | view | |
| Wu | Eur. Urol. | Attention to Detail by Single-cell Sequencing. | 2017-01-01 | 10.1016/j.eururo.2016.09.005 | 2 | view | |
| Yang | Eur. Urol. | Reply from Authors re: Xue-Ru Wu. Attention to Detail by Single-cell sequencing. Eur Urol 2017;71:13-4. | 2017-01-01 | 10.1016/j.eururo.2016.11.003 | 2 | view | |
| Hu | BMC Genomics | A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data. | 2016-12-22 | 10.1186/s12864-016-3317-7 | 11 | view | |
| Liu | Sci Rep | Single-cell analysis of differences in transcriptomic profiles of oocytes and cumulus cells at GV, MI, MII stages from PCOS patients. | 2016-12-22 | 10.1038/srep39638 | 23 | view | |
| Lux | BMC Bioinformatics | acdc - Automated Contamination Detection and Confidence estimation for single-cell genome data. | 2016-12-20 | 10.1186/s12859-016-1397-7 | 10 | view | |
| Zhao | Nat Commun | Evolution of multiple cell clones over a 29-year period of a CLL patient. | 2016-12-16 | 10.1038/ncomms13765 | 18 | view | |
| Dixit | Cell | Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens. | 2016-12-15 | 10.1016/j.cell.2016.11.038 | 228 | view | |
| Adamson | Cell | A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response. | 2016-12-15 | 10.1016/j.cell.2016.11.048 | 363 | view | |
| Jaitin | Cell | Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq. | 2016-12-15 | 10.1016/j.cell.2016.11.039 | 245 | view | |
| Xu | JCI Insight | Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis. | 2016-12-08 | 10.1172/jci.insight.90558 | 178 | view | |
| Ghazanfar | BMC Syst Biol | Integrated single cell data analysis reveals cell specific networks and novel coactivation markers. | 2016-12-05 | 10.1186/s12918-016-0370-4 | 17 | view | |
| Zeng | Nucleic Acids Res. | Single-nucleus RNA-seq of differentiating human myoblasts reveals the extent of fate heterogeneity. | 2016-12-01 | 15 | view | ||
| Klimovskaia | PLoS Comput. Biol. | Sparse Regression Based Structure Learning of Stochastic Reaction Networks from Single Cell Snapshot Time Series. | 2016-12-01 | 10.1371/journal.pcbi.1005234 | 9 | view | |
| Fontana | PLoS Pathog. | Macrophage Colony Stimulating Factor Derived from CD4+ T Cells Contributes to Control of a Blood-Borne Infection. | 2016-12-01 | 10.1371/journal.ppat.1006046 | view | ||
| Erwin | Nat. Neurosci. | L1-associated genomic regions are deleted in somatic cells of the healthy human brain. | 2016-12-01 | 10.1038/nn.4388 | 105 | view | |
| Hart | Int. J. Dev. Neurosci. | Long noncoding RNAs: Central to nervous system development. | 2016-12-01 | 10.1016/j.ijdevneu.2016.06.001 | 19 | view | |
| Bian | Trends Biotechnol. | Computational Tools for Stem Cell Biology. | 2016-12-01 | 10.1016/j.tibtech.2016.05.010 | 33 | view | |
| Faridani | Nat. Biotechnol. | Single-cell sequencing of the small-RNA transcriptome. | 2016-12-01 | 10.1038/nbt.3701 | 58 | view | |
| Müller | Mol. Syst. Biol. | Single-cell sequencing maps gene expression to mutational phylogenies in PDGF- and EGF-driven gliomas. | 2016-11-25 | 10.15252/msb.20166969 | 54 | view | |
| Park | Sci Rep | Measuring intratumor heterogeneity by network entropy using RNA-seq data. | 2016-11-24 | 10.1038/srep37767 | 11 | view | |
| McConnell | Cell Rep | p53 Regulates Progenitor Cell Quiescence and Differentiation in the Airway. | 2016-11-22 | 10.1016/j.celrep.2016.11.007 | 13 | view | |
| DeLaughter | Dev. Cell | Single-Cell Resolution of Temporal Gene Expression during Heart Development. | 2016-11-21 | 10.1016/j.devcel.2016.10.001 | 163 | view | |
| Saliba | Nat Microbiol | Single-cell RNA-seq ties macrophage polarization to growth rate of intracellular Salmonella. | 2016-11-14 | 10.1038/nmicrobiol.2016.206 | 72 | view | |
| Butcher | Circ. Res. | Atherosclerosis-Driven Treg Plasticity Results in Formation of a Dysfunctional Subset of Plastic IFNγ+ Th1/Tregs. | 2016-11-11 | 10.1161/CIRCRESAHA.116.309764 | 24 | view | |
| Tirosh | Nature | Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma. | 2016-11-10 | 10.1038/nature20123 | 358 | view | |
| Wagner | Nat. Biotechnol. | Revealing the vectors of cellular identity with single-cell genomics. | 2016-11-08 | 10.1038/nbt.3711 | 248 | view | |
| Yu | Nature | Single-cell RNA-seq identifies a PD-1hi ILC progenitor and defines its development pathway. | 2016-11-03 | 10.1038/nature20105 | view | ||
| Ohta | Sci Rep | Laminin-guided highly efficient endothelial commitment from human pluripotent stem cells. | 2016-11-02 | 10.1038/srep35680 | 14 | view | |
| Reinius | Nat. Genet. | Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq. | 2016-11-01 | 10.1038/ng.3678 | 54 | view | |
| Perié | FEBS Lett. | Retracing the in vivo haematopoietic tree using single-cell methods. | 2016-11-01 | 10.1002/1873-3468.12299 | 13 | view | |
| Bardy | Mol. Psychiatry | Predicting the functional states of human iPSC-derived neurons with single-cell RNA-seq and electrophysiology. | 2016-11-01 | 10.1038/mp.2016.158 | 57 | view | |
| Sanchez-Delgado | PLoS Genet. | Human Oocyte-Derived Methylation Differences Persist in the Placenta Revealing Widespread Transient Imprinting. | 2016-11-01 | 10.1371/journal.pgen.1006427 | 43 | view | |
| Cannoodt | Eur. J. Immunol. | Computational methods for trajectory inference from single-cell transcriptomics. | 2016-11-01 | 10.1002/eji.201646347 | 79 | view | |
| Moris | Nat. Rev. Genet. | Transition states and cell fate decisions in epigenetic landscapes. | 2016-11-01 | 10.1038/nrg.2016.98 | 141 | view | |
| Baron | Cell Syst | A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure. | 2016-10-26 | 10.1016/j.cels.2016.08.011 | 353 | view | |
| Vickovic | Nat Commun | Massive and parallel expression profiling using microarrayed single-cell sequencing. | 2016-10-14 | 10.1038/ncomms13182 | 24 | view | |
| Xin | Cell Metab. | RNA Sequencing of Single Human Islet Cells Reveals Type 2 Diabetes Genes. | 2016-10-11 | 10.1016/j.cmet.2016.08.018 | 147 | view | |
| Prasad | Cell Metab. | Single-Cell Sequencing of Human Pancreatic Islets-New Kids on the Block. | 2016-10-11 | 10.1016/j.cmet.2016.09.012 | 3 | view | |
| Glinsky | Cancer Lett. | Single cell genomics reveals activation signatures of endogenous SCAR's networks in aneuploid human embryos and clinically intractable malignant tumors. | 2016-10-10 | 10.1016/j.canlet.2016.08.001 | view | ||
| La Manno | Cell | Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells. | 2016-10-06 | 10.1016/j.cell.2016.09.027 | view | ||
| Chen | Cell Stem Cell | Out of Many, One: Computational Reconstruction of Mouse Skin using Single-Cell Transcriptomics. | 2016-10-06 | 10.1016/j.stem.2016.09.009 | view | ||
| Zhang | Oncotarget | Single-cell analyses of transcriptional heterogeneity in squamous cell carcinoma of urinary bladder. | 2016-10-04 | 10.18632/oncotarget.11803 | 13 | view | |
| Wang | Diabetes | Single-Cell Transcriptomics of the Human Endocrine Pancreas. | 2016-10-01 | 10.2337/db16-0405 | 174 | view | |
| Edsgärd | Bioinformatics | scphaser: haplotype inference using single-cell RNA-seq data. | 2016-10-01 | 10.1093/bioinformatics/btw484 | 11 | view | |
| Zhao | Reprod. Domest. Anim. | Transcriptome analyses of inner cell mass and trophectoderm cells isolated by magnetic-activated cell sorting from bovine blastocysts using single cell RNA-seq. | 2016-10-01 | 10.1111/rda.12737 | 11 | view | |
| Kwan | Curr Pharmacol Rep | Single-Cell Transcriptome Analysis of Developing and Regenerating Spiral Ganglion Neurons. | 2016-10-01 | 10.1007/s40495-016-0064-z | 3 | view | |
| Welch | Nucleic Acids Res. | Selective single cell isolation for genomics using microraft arrays. | 2016-09-30 | 10.1093/nar/gkw700 | 12 | view | |
| Olsson | Nature | Single-cell analysis of mixed-lineage states leading to a binary cell fate choice. | 2016-09-29 | 10.1038/nature19348 | 218 | view | |
| Joost | Cell Syst | Single-Cell Transcriptomics Reveals that Differentiation and Spatial Signatures Shape Epidermal and Hair Follicle Heterogeneity. | 2016-09-28 | 10.1016/j.cels.2016.08.010 | 63 | view | |
| Chen | Sci Rep | Single-cell SNP analyses and interpretations based on RNA-Seq data for colon cancer research. | 2016-09-28 | 10.1038/srep34420 | 8 | view | |
| Song | Cell Rep | The Homeobox Transcription Factor RHOX10 Drives Mouse Spermatogonial Stem Cell Establishment. | 2016-09-27 | 10.1016/j.celrep.2016.08.090 | 23 | view | |
| Yuan | Sci Rep | An Automated Microwell Platform for Large-Scale Single Cell RNA-Seq. | 2016-09-27 | 10.1038/srep33883 | 55 | view | |
| Barron | Sci Rep | Identifying and removing the cell-cycle effect from single-cell RNA-Sequencing data. | 2016-09-27 | 10.1038/srep33892 | 39 | view | |
