Publications in the scientific literature

This list contains 1744 papers covering various topics of single cell sequencing. The list is compiled by searching for keywords in abstracts and titles using data from and The list is automatically updated once every 24h. Rows in blue indicate papers in "high impact" journals.

added within the last 24h to this list.

the study is about a computer software/algorithm/database/pure bioinformatics.

the study is about a new method.

the study is a review or comment.

the study does not involve mammalian scRNA-seq data or raw data are not public.

Include studies:

First author Journal Title Pub. date DOI Citations Action
Todorov Methods Mol. Biol. Network Inference from Single-Cell Transcriptomic Data. 2019-12-01 10.1007/978-1-4939-8882-2_10 view
Guthmiller Methods Mol. Biol. An Efficient Method to Generate Monoclonal Antibodies from Human B Cells. 2019-12-01 10.1007/978-1-4939-8958-4_5 view
Zwarycz Cell Mol Gastroenterol Hepatol IL22 Inhibits Epithelial Stem Cell Expansion in an Ileal Organoid Model. 2019-10-01 10.1016/j.jcmgh.2018.06.008 2 view
Biendarra-Tiegs Stem Cells Dev. Single-cell RNA-seq and optical electrophysiology of human induced pluripotent stem cell-derived cardiomyocytes reveal discordance between cardiac subtype-associated gene expression patterns and electrophysiological phenotypes. 2019-03-20 10.1089/scd.2019.0030 view
Grive PLoS Genet. Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing. 2019-03-20 10.1371/journal.pgen.1007810 view
Singh Sci Rep In situ 10-cell RNA sequencing in tissue and tumor biopsy samples. 2019-03-20 10.1038/s41598-019-41235-9 view
Mizuhashi J. Bone Miner. Res. Growth plate borderline chondrocytes behave as transient mesenchymal precursor cells. 2019-03-19 10.1002/jbmr.3719 view
Wolf Genome Biol. PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells. 2019-03-19 10.1186/s13059-019-1663-x view
Antolović Development Transition state dynamics during a stochastic fate choice. 2019-03-19 10.1242/dev.173740 view
Ernst Nat Commun Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis. 2019-03-19 10.1038/s41467-019-09182-1 view
Ronning Sci Rep Molecular profiling of resident and infiltrating mononuclear phagocytes during rapid adult retinal degeneration using single-cell RNA sequencing. 2019-03-19 