| Eckersley-Maslin | Cell Rep | MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs. | 2016-09-27 | 10.1016/j.celrep.2016.08.087 | 65 | view | |
| Moffitt | Proc. Natl. Acad. Sci. U.S.A. | High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization. | 2016-09-27 | 10.1073/pnas.1612826113 | 143 | view | |
| Nath | Curr. Biol. | C. elegans Stress-Induced Sleep Emerges from the Collective Action of Multiple Neuropeptides. | 2016-09-26 | 10.1016/j.cub.2016.07.048 | 57 | view | |
| Mora-Bermúdez | Elife | Differences and similarities between human and chimpanzee neural progenitors during cerebral cortex development. | 2016-09-26 | 10.7554/eLife.18683 | 36 | view | |
| Qiu | Oncotarget | Identification and functional analysis of long non-coding RNAs in human and mouse early embryos based on single-cell transcriptome data. | 2016-09-20 | 10.18632/oncotarget.11304 | 15 | view | |
| Zhang | BMC Bioinformatics | nbCNV: a multi-constrained optimization model for discovering copy number variants in single-cell sequencing data. | 2016-09-17 | 10.1186/s12859-016-1239-7 | 5 | view | |
| duVerle | BMC Bioinformatics | CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data. | 2016-09-13 | 10.1186/s12859-016-1175-6 | view | ||
| Onorati | Cell Rep | Zika Virus Disrupts Phospho-TBK1 Localization and Mitosis in Human Neuroepithelial Stem Cells and Radial Glia. | 2016-09-06 | 10.1016/j.celrep.2016.08.038 | 155 | view | |
| Xin | Endocrinology | Single-Cell RNAseq Reveals That Pancreatic β-Cells From Very Old Male Mice Have a Young Gene Signature. | 2016-09-01 | 10.1210/en.2016-1235 | 8 | view | |
| Liu | F1000Res | Single-cell transcriptome sequencing: recent advances and remaining challenges. | 2016-09-01 | 10.12688/f1000research.7223.1 | 142 | view | |
| Petropoulos | J. Intern. Med. | Single-cell RNA sequencing: revealing human pre-implantation development, pluripotency and germline development. | 2016-09-01 | 10.1111/joim.12493 | 5 | view | |
| Qian | Sci China Life Sci | Single-cell RNA-seq technology lends a hand into HSC ontogeny. | 2016-09-01 | 10.1007/s11427-016-5092-8 | view | ||
| Nakamura | Nature | A developmental coordinate of pluripotency among mice, monkeys and humans. | 2016-09-01 | 10.1038/nature19096 | 169 | view | |
| Xu | Nat. Methods | Virtual microfluidics for digital quantification and single-cell sequencing. | 2016-09-01 | 10.1038/nmeth.3955 | 26 | view | |
| Zhou | Cell Stem Cell | Advanced Technologies Lead iNto New Reprogramming Routes. | 2016-09-01 | 10.1016/j.stem.2016.08.014 | view | ||
| Mato Prado | Expert Rev. Mol. Diagn. | Single-cell sequencing in cancer research. | 2016-09-01 | 10.1586/14737159.2016.1115345 | view | ||
| Stumpf | Proteomics | Single-cell pluripotency regulatory networks. | 2016-09-01 | 10.1002/pmic.201500528 | 5 | view | |
| Földy | Proc. Natl. Acad. Sci. U.S.A. | Single-cell RNAseq reveals cell adhesion molecule profiles in electrophysiologically defined neurons. | 2016-08-30 | 10.1073/pnas.1610155113 | 81 | view | |
| Poulin | Nat. Neurosci. | Disentangling neural cell diversity using single-cell transcriptomics. | 2016-08-26 | 10.1038/nn.4366 | 181 | view | |
| Habib | Science | Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons. | 2016-08-26 | 10.1126/science.aad7038 | 134 | view | |
| Nestorowa | Blood | A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation. | 2016-08-25 | 10.1182/blood-2016-05-716480 | 104 | view | |
| Gury-BenAri | Cell | The Spectrum and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by the Microbiome. | 2016-08-25 | 10.1016/j.cell.2016.07.043 | 224 | view | |
| Hu | Sci Rep | Single-cell RNA-seq reveals distinct injury responses in different types of DRG sensory neurons. | 2016-08-25 | 10.1038/srep31851 | 32 | view | |
| Shekhar | Cell | Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics. | 2016-08-25 | 10.1016/j.cell.2016.07.054 | 233 | view | |
| DeTomaso | BMC Bioinformatics | FastProject: a tool for low-dimensional analysis of single-cell RNA-Seq data. | 2016-08-23 | 10.1186/s12859-016-1176-5 | 44 | view | |
| Chen | BMC Genomics | Detection of high variability in gene expression from single-cell RNA-seq profiling. | 2016-08-22 | 10.1186/s12864-016-2897-6 | 19 | view | |
| Chu | Genome Biol. | Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm. | 2016-08-17 | 10.1186/s13059-016-1033-x | 101 | view | |
| Jiang | Bioinformatics | Quality control of single-cell RNA-seq by SinQC. | 2016-08-15 | 10.1093/bioinformatics/btw176 | 21 | view | |
| Zhou | J. Physiol. (Lond.) | Single cell transcriptome analysis of mouse carotid body glomus cells. | 2016-08-01 | 10.1113/JP271936 | 47 | view | |
| Mantsoki | Comput Biol Chem | Gene expression variability in mammalian embryonic stem cells using single cell RNA-seq data. | 2016-08-01 | 10.1016/j.compbiolchem.2016.02.004 | 21 | view | |
| Wucherpfennig | Curr. Opin. Immunol. | Genetic screens to study the immune system in cancer. | 2016-08-01 | 10.1016/j.coi.2016.05.007 | 4 | view | |
| Venteicher | Neurosurgery | 142 Genetic and Nongenetic Determinants of Cellular Architecture in IDH1-Mutant Oligodendrogliomas and Astrocytomas Using Single-Cell Transcriptome Analysis. | 2016-08-01 | 10.1227/01.neu.0000489712.44702.0d | 4 | view | |
| Niemöller | Leuk. Res. | Single cell genotyping of exome sequencing-identified mutations to characterize the clonal composition and evolution of inv(16) AML in a CBL mutated clonal hematopoiesis. | 2016-08-01 | 10.1016/j.leukres.2016.05.008 | 5 | view | |
| Duscher | Gerontology | Stem Cells in Wound Healing: The Future of Regenerative Medicine? A Mini-Review. | 2016-08-01 | 10.1159/000381877 | 138 | view | |
| Xu | Comput Biol Chem | Copy number variants calling for single cell sequencing data by multi-constrained optimization. | 2016-08-01 | 10.1016/j.compbiolchem.2016.02.007 | 5 | view | |
| Ji | Nucleic Acids Res. | TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis. | 2016-07-27 | 10.1093/nar/gkw430 | 113 | view | |
| Redmond | Genome Med | Single-cell TCRseq: paired recovery of entire T-cell alpha and beta chain transcripts in T-cell receptors from single-cell RNAseq. | 2016-07-27 | 10.1186/s13073-016-0335-7 | 56 | view | |
| Gokce | Cell Rep | Cellular Taxonomy of the Mouse Striatum as Revealed by Single-Cell RNA-Seq. | 2016-07-26 | 10.1016/j.celrep.2016.06.059 | 125 | view | |
| Diaz | Bioinformatics | SCell: integrated analysis of single-cell RNA-seq data. | 2016-07-15 | 10.1093/bioinformatics/btw201 | 35 | view | |
| Vu | Bioinformatics | Beta-Poisson model for single-cell RNA-seq data analyses. | 2016-07-15 | 10.1093/bioinformatics/btw202 | 69 | view | |
| Bremges | Bioinformatics | MeCorS: Metagenome-enabled error correction of single cell sequencing reads. | 2016-07-15 | 10.1093/bioinformatics/btw144 | 7 | view | |
| Scialdone | Nature | Resolving early mesoderm diversification through single-cell expression profiling. | 2016-07-14 | 10.1038/nature18633 | 156 | view | |
| Nichterwitz | Nat Commun | Laser capture microscopy coupled with Smart-seq2 for precise spatial transcriptomic profiling. | 2016-07-08 | 10.1038/ncomms12139 | 96 | view | |
| Eltahla | Immunol. Cell Biol. | Linking the T cell receptor to the single cell transcriptome in antigen-specific human T cells. | 2016-07-01 | 10.1038/icb.2016.16 | 62 | view | |
| Fang | Curr Protoc Mol Biol | Depletion of Ribosomal RNA Sequences from Single-Cell RNA-Sequencing Library. | 2016-07-01 | 10.1002/cpmb.11 | 2 | view | |
| Anchang | Nat Protoc | Visualization and cellular hierarchy inference of single-cell data using SPADE. | 2016-07-01 | 10.1038/nprot.2016.066 | 70 | view | |
| Jiang | Genome Biol. | GiniClust: detecting rare cell types from single-cell gene expression data with Gini index. | 2016-07-01 | 10.1186/s13059-016-1010-4 | 118 | view | |
| Morris | Trends Biotechnol. | Single-Cell RNA-Seq Steps Up to the Growth Plate. | 2016-07-01 | 10.1016/j.tibtech.2016.05.007 | 3 | view | |
| Liu | PLoS ONE | Nonlinear Network Reconstruction from Gene Expression Data Using Marginal Dependencies Measured by DCOL. | 2016-07-01 | 10.1371/journal.pone.0158247 | 1 | view | |
| Chen | Nat Commun | Mpath maps multi-branching single-cell trajectories revealing progenitor cell progression during development. | 2016-06-30 | 10.1038/ncomms11988 | 57 | view | |
| Zhang | Oncotarget | Tumor-selective replication herpes simplex virus-based technology significantly improves clinical detection and prognostication of viable circulating tumor cells. | 2016-06-28 | 10.18632/oncotarget.9465 | 21 | view | |
| Treutlein | Nature | Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq. | 2016-06-16 | 10.1038/nature18323 | 137 | view | |
| Schmidt | Pharmaceuticals (Basel) | Tumor Heterogeneity, Single-Cell Sequencing, and Drug Resistance. | 2016-06-16 | 10.3390/ph9020033 | 51 | view | |
| Schissler | Bioinformatics | Analysis of aggregated cell-cell statistical distances within pathways unveils therapeutic-resistance mechanisms in circulating tumor cells. | 2016-06-15 | 10.1093/bioinformatics/btw248 | 8 | view | |
| De Sano | Bioinformatics | TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data. | 2016-06-15 | 10.1093/bioinformatics/btw035 | view | ||
| Marques | Science | Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system. | 2016-06-10 | 10.1126/science.aaf6463 | 319 | view | |
| McDavid | Nat. Biotechnol. | The contribution of cell cycle to heterogeneity in single-cell RNA-seq data. | 2016-06-09 | 10.1038/nbt.3498 | 39 | view | |
| Matsumoto | BMC Bioinformatics | SCOUP: a probabilistic model based on the Ornstein-Uhlenbeck process to analyze single-cell expression data during differentiation. | 2016-06-08 | 10.1186/s12859-016-1109-3 | 26 | view | |
| Chan | Biochem. Biophys. Res. Commun. | Heterogeneity of Mesp1+ mesoderm revealed by single-cell RNA-seq. | 2016-06-03 | 10.1016/j.bbrc.2016.04.139 | 5 | view | |
| Krzywinski | Mol. Cell | Visualizing Clonal Evolution in Cancer. | 2016-06-02 | 10.1016/j.molcel.2016.05.025 | 4 | view | |
| Marr | Curr. Opin. Biotechnol. | Single-cell gene expression profiling and cell state dynamics: collecting data, correlating data points and connecting the dots. | 2016-06-01 | 10.1016/j.copbio.2016.04.015 | 25 | view | |
| Drissen | Nat. Immunol. | Distinct myeloid progenitor-differentiation pathways identified through single-cell RNA sequencing. | 2016-06-01 | 10.1038/ni.3412 | 122 | view | |
| Caiado | FEBS J. | Intra-tumour heterogeneity - going beyond genetics. | 2016-06-01 | 10.1111/febs.13705 | 45 | view | |
| Engel | Nat. Immunol. | Innate-like functions of natural killer T cell subsets result from highly divergent gene programs. | 2016-06-01 | 10.1038/ni.3437 | 121 | view | |
| Ryu | Hum. Genet. | Deciphering intratumor heterogeneity using cancer genome analysis. | 2016-06-01 | 10.1007/s00439-016-1670-x | 17 | view | |
| Bakker | Genome Biol. | Single-cell sequencing reveals karyotype heterogeneity in murine and human malignancies. | 2016-05-31 | 10.1186/s13059-016-0971-7 | 71 | view | |
| Ntranos | Genome Biol. | Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts. | 2016-05-26 | 10.1186/s13059-016-0970-8 | 67 | view | |
| Zhou | Nature | Tracing haematopoietic stem cell formation at single-cell resolution. | 2016-05-26 | 10.1038/nature17997 | 83 | view | |
| Kim | J Neuroinflammation | Brain trauma elicits non-canonical macrophage activation states. | 2016-05-24 | 10.1186/s12974-016-0581-z | 63 | view | |
| Welch | Genome Biol. | SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data. | 2016-05-23 | 10.1186/s13059-016-0975-3 | 108 | view | |
| Li | Cell Rep | Systematic Reconstruction of Molecular Cascades Regulating GP Development Using Single-Cell RNA-Seq. | 2016-05-17 | 10.1016/j.celrep.2016.04.043 | 28 | view | |
| Lutas | Elife | The leak channel NALCN controls tonic firing and glycolytic sensitivity of substantia nigra pars reticulata neurons. | 2016-05-13 | 10.7554/eLife.15271 | 14 | view | |
| Proserpio | Genome Biol. | Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation. | 2016-05-12 | 10.1186/s13059-016-0957-5 | view | ||
| Crow | Genome Biol. | Exploiting single-cell expression to characterize co-expression replicability. | 2016-05-06 | 10.1186/s13059-016-0964-6 | 33 | view | |
| Nowakowski | Cell Stem Cell | Expression Analysis Highlights AXL as a Candidate Zika Virus Entry Receptor in Neural Stem Cells. | 2016-05-05 | 10.1016/j.stem.2016.03.012 | 367 | view | |
| Miner | Cell Stem Cell | Understanding How Zika Virus Enters and Infects Neural Target Cells. | 2016-05-05 | 10.1016/j.stem.2016.04.009 | 33 | view | |
| Welch | Nucleic Acids Res. | Robust detection of alternative splicing in a population of single cells. | 2016-05-05 | 10.1093/nar/gkv1525 | 34 | view | |
| Jahn | Genome Biol. | Tree inference for single-cell data. | 2016-05-05 | 10.1186/s13059-016-0936-x | 109 | view | |
| Petropoulos | Cell | Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos. | 2016-05-05 | 10.1016/j.cell.2016.03.023 | 382 | view | |
| Ciuffi | Viruses | Single-Cell Genomics for Virology. | 2016-05-04 | 10.3390/v8050123 | 26 | view | |
| Nguyen | Nat Commun | Highly variable cancer subpopulations that exhibit enhanced transcriptome variability and metastatic fitness. | 2016-05-03 | 10.1038/ncomms11246 | 52 | view | |
| Meyer | Cancer Discov | DNMT3A Haploinsufficiency Transforms FLT3ITD Myeloproliferative Disease into a Rapid, Spontaneous, and Fully Penetrant Acute Myeloid Leukemia. | 2016-05-01 | 10.1158/2159-8290.CD-16-0008 | 48 | view | |
| Leng | Bioinformatics | OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data. | 2016-05-01 | 10.1093/bioinformatics/btw004 | 14 | view | |
| Scholz | Chem. Senses | Transcriptome Analysis of Murine Olfactory Sensory Neurons during Development Using Single Cell RNA-Seq. | 2016-05-01 | 10.1093/chemse/bjw003 | 24 | view | |
| Rossjohn | Mucosal Immunol | A biased view toward celiac disease. | 2016-05-01 | 10.1038/mi.2016.17 | 2 | view | |
| Smith | Cytometry A | Cytometric routes to single cell transcriptomics. | 2016-05-01 | 10.1002/cyto.a.22869 | 2 | view | |
| Koh | PLoS ONE | Dynamic ASXL1 Exon Skipping and Alternative Circular Splicing in Single Human Cells. | 2016-05-01 | 10.1371/journal.pone.0164085 | 8 | view | |
| Kim | Genome Biol. | Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma. | 2016-04-29 | 10.1186/s13059-016-0945-9 | 86 | view | |
| Hashimshony | Genome Biol. | CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq. | 2016-04-28 | 10.1186/s13059-016-0938-8 | 195 | view | |
| Lun | Genome Biol. | Pooling across cells to normalize single-cell RNA sequencing data with many zero counts. | 2016-04-27 | 10.1186/s13059-016-0947-7 | 342 | view | |
| Molinaro | Genome Biol. | In silico lineage tracing through single cell transcriptomics identifies a neural stem cell population in planarians. | 2016-04-27 | 10.1186/s13059-016-0937-9 | 50 | view | |
| Nelson | Nat Commun | Single-cell RNA-seq reveals cell type-specific transcriptional signatures at the maternal-foetal interface during pregnancy. | 2016-04-25 | 10.1038/ncomms11414 | 22 | view | |
| Lacar | Nat Commun | Nuclear RNA-seq of single neurons reveals molecular signatures of activation. | 2016-04-19 | 10.1038/ncomms11022 | 199 | view | |
| Ross | Genome Biol. | OncoNEM: inferring tumor evolution from single-cell sequencing data. | 2016-04-15 | 10.1186/s13059-016-0929-9 | 128 | view | |
| Wen | Genome Biol. | Single-cell sequencing in stem cell biology. | 2016-04-15 | 10.1186/s13059-016-0941-0 | 70 | view | |
| Ma | Genome Biol. | Single-cell profiling of lncRNAs in the developing human brain. | 2016-04-14 | 10.1186/s13059-016-0933-0 | 9 | view | |
| Liu | Genome Biol. | Single-cell analysis of long non-coding RNAs in the developing human neocortex. | 2016-04-14 | 10.1186/s13059-016-0932-1 | 191 | view | |
| Scimone | Elife | Two FGFRL-Wnt circuits organize the planarian anteroposterior axis. | 2016-04-11 | 10.7554/eLife.12845 | 58 | view | |
| Tirosh | Science | Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq. | 2016-04-08 | 10.1126/science.aad0501 | 1348 | view | |
| Bacher | Genome Biol. | Design and computational analysis of single-cell RNA-sequencing experiments. | 2016-04-07 | 10.1186/s13059-016-0927-y | 267 | view | |
| Lv | Oncotarget | Systematic characterization of lncRNAs' cell-to-cell expression heterogeneity in glioblastoma cells. | 2016-04-05 | 10.18632/oncotarget.7580 | view | ||
| Efroni | Genome Biol. | The potential of single-cell profiling in plants. | 2016-04-05 | 10.1186/s13059-016-0931-2 | 38 | view | |
| Krjutškov | Hum. Reprod. | Single-cell transcriptome analysis of endometrial tissue. | 2016-04-01 | 10.1093/humrep/dew008 | 30 | view | |
| Björklund | Nat. Immunol. | The heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell RNA sequencing. | 2016-04-01 | 10.1038/ni.3368 | view | ||
| Stubbington | Nat. Methods | T cell fate and clonality inference from single-cell transcriptomes. | 2016-04-01 | 10.1038/nmeth.3800 | 231 | view | |
| Bai | PLoS ONE | RNA-Seq Profiling of Intact and Enucleated Oocyte SCNT Embryos Reveals the Role of Pig Oocyte Nucleus in Somatic Reprogramming. | 2016-04-01 | 10.1371/journal.pone.0153093 | 4 | view | |
| Telley | Science | Sequential transcriptional waves direct the differentiation of newborn neurons in the mouse neocortex. | 2016-03-25 | 10.1126/science.aad8361 | 171 | view | |
| Grover | Nat Commun | Single-cell RNA sequencing reveals molecular and functional platelet bias of aged haematopoietic stem cells. | 2016-03-24 | 10.1038/ncomms11075 | 93 | view | |
| Xin | Proc. Natl. Acad. Sci. U.S.A. | Use of the Fluidigm C1 platform for RNA sequencing of single mouse pancreatic islet cells. | 2016-03-22 | 10.1073/pnas.1602306113 | 74 | view | |
| Freeman | Sci Rep | Single-cell RNA-seq reveals activation of unique gene groups as a consequence of stem cell-parenchymal cell fusion. | 2016-03-21 | 10.1038/srep23270 | 17 | view | |
| Zhang | Cancer Res. | Single-Cell Sequencing for Precise Cancer Research: Progress and Prospects. | 2016-03-15 | 10.1158/0008-5472.CAN-15-1907 | 63 | view | |
| Handel | Hum. Mol. Genet. | Assessing similarity to primary tissue and cortical layer identity in induced pluripotent stem cell-derived cortical neurons through single-cell transcriptomics. | 2016-03-01 | 10.1093/hmg/ddv637 | 43 | view | |
| Fan | Nat. Methods | Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis. | 2016-03-01 | 10.1038/nmeth.3734 | 190 | view | |
| Angermueller | Nat. Methods | Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity. | 2016-03-01 | 10.1038/nmeth.3728 | 298 | view | |
| Gerovska | Mol. Hum. Reprod. | Does mouse embryo primordial germ cell activation start before implantation as suggested by single-cell transcriptomics dynamics? | 2016-03-01 | 10.1093/molehr/gav072 | 13 | view | |
| Knouse | Genome Res. | Assessment of megabase-scale somatic copy number variation using single-cell sequencing. | 2016-03-01 | 10.1101/gr.198937.115 | 58 | view | |
| Koch | Nat. Rev. Genet. | Epigenomics: Parallel single-cell sequencing. | 2016-03-01 | 10.1038/nrg.2016.5 | view | ||
| Delmans | BMC Bioinformatics | Discrete distributional differential expression (D3E)--a tool for gene expression analysis of single-cell RNA-seq data. | 2016-02-29 | 10.1186/s12859-016-0944-6 | view | ||
| Nakamura | Sci Rep | Culture-independent method for identification of microbial enzyme-encoding genes by activity-based single-cell sequencing using a water-in-oil microdroplet platform. | 2016-02-26 | 10.1038/srep22259 | 13 | view | |
| Evrony | Elife | Resolving rates of mutation in the brain using single-neuron genomics. | 2016-02-22 | 10.7554/eLife.12966 | 74 | view | |
| Ilicic | Genome Biol. | Classification of low quality cells from single-cell RNA-seq data. | 2016-02-17 | 10.1186/s13059-016-0888-1 | 199 | view | |
| Chea | Cell Rep | Single-Cell Gene Expression Analyses Reveal Heterogeneous Responsiveness of Fetal Innate Lymphoid Progenitors to Notch Signaling. | 2016-02-16 | 10.1016/j.celrep.2016.01.015 | 43 | view | |
| Macaulay | Cell Rep | Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells. | 2016-02-02 | 10.1016/j.celrep.2015.12.082 | 93 | view | |
| Cadwell | Nat. Biotechnol. | Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq. | 2016-02-01 | 10.1038/nbt.3445 | 204 | view | |
| Fuzik | Nat. Biotechnol. | Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes. | 2016-02-01 | 10.1038/nbt.3443 | 179 | view | |
| Li | EMBO Rep. | Single-cell transcriptomes reveal characteristic features of human pancreatic islet cell types. | 2016-02-01 | 10.15252/embr.201540946 | 143 | view | |
| Tasic | Nat. Neurosci. | Adult mouse cortical cell taxonomy revealed by single cell transcriptomics. | 2016-02-01 | 10.1038/nn.4216 | 781 | view | |
| Yu | Genomics Proteomics Bioinformatics | Single-cell Transcriptome Study as Big Data. | 2016-02-01 | 10.1016/j.gpb.2016.01.005 | 20 | view | |
| Harbom | Bioessays | Single neuron transcriptome analysis can reveal more than cell type classification: Does it matter if every neuron is unique? | 2016-02-01 | 10.1002/bies.201500097 | 11 | view | |
| Martignetti | Front Genet | ROMA: Representation and Quantification of Module Activity from Target Expression Data. | 2016-02-01 | 10.3389/fgene.2016.00018 | 21 | view | |
| Movahedi | Front Bioeng Biotechnol | Efficient Synergistic Single-Cell Genome Assembly. | 2016-02-01 | 10.3389/fbioe.2016.00042 | 5 | view | |
| Ford | Am. J. Transplant. | Single-Cell Transcriptomics Comes of Age. | 2016-02-01 | 10.1111/ajt.13719 | view | ||
| Ye | Anal Cell Pathol (Amst) | Single-Cell Sequencing Technology in Oncology: Applications for Clinical Therapies and Research. | 2016-02-01 | 10.1155/2016/9369240 | 4 | view | |
| Winkel | Front Microbiol | Single-cell Sequencing of Thiomargarita Reveals Genomic Flexibility for Adaptation to Dynamic Redox Conditions. | 2016-02-01 | 10.3389/fmicb.2016.00964 | 25 | view | |
| Liu | Cell Discov | Identification of key factors conquering developmental arrest of somatic cell cloned embryos by combining embryo biopsy and single-cell sequencing. | 2016-02-01 | 10.1038/celldisc.2016.10 | 46 | view | |
| Schultze | Immunity | Myelopoiesis Reloaded: Single-Cell Transcriptomics Leads the Way. | 2016-01-19 | 10.1016/j.immuni.2015.12.019 | 7 | view | |
| Kim | Nat Commun | Corrigendum: Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression. | 2016-01-11 | 10.1038/ncomms10415 | 1 | view | |
| Kimmerling | Nat Commun | A microfluidic platform enabling single-cell RNA-seq of multigenerational lineages. | 2016-01-06 | 10.1038/ncomms10220 | 70 | view | |
| Spaethling | FASEB J. | Single-cell transcriptomics and functional target validation of brown adipocytes show their complex roles in metabolic homeostasis. | 2016-01-01 | 10.1096/fj.15-273797 | 17 | view | |
| Li | Cell Res. | Somatosensory neuron types identified by high-coverage single-cell RNA-sequencing and functional heterogeneity. | 2016-01-01 | 10.1038/cr.2015.149 | 129 | view | |
| Andreou | Curr Protoc Mol Biol | Single-Cell Genome and Transcriptome Sequencing Library Construction Using Combination of MDA and Nextera Library Prep Method. | 2016-01-01 | 10.1002/0471142727.mb0723s113 | view | ||
| Camp | Proc. Natl. Acad. Sci. U.S.A. | Human cerebral organoids recapitulate gene expression programs of fetal neocortex development. | 2015-12-22 | 10.1073/pnas.1520760112 | 458 | view | |
| Saraiva | Sci Rep | Hierarchical deconstruction of mouse olfactory sensory neurons: from whole mucosa to single-cell RNA-seq. | 2015-12-16 | 10.1038/srep18178 | 66 | view | |
| Finak | Genome Biol. | MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data. | 2015-12-10 | 10.1186/s13059-015-0844-5 | 364 | view | |
| Hanchate | Science | Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis. | 2015-12-04 | 10.1126/science.aad2456 | 123 | view | |
| Wang | Cell | CD5L/AIM Regulates Lipid Biosynthesis and Restrains Th17 Cell Pathogenicity. | 2015-12-03 | 10.1016/j.cell.2015.10.068 | 182 | view | |
| Gaublomme | Cell | Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity. | 2015-12-03 | 10.1016/j.cell.2015.11.009 | 254 | view | |
| Kebschull | Nucleic Acids Res. | Sources of PCR-induced distortions in high-throughput sequencing data sets. | 2015-12-02 | 10.1093/nar/gkv717 | 82 | view | |
| Kowalczyk | Genome Res. | Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells. | 2015-12-01 | 10.1101/gr.192237.115 | 248 | view | |
| Grün | Cell | Design and Analysis of Single-Cell Sequencing Experiments. | 2015-11-05 | 10.1016/j.cell.2015.10.039 | 177 | view | |
| Pierson | Genome Biol. | ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis. | 2015-11-02 | 10.1186/s13059-015-0805-z | 331 | view | |
| Wang | Integr Biol (Camb) | RNA-seq based transcriptomic analysis of single bacterial cells. | 2015-11-01 | 10.1039/c5ib00191a | 51 | view | |
| Guo | PLoS Comput. Biol. | SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis. | 2015-11-01 | 10.1371/journal.pcbi.1004575 | 91 | view | |
| Martijn | ISME J | Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution. | 2015-11-01 | 10.1038/ismej.2015.46 | 20 | view | |
| Labonté | ISME J | Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton. | 2015-11-01 | 10.1038/ismej.2015.48 | 116 | view | |
| Urbieta | Biotechnol. Adv. | Thermophiles in the genomic era: Biodiversity, science, and applications. | 2015-11-01 | 10.1016/j.biotechadv.2015.04.007 | 79 | view | |
| Osborne | Cytometry A | Development of a novel cell sorting method that samples population diversity in flow cytometry. | 2015-11-01 | 10.1002/cyto.a.22678 | 7 | view | |
| Choubey | PLoS Comput. Biol. | Deciphering Transcriptional Dynamics In Vivo by Counting Nascent RNA Molecules. | 2015-11-01 | 10.1371/journal.pcbi.1004345 | 21 | view | |
| Kim | Nat Commun | Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression. | 2015-10-22 | 10.1038/ncomms9687 | 112 | view | |
| Juliá | Bioinformatics | Sincell: an R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seq. | 2015-10-15 | 10.1093/bioinformatics/btv368 | 42 | view | |
| Shi | Development | Dynamic transcriptional symmetry-breaking in pre-implantation mammalian embryo development revealed by single-cell RNA-seq. | 2015-10-15 | 10.1242/dev.123950 | 66 | view | |
| Burns | Nat Commun | Single-cell RNA-Seq resolves cellular complexity in sensory organs from the neonatal inner ear. | 2015-10-15 | 10.1038/ncomms9557 | 124 | view | |
| Dulin | J. Neurosci. | Transcriptomic Approaches to Neural Repair. | 2015-10-14 | 10.1523/JNEUROSCI.2599-15.2015 | 19 | view | |
| Barry Roche | Sci Rep | An assessment of the amount of untapped fold level novelty in under-sampled areas of the tree of life. | 2015-10-05 | 10.1038/srep14717 | view | ||
| Lodato | Science | Somatic mutation in single human neurons tracks developmental and transcriptional history. | 2015-10-02 | 10.1126/science.aab1785 | 263 | view | |
| Leng | Nat. Methods | Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments. | 2015-10-01 | 10.1038/nmeth.3549 | 100 | view | |
| Freeman | PLoS ONE | Single-Cell RNA-Seq of Bone Marrow-Derived Mesenchymal Stem Cells Reveals Unique Profiles of Lineage Priming. | 2015-10-01 | 10.1371/journal.pone.0136199 | 21 | view | |
| Kolodziejczyk | Cell Stem Cell | Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation. | 2015-10-01 | 10.1016/j.stem.2015.09.011 | 280 | view | |
| Navin | Genome Res. | The first five years of single-cell cancer genomics and beyond. | 2015-10-01 | 10.1101/gr.191098.115 | 158 | view | |
| Fu | Proc. Natl. Acad. Sci. U.S.A. | Uniform and accurate single-cell sequencing based on emulsion whole-genome amplification. | 2015-09-22 | 10.1073/pnas.1513988112 | 107 | view | |
| Tsang | Genome Biol. | Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells. | 2015-09-21 | 10.1186/s13059-015-0739-5 | 64 | view | |
| Miyamoto | Science | RNA-Seq of single prostate CTCs implicates noncanonical Wnt signaling in antiandrogen resistance. | 2015-09-18 | 10.1126/science.aab0917 | 422 | view | |
| Blakeley | Development | Defining the three cell lineages of the human blastocyst by single-cell RNA-seq. | 2015-09-15 | 10.1242/dev.123547 | view | ||
| Töhönen | Nat Commun | Novel PRD-like homeodomain transcription factors and retrotransposon elements in early human development. | 2015-09-11 | 10.1038/ncomms9207 | 56 | view | |
| Avraham | Cell | Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses. | 2015-09-10 | 10.1016/j.cell.2015.08.027 | 114 | view | |
| Tay | Cell | Single-Cell Analysis: The Differences That Kill. | 2015-09-10 | 10.1016/j.cell.2015.08.053 | 3 | view | |
| Shin | Cell Stem Cell | Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis. | 2015-09-03 | 10.1016/j.stem.2015.07.013 | 446 | view | |
| Llorens-Bobadilla | Cell Stem Cell | Single-Cell Transcriptomics Reveals a Population of Dormant Neural Stem Cells that Become Activated upon Brain Injury. | 2015-09-03 | 10.1016/j.stem.2015.07.002 | 347 | view | |
| Scialdone | Methods | Computational assignment of cell-cycle stage from single-cell transcriptome data. | 2015-09-01 | 10.1016/j.ymeth.2015.06.021 | 106 | view | |
| Meredith | Nat. Immunol. | Aire controls gene expression in the thymic epithelium with ordered stochasticity. | 2015-09-01 | 10.1038/ni.3247 | 120 | view | |
| Brennecke | Nat. Immunol. | Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary thymic epithelial cells. | 2015-09-01 | 10.1038/ni.3246 | 72 | view | |
| Okawa | Stem Cell Res | A computational strategy for predicting lineage specifiers in stem cell subpopulations. | 2015-09-01 | 10.1016/j.scr.2015.08.006 | 8 | view | |
| Martinez | J. Immunol. Methods | Identification of T cell clones without the need for sequencing. | 2015-09-01 | 10.1016/j.jim.2015.04.018 | 3 | view | |
| Stoeger | Methods | Computer vision for image-based transcriptomics. | 2015-09-01 | 10.1016/j.ymeth.2015.05.016 | 25 | view | |
| Sun | Cancer Lett. | Recent advances and current issues in single-cell sequencing of tumors. | 2015-08-28 | 10.1016/j.canlet.2015.04.022 | 18 | view | |
| Hasegawa | PLoS Genet. | Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development. | 2015-08-01 | 10.1371/journal.pgen.1005428 | 41 | view | |
| de Vargas Roditi | Curr. Opin. Biotechnol. | Computational and experimental single cell biology techniques for the definition of cell type heterogeneity, interplay and intracellular dynamics. | 2015-08-01 | 10.1016/j.copbio.2014.10.010 | view | ||
| Zoller | Mol. Syst. Biol. | Structure of silent transcription intervals and noise characteristics of mammalian genes. | 2015-07-27 | 10.15252/msb.20156257 | 59 | view | |
| Fan | Genome Biol. | Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos. | 2015-07-23 | 10.1186/s13059-015-0706-1 | 143 | view | |
| Gavelis | BMC Genomics | Single-cell transcriptomics using spliced leader PCR: Evidence for multiple losses of photosynthesis in polykrikoid dinoflagellates. | 2015-07-17 | 10.1186/s12864-015-1636-8 | 14 | view | |
| Navin | Sci Transl Med | Delineating cancer evolution with single-cell sequencing. | 2015-07-15 | 10.1126/scitranslmed.aac8319 | 27 | view | |
| Ding | Bioinformatics | Normalization and noise reduction for single cell RNA-seq experiments. | 2015-07-01 | 10.1093/bioinformatics/btv122 | 64 | view | |
| Herderschee | J. Leukoc. Biol. | Emerging single-cell technologies in immunology. | 2015-07-01 | 10.1189/jlb.6RU0115-020R | 17 | view | |
| Wadsworth | Genome Biol. | Marrying microfluidics and microwells for parallel, high-throughput single-cell genomics. | 2015-06-20 | 10.1186/s13059-015-0695-0 | 2 | view | |
| Kim | Genome Biol. | Single-cell mRNA sequencing identifies subclonal heterogeneity in anti-cancer drug responses of lung adenocarcinoma cells. | 2015-06-19 | 10.1186/s13059-015-0692-3 | 125 | view | |
| Ning | Sci Rep | Quantitative assessment of single-cell whole genome amplification methods for detecting copy number variation using hippocampal neurons. | 2015-06-19 | 10.1038/srep11415 | 33 | view | |
| Hatch | Cell | Linking Micronuclei to Chromosome Fragmentation. | 2015-06-18 | 10.1016/j.cell.2015.06.005 | 26 | view | |
| Darmanis | Proc. Natl. Acad. Sci. U.S.A. | A survey of human brain transcriptome diversity at the single cell level. | 2015-06-09 | 10.1073/pnas.1507125112 | 500 | view | |
| Dueck | Genome Biol. | Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation. | 2015-06-09 | 10.1186/s13059-015-0683-4 | 66 | view | |
| Bose | Genome Biol. | Scalable microfluidics for single-cell RNA printing and sequencing. | 2015-06-06 | 10.1186/s13059-015-0684-3 | 65 | view | |
| Sun | Clin Rev Allergy Immunol | The coexistence of Sjögren's syndrome and primary biliary cirrhosis: a comprehensive review. | 2015-06-01 | 10.1007/s12016-015-8471-1 | view | ||
| Chen | PLoS ONE | Correction: comparison of multiple displacement amplification (MDA) and multiple annealing and looping-based amplification cycles (MALBAC) in single-cell sequencing. | 2015-06-01 | 10.1371/journal.pone.0124990 | 5 | view | |
| Vallejos | PLoS Comput. Biol. | BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. | 2015-06-01 | 10.1371/journal.pcbi.1004333 | 107 | view | |
| Kolodziejczyk | Mol. Cell | The technology and biology of single-cell RNA sequencing. | 2015-05-21 | 10.1016/j.molcel.2015.04.005 | 499 | view | |
| Klein | Cell | Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells. | 2015-05-21 | 10.1016/j.cell.2015.04.044 | 1479 | view | |
| Junker | Mol. Cell | Single-cell transcriptomics enters the age of mass production. | 2015-05-21 | 10.1016/j.molcel.2015.05.019 | 17 | view | |
| Wang | Mol. Cell | Advances and applications of single-cell sequencing technologies. | 2015-05-21 | 10.1016/j.molcel.2015.05.005 | 217 | view | |
| Nakamura | Nucleic Acids Res. | SC3-seq: a method for highly parallel and quantitative measurement of single-cell gene expression. | 2015-05-19 | 10.1093/nar/gkv134 | 72 | view | |
| Achim | Nat. Biotechnol. | High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin. | 2015-05-01 | 10.1038/nbt.3209 | 170 | view | |
| Satija | Nat. Biotechnol. | Spatial reconstruction of single-cell gene expression data. | 2015-05-01 | 10.1038/nbt.3192 | 1073 | view | |
| Voet | Genome Biol. | SNES makes sense? Single-cell exome sequencing evolves. | 2015-04-29 | 10.1186/s13059-015-0650-0 | 5 | view | |
| Zhang | Nat Commun | Calibrating genomic and allelic coverage bias in single-cell sequencing. | 2015-04-16 | 10.1038/ncomms7822 | 50 | view | |
| Suzuki | Genome Biol. | Single-cell analysis of lung adenocarcinoma cell lines reveals diverse expression patterns of individual cells invoked by a molecular target drug treatment. | 2015-04-03 | 10.1186/s13059-015-0636-y | 49 | view | |
| Lv | Mol. Genet. Genomics | Identification of 4438 novel lincRNAs involved in mouse pre-implantation embryonic development. | 2015-04-01 | 10.1007/s00438-014-0952-z | 22 | view | |
| Burgess | Nat. Rev. Genet. | Technology: Bead capture for single-cell transcriptomics. | 2015-04-01 | 10.1038/nrg3919 | 1 | view | |
| Xu | Clin. Chem. | Embryo genome profiling by single-cell sequencing for preimplantation genetic diagnosis in a β-thalassemia family. | 2015-04-01 | 10.1373/clinchem.2014.228569 | 21 | view | |
| Ji | PLoS ONE | A simple strategy for reducing false negatives in calling variants from single-cell sequencing data. | 2015-04-01 | 10.1371/journal.pone.0123789 | 1 | view | |
| Junankar | Nat Commun | ID4 controls mammary stem cells and marks breast cancers with a stem cell-like phenotype. | 2015-03-27 | 10.1038/ncomms7548 | 36 | view | |
| Lindeman | Curr. Biol. | Sexual cell-fate reprogramming in the ovary by DMRT1. | 2015-03-16 | 10.1016/j.cub.2015.01.034 | 87 | view | |
| Castelle | Curr. Biol. | Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling. | 2015-03-16 | 10.1016/j.cub.2015.01.014 | 289 | view | |
| Zhang | Bioinformatics | WemIQ: an accurate and robust isoform quantification method for RNA-seq data. | 2015-03-15 | 10.1093/bioinformatics/btu757 | 24 | view | |
| Olarerin-George | Nucleic Acids Res. | Assessing the prevalence of mycoplasma contamination in cell culture via a survey of NCBI's RNA-seq archive. | 2015-03-11 | 10.1093/nar/gkv136 | view | ||
| Zeisel | Science | Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq. | 2015-03-06 | 10.1126/science.aaa1934 | 2 | view | |
| Stegle | Nat. Rev. Genet. | Computational and analytical challenges in single-cell transcriptomics. | 2015-03-01 | 10.1038/nrg3833 | 439 | view | |
| Dey | Nat. Biotechnol. | Integrated genome and transcriptome sequencing of the same cell. | 2015-03-01 | 10.1038/nbt.3129 | 274 | view | |
| Oka | Sci Rep | Whole-mount single molecule FISH method for zebrafish embryo. | 2015-02-25 | 10.1038/srep08571 | 17 | view | |
| Eirew | Nature | Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution. | 2015-02-19 | 10.1038/nature13952 | 432 | view | |
| Buettner | Nat. Biotechnol. | Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells. | 2015-02-01 | 10.1038/nbt.3102 | 619 | view | |
| Liu | Biomed Res Int | Gene Coexpression and Evolutionary Conservation Analysis of the Human Preimplantation Embryos. | 2015-02-01 | 10.1155/2015/316735 | 5 | view | |
| Min | PLoS ONE | Identification of Distinct Tumor Subpopulations in Lung Adenocarcinoma via Single-Cell RNA-seq. | 2015-02-01 | 10.1371/journal.pone.0135817 | 34 | view | |
| Wu | Gigascience | Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells. | 2015-02-01 | 10.1186/s13742-015-0091-4 | 42 | view | |
| Barber | Curr. Opin. Genet. Dev. | Dissecting cancer evolution at the macro-heterogeneity and micro-heterogeneity scale. | 2015-02-01 | 10.1016/j.gde.2014.12.001 | 47 | view | |
| Taher | Mol. Hum. Reprod. | Bioinformatics approaches to single-blastomere transcriptomics. | 2015-02-01 | 10.1093/molehr/gau083 | 4 | view | |
| Luo | Front Microbiol | The use of evolutionary approaches to understand single cell genomes. | 2015-02-01 | 10.3389/fmicb.2015.00191 | 4 | view | |
| Kanter | Front Oncol | Single cell transcriptomics: methods and applications. | 2015-02-01 | 10.3389/fonc.2015.00053 | 28 | view | |
| Kumar | Genome Med | Whole genome prediction for preimplantation genetic diagnosis. | 2015-02-01 | 10.1186/s13073-015-0160-4 | 20 | view | |
| Nelson | Front Microbiol | The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle. | 2015-02-01 | 10.3389/fmicb.2015.00713 | 97 | view | |
| Subramanian | BMC Genomics | Reference-free inference of tumor phylogenies from single-cell sequencing data. | 2015-02-01 | 10.1186/1471-2164-16-S11-S7 | 4 | view | |
| Vaughan | Nature | Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury. | 2015-01-29 | 10.1038/nature14112 | 279 | view | |
| Efroni | Genome Biol. | Quantification of cell identity from single-cell gene expression profiles. | 2015-01-22 | 10.1186/s13059-015-0580-x | 43 | view | |
| Borel | Am. J. Hum. Genet. | Biased allelic expression in human primary fibroblast single cells. | 2015-01-08 | 10.1016/j.ajhg.2014.12.001 | 65 | view | |
| Kim | Cell Stem Cell | Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming. | 2015-01-08 | 10.1016/j.stem.2014.11.005 | 112 | view | |
| Usoskin | Nat. Neurosci. | Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing. | 2015-01-01 | 10.1038/nn.3881 | 715 | view | |
| Wei | Biol. Reprod. | Polar bodies in assisted reproductive technology: current progress and future perspectives. | 2015-01-01 | 10.1095/biolreprod.114.125575 | 23 | view | |
| Luo | Genome Biol. | The importance of study design for detecting differentially abundant features in high-throughput experiments. | 2014-12-03 | 10.1186/s13059-014-0527-7 | 14 | view | |
| Picelli | Genome Res. | Tn5 transposase and tagmentation procedures for massively scaled sequencing projects. | 2014-12-01 | 10.1101/gr.177881.114 | 150 | view | |
| Yao | J. Thorac. Cardiovasc. Surg. | Tumor cells are dislodged into the pulmonary vein during lobectomy. | 2014-12-01 | 10.1016/j.jtcvs.2014.06.074 | 14 | view | |
| Chen | PLoS ONE | Comparison of multiple displacement amplification (MDA) and multiple annealing and looping-based amplification cycles (MALBAC) in single-cell sequencing. | 2014-12-01 | 10.1371/journal.pone.0114520 | 41 | view | |
| Abelin | BMC Bioinformatics | A ratiometric-based measure of gene co-expression. | 2014-11-20 | 10.1186/1471-2105-15-331 | 3 | view | |
| McCorrison | BMC Bioinformatics | NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly. | 2014-11-19 | 10.1186/s12859-014-0357-3 | 9 | view | |
| Kolisko | Curr. Biol. | Single-cell transcriptomics for microbial eukaryotes. | 2014-11-17 | 10.1016/j.cub.2014.10.026 | 46 | view | |
| Daley | Bioinformatics | Modeling genome coverage in single-cell sequencing. | 2014-11-15 | 10.1093/bioinformatics/btu540 | 28 | view | |
| Khera | J Transl Med | Single-cell transcriptomics: an emerging tool in the study of cardiometabolic disease. | 2014-11-06 | 10.1186/s12967-014-0312-0 | 1 | view | |
| Huang | Proc. Natl. Acad. Sci. U.S.A. | Time-variant clustering model for understanding cell fate decisions. | 2014-11-04 | 10.1073/pnas.1407388111 | 20 | view | |
| Biase | Genome Res. | Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing. | 2014-11-01 | 10.1101/gr.177725.114 | 148 | view | |
| Ha | Genome Res. | TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data. | 2014-11-01 | 10.1101/gr.180281.114 | 130 | view | |
| Morgan | Cold Spring Harb Perspect Med | Differential Gene Expression in Age-Related Macular Degeneration. | 2014-10-23 | 10.1101/cshperspect.a017210 | 11 | view | |
| Liang | J Genet Genomics | Single-cell sequencing technologies: current and future. | 2014-10-20 | 10.1016/j.jgg.2014.09.005 | 60 | view | |
| Yang | Stem Cell Reports | Generation of haploid spermatids with fertilization and development capacity from human spermatogonial stem cells of cryptorchid patients. | 2014-10-14 | 10.1016/j.stemcr.2014.08.004 | 72 | view | |
| Yu | Anal. Chem. | Microfluidic whole genome amplification device for single cell sequencing. | 2014-10-07 | 10.1021/ac5032176 | 51 | view | |
| Zhang | BMC Genomics | Identification and functional analysis of long non-coding RNAs in mouse cleavage stage embryonic development based on single cell transcriptome data. | 2014-10-03 | 10.1186/1471-2164-15-845 | 55 | view | |
| Streets | Nat. Biotechnol. | How deep is enough in single-cell RNA-seq? | 2014-10-01 | 10.1038/nbt.3039 | 30 | view | |
| Bar-Haim | PLoS ONE | CD8+ TCR transgenic strains expressing public versus private TCR targeting the respiratory syncytial virus K(d)M2(82-90) epitope demonstrate similar functional profiles. | 2014-10-01 | 10.1371/journal.pone.0099249 | view | ||
| Ting | Cell Rep | Single-cell RNA sequencing identifies extracellular matrix gene expression by pancreatic circulating tumor cells. | 2014-09-25 | 10.1016/j.celrep.2014.08.029 | 240 | view | |
| Knouse | Proc. Natl. Acad. Sci. U.S.A. | Single cell sequencing reveals low levels of aneuploidy across mammalian tissues. | 2014-09-16 | 10.1073/pnas.1415287111 | 181 | view | |
| Pettit | PLoS Comput. Biol. | Identifying cell types from spatially referenced single-cell expression datasets. | 2014-09-01 | 10.1371/journal.pcbi.1003824 | 18 | view | |
| Lasken | Nat. Rev. Genet. | Recent advances in genomic DNA sequencing of microbial species from single cells. | 2014-09-01 | 10.1038/nrg3785 | 138 | view | |
| Navin | Genome Biol. | Cancer genomics: one cell at a time. | 2014-08-30 | 10.1186/s13059-014-0452-9 | 208 | view | |
| Wang | Nature | Clonal evolution in breast cancer revealed by single nucleus genome sequencing. | 2014-08-14 | 10.1038/nature13600 | 716 | view | |
| Zhu | J Transl Med | Single-cell transcriptome in the identification of disease biomarkers: opportunities and challenges. | 2014-08-12 | 10.1186/s12967-014-0212-3 | 12 | view | |
| Brunskill | Development | Single cell dissection of early kidney development: multilineage priming. | 2014-08-01 | 10.1242/dev.110601 | 72 | view | |
| Saliba | Nucleic Acids Res. | Single-cell RNA-seq: advances and future challenges. | 2014-08-01 | 10.1093/nar/gku555 | 433 | view | |
| Francis | Cancer Discov | EGFR variant heterogeneity in glioblastoma resolved through single-nucleus sequencing. | 2014-08-01 | 10.1158/2159-8290.CD-13-0879 | 187 | view | |
| Becker | BMC Plant Biol. | Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature. | 2014-08-01 | 10.1186/s12870-014-0197-3 | 40 | view | |
| Gini | Cancer Discov | Greater than the sum of its parts: single-nucleus sequencing identifies convergent evolution of independent EGFR mutants in GBM. | 2014-08-01 | 10.1158/2159-8290.CD-14-0635 | 8 | view | |
| Kharchenko | Nat. Methods | Bayesian approach to single-cell differential expression analysis. | 2014-07-01 | 10.1038/nmeth.2967 | 595 | view | |
| Trombetta | Curr Protoc Mol Biol | Preparation of Single-Cell RNA-Seq Libraries for Next Generation Sequencing. | 2014-07-01 | 10.1002/0471142727.mb0422s107 | 117 | view | |
| Dayarian | Genetics | How to infer relative fitness from a sample of genomic sequences. | 2014-07-01 | 10.1534/genetics.113.160986 | 15 | view | |
| Hughes | PLoS Genet. | Clonal architecture of secondary acute myeloid leukemia defined by single-cell sequencing. | 2014-07-01 | 10.1371/journal.pgen.1004462 | 76 | view | |
| Patel | Science | Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma. | 2014-06-20 | 10.1126/science.1254257 | 1916 | view | |
| Shalek | Nature | Single-cell RNA-seq reveals dynamic paracrine control of cellular variation. | 2014-06-19 | 10.1038/nature13437 | 498 | view | |
| Prjibelski | Bioinformatics | ExSPAnder: a universal repeat resolver for DNA fragment assembly. | 2014-06-15 | 10.1093/bioinformatics/btu266 | 68 | view | |
| Yu | Cell Res. | Discovery of biclonal origin and a novel oncogene SLC12A5 in colon cancer by single-cell sequencing. | 2014-06-01 | 10.1038/cr.2014.43 | 90 | view | |
| Grün | Nat. Methods | Validation of noise models for single-cell transcriptomics. | 2014-06-01 | 10.1038/nmeth.2930 | 423 | view | |
| Baslan | Curr. Opin. Genet. Dev. | Single cell sequencing approaches for complex biological systems. | 2014-06-01 | 10.1016/j.gde.2014.06.004 | 28 | view | |
| Mahata | Cell Rep | Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis. | 2014-05-22 | 10.1016/j.celrep.2014.04.011 | 138 | view | |
| Portmann | Cell Rep | Behavioral abnormalities and circuit defects in the basal ganglia of a mouse model of 16p11.2 deletion syndrome. | 2014-05-22 | 10.1016/j.celrep.2014.03.036 | 91 | view | |
| Treutlein | Nature | Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq. | 2014-05-15 | 10.1038/nature13173 | 877 | view | |
| Streets | Proc. Natl. Acad. Sci. U.S.A. | Microfluidic single-cell whole-transcriptome sequencing. | 2014-05-13 | 10.1073/pnas.1402030111 | 230 | view | |
| Robson | Dev. Cell | Deciphering developmental processes from single-cell transcriptomes. | 2014-05-12 | 10.1016/j.devcel.2014.04.032 | view | ||
| Trapnell | Nat. Biotechnol. | The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. | 2014-04-01 | 10.1038/nbt.2859 | 1478 | view | |
| Roth | Nat. Methods | PyClone: statistical inference of clonal population structure in cancer. | 2014-04-01 | 10.1038/nmeth.2883 | 322 | view | |
| Voo | Methods Mol. Biol. | Sample preparation for single cell transcriptomics: essential oil glands in Citrus fruit peel as an example. | 2014-04-01 | 10.1007/978-1-4939-0606-2_14 | 4 | view | |
| Avital | Genome Biol. | Seeing is believing: new methods for in situ single-cell transcriptomics. | 2014-03-31 | 10.1186/gb4169 | 19 | view | |
| Marinov | Genome Res. | From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing. | 2014-03-01 | 10.1101/gr.161034.113 | 337 | view | |
| Jaitin | Science | Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types. | 2014-02-14 | 10.1126/science.1247651 | 986 | view | |
| Spaethling | FASEB J. | Serotonergic neuron regulation informed by in vivo single-cell transcriptomics. | 2014-02-01 | 10.1096/fj.13-240267 | 41 | view | |
| Islam | Nat. Methods | Quantitative single-cell RNA-seq with unique molecular identifiers. | 2014-02-01 | 10.1038/nmeth.2772 | 711 | view | |
| Ning | Front Oncol | Current challenges in the bioinformatics of single cell genomics. | 2014-02-01 | 10.3389/fonc.2014.00007 | 38 | view | |
| de Bourcy | PLoS ONE | A quantitative comparison of single-cell whole genome amplification methods. | 2014-02-01 | 10.1371/journal.pone.0105585 | view | ||
| Lusk | PLoS ONE | Diverse and widespread contamination evident in the unmapped depths of high throughput sequencing data. | 2014-02-01 | 10.1371/journal.pone.0110808 | 112 | view | |
| Clingenpeel | Front Microbiol | Reconstructing each cell's genome within complex microbial communities-dream or reality? | 2014-02-01 | 10.3389/fmicb.2014.00771 | view | ||
| Kim | BMC Bioinformatics | Using single cell sequencing data to model the evolutionary history of a tumor. | 2014-01-24 | 10.1186/1471-2105-15-27 | 38 | view | |
| Deng | Science | Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells. | 2014-01-10 | 10.1126/science.1245316 | 714 | view | |
| Wu | Nat. Methods | Quantitative assessment of single-cell RNA-sequencing methods. | 2014-01-01 | 10.1038/nmeth.2694 | 541 | view | |
| Picelli | Nat Protoc | Full-length RNA-seq from single cells using Smart-seq2. | 2014-01-01 | 10.1038/nprot.2014.006 | 951 | view | |
| Wong | Semin. Cancer Biol. | Genome-wide association and sequencing studies on colorectal cancer. | 2013-12-01 | 10.1016/j.semcancer.2013.09.005 | 16 | view | |
| Close | BMC Microbiol. | Using phage display selected antibodies to dissect microbiomes for complete de novo genome sequencing of low abundance microbes. | 2013-11-27 | 10.1186/1471-2180-13-270 | 6 | view | |
| Milot | Front Genet | The National DNA Data Bank of Canada: a Quebecer perspective. | 2013-11-20 | 10.3389/fgene.2013.00249 | 8 | view | |
| Katayama | Bioinformatics | SAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization. | 2013-11-15 | 10.1093/bioinformatics/btt511 | 77 | view | |
| Brennecke | Nat. Methods | Accounting for technical noise in single-cell RNA-seq experiments. | 2013-11-01 | 10.1038/nmeth.2645 | 609 | view | |
| Patel | Cancer Lett. | Cancer genome sequencing: understanding malignancy as a disease of the genome, its conformation, and its evolution. | 2013-11-01 | 10.1016/j.canlet.2012.10.018 | 26 | view | |
| Ding | Cancer Lett. | Advances for studying clonal evolution in cancer. | 2013-11-01 | 10.1016/j.canlet.2012.12.028 | 64 | view | |
| Ren | Asian J. Androl. | Investigating intratumour heterogeneity by single-cell sequencing. | 2013-11-01 | 10.1038/aja.2013.106 | 16 | view | |
| McConnell | Science | Mosaic copy number variation in human neurons. | 2013-11-01 | 10.1126/science.1243472 | 419 | view | |
| Spaethling | Curr Opin Pharmacol | Single-cell transcriptomics for drug target discovery. | 2013-10-01 | 10.1016/j.coph.2013.04.011 | 9 | view | |
| Josefsson | PLoS Pathog. | Single cell analysis of lymph node tissue from HIV-1 infected patients reveals that the majority of CD4+ T-cells contain one HIV-1 DNA molecule. | 2013-10-01 | 10.1371/journal.ppat.1003432 | view | ||
| Taghavi | Bioinformatics | Distilled single-cell genome sequencing and de novo assembly for sparse microbial communities. | 2013-10-01 | 10.1093/bioinformatics/btt420 | 6 | view | |
| Adalsteinsson | Integr Biol (Camb) | Single cells from human primary colorectal tumors exhibit polyfunctional heterogeneity in secretions of ELR+ CXC chemokines. | 2013-10-01 | 10.1039/c3ib40059j | view | ||
| Nurk | J. Comput. Biol. | Assembling single-cell genomes and mini-metagenomes from chimeric MDA products. | 2013-10-01 | 10.1089/cmb.2013.0084 | 595 | view | |
| Yan | Nat. Struct. Mol. Biol. | Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells. | 2013-09-01 | 10.1038/nsmb.2660 | 877 | view | |
| Bertelli | Clin. Microbiol. Infect. | Rapid bacterial genome sequencing: methods and applications in clinical microbiology. | 2013-09-01 | 10.1111/1469-0691.12217 | 141 | view | |
| Shapiro | Nat. Rev. Genet. | Single-cell sequencing-based technologies will revolutionize whole-organism science. | 2013-09-01 | 10.1038/nrg3542 | 802 | view | |
| Xue | Nature | Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing. | 2013-08-29 | 10.1038/nature12364 | 556 | view | |
| Shalek | Nature | Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells. | 2013-06-13 | 10.1038/nature12172 | 933 | view | |
| Fitzsimons | Genome Res. | Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome. | 2013-05-01 | 10.1101/gr.142208.112 | 58 | view | |
| Sasagawa | Genome Biol. | Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity. | 2013-04-17 | 10.1186/gb-2013-14-4-r31 | 254 | view | |
| Lasken | Nat. Biotechnol. | Single-cell sequencing in its prime. | 2013-03-01 | 10.1038/nbt.2523 | 54 | view | |
| Moroz | Methods Mol. Biol. | Single-neuron transcriptome and methylome sequencing for epigenomic analysis of aging. | 2013-02-01 | 10.1007/978-1-62703-556-9_21 | 24 | view | |
| Zajac | PLoS ONE | Base preferences in non-templated nucleotide incorporation by MMLV-derived reverse transcriptases. | 2013-02-01 | 10.1371/journal.pone.0085270 | 31 | view | |
| Xu | Genet Res Int | Feasibility of whole RNA sequencing from single-cell mRNA amplification. | 2013-02-01 | 10.1155/2013/724124 | 3 | view | |
| McGettigan | Curr Opin Chem Biol | Transcriptomics in the RNA-seq era. | 2013-02-01 | 10.1016/j.cbpa.2012.12.008 | 206 | view | |
| Soon | Mol. Syst. Biol. | High-throughput sequencing for biology and medicine. | 2013-02-01 | 10.1038/msb.2012.61 | 240 | view | |
| Nikolenko | BMC Genomics | BayesHammer: Bayesian clustering for error correction in single-cell sequencing. | 2013-02-01 | 10.1186/1471-2164-14-S1-S7 | 244 | view | |
| Hills | Genome Med | BAIT: Organizing genomes and mapping rearrangements in single cells. | 2013-02-01 | 10.1186/gm486 | 30 | view | |
| Grad | J Micromech Microeng | A simple add-on microfluidic appliance for accurately sorting small populations of cells with high fidelity. | 2013-02-01 | 10.1088/0960-1317/23/11/117003 | 5 | view | |
| Kim | Genome Biol. | Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data. | 2013-01-28 | 10.1186/gb-2013-14-1-r7 | 83 | view | |
| Zong | Science | Genome-wide detection of single-nucleotide and copy-number variations of a single human cell. | 2012-12-21 | 10.1126/science.1229164 | 797 | view | |
| Hebenstreit | Biology (Basel) | Methods, Challenges and Potentials of Single Cell RNA-seq. | 2012-11-16 | 10.3390/biology1030658 | 40 | view | |
| Falconer | Nat. Methods | DNA template strand sequencing of single-cells maps genomic rearrangements at high resolution. | 2012-11-01 | 10.1038/nmeth.2206 | 100 | view | |
| Hartmaier | Breast Cancer Res. | Who's driving anyway? Herculean efforts to identify the drivers of breast cancer. | 2012-10-31 | 10.1186/bcr3325 | view | ||
| Hashimshony | Cell Rep | CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification. | 2012-09-27 | 10.1016/j.celrep.2012.08.003 | 619 | view | |
| Mason | ISME J | Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill. | 2012-09-01 | 10.1038/ismej.2012.59 | 414 | view | |
| Lasken | Nat. Rev. Microbiol. | Genomic sequencing of uncultured microorganisms from single cells. | 2012-09-01 | 10.1038/nrmicro2857 | 192 | view | |
| Li | Gigascience | Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer. | 2012-08-14 | 10.1186/2047-217X-1-12 | 86 | view | |
| Saunders | EMBO Mol Med | Role of intratumoural heterogeneity in cancer drug resistance: molecular and clinical perspectives. | 2012-08-01 | 10.1002/emmm.201101131 | 153 | view | |
| Yilmaz | Curr. Opin. Biotechnol. | Single cell genome sequencing. | 2012-06-01 | 10.1016/j.copbio.2011.11.018 | 91 | view | |
| Dupont | ISME J | Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage. | 2012-06-01 | 10.1038/ismej.2011.189 | 350 | view | |
| Pamp | Genome Res. | Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB). | 2012-06-01 | 10.1101/gr.131482.111 | 115 | view | |
| Peng | Bioinformatics | IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. | 2012-06-01 | 10.1093/bioinformatics/bts174 | 1555 | view | |
| Bankevich | J. Comput. Biol. | SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. | 2012-05-01 | 10.1089/cmb.2012.0021 | 8773 | view | |
| Hou | Cell | Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. | 2012-03-02 | 10.1016/j.cell.2012.02.028 | 491 | view | |
| Martinez-Garcia | ISME J | Unveiling in situ interactions between marine protists and bacteria through single cell sequencing. | 2012-03-01 | 10.1038/ismej.2011.126 | 57 | view | |
| Ma | Curr. Opin. Genet. Dev. | Opening Pandora's Box--the new biology of driver mutations and clonal evolution in cancer as revealed by next generation sequencing. | 2012-02-01 | 10.1016/j.gde.2012.01.008 | view | ||
| Martinez-Garcia | ISME J | High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton. | 2012-01-01 | 10.1038/ismej.2011.84 | 147 | view | |
| Bartfai | Trends Pharmacol. Sci. | Drug targets: single-cell transcriptomics hastens unbiased discovery. | 2012-01-01 | 10.1016/j.tips.2011.09.006 | 28 | view | |
| de Bekker | Genome Biol. | Single cell transcriptomics of neighboring hyphae of Aspergillus niger. | 2011-08-04 | 10.1186/gb-2011-12-8-r71 | view | ||
| Surman | J. Immunol. | Clonally related CD8+ T cells responsible for rapid population of both diffuse nasal-associated lymphoid tissue and lung after respiratory virus infection. | 2011-07-15 | 10.4049/jimmunol.1100125 | view | ||
| Islam | Genome Res. | Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. | 2011-07-01 | 10.1101/gr.110882.110 | 474 | view | |
| Medvedev | Bioinformatics | Error correction of high-throughput sequencing datasets with non-uniform coverage. | 2011-07-01 | 10.1093/bioinformatics/btr208 | 137 | view | |
| Salman | Syst. Appl. Microbiol. | A single-cell sequencing approach to the classification of large, vacuolated sulfur bacteria. | 2011-06-01 | 10.1016/j.syapm.2011.02.001 | 78 | view | |
| Navin | Genome Med | Future medical applications of single-cell sequencing in cancer. | 2011-05-31 | 10.1186/gm247 | 182 | view | |
| Navin | Nature | Tumour evolution inferred by single-cell sequencing. | 2011-04-07 | 10.1038/nature09807 | 1748 | view | |
| Heywood | ISME J | Capturing diversity of marine heterotrophic protists: one cell at a time. | 2011-04-01 | 10.1038/ismej.2010.155 | 84 | view | |
| Tang | PLoS ONE | Deterministic and stochastic allele specific gene expression in single mouse blastomeres. | 2011-03-01 | 10.1371/journal.pone.0021208 | 130 | view | |
| Eberwine | Pharmacol. Ther. | Single cell transcriptomics of hypothalamic warm sensitive neurons that control core body temperature and fever response Signaling asymmetry and an extension of chemical neuroanatomy. | 2011-03-01 | 10.1016/j.pharmthera.2010.09.010 | 73 | view | |
| Woyke | PLoS ONE | Decontamination of MDA reagents for single cell whole genome amplification. | 2011-01-01 | 10.1371/journal.pone.0026161 | 129 | view | |
| Lingner | BMC Bioinformatics | Predicting phenotypic traits of prokaryotes from protein domain frequencies. | 2010-09-24 | 10.1186/1471-2105-11-481 | 14 | view | |
| Tang | Cell Stem Cell | Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis. | 2010-05-07 | 10.1016/j.stem.2010.03.015 | 472 | view | |
| Liang | BMC Bioinformatics | JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes. | 2009-11-29 | 10.1186/1471-2105-10-391 | 6 | view | |
| Woyke | PLoS ONE | Assembling the marine metagenome, one cell at a time. | 2009-02-01 | 10.1371/journal.pone.0005299 | 313 | view | |
| Altarescu | Prenat. Diagn. | PGD on a recombinant allele: crossover between the TSC2 gene and 'linked' markers impairs accurate diagnosis. | 2008-10-01 | 10.1002/pd.2070 | 26 | view | |
| Ishoey | Curr. Opin. Microbiol. | Genomic sequencing of single microbial cells from environmental samples. | 2008-06-01 | 10.1016/j.mib.2008.05.006 | 156 | view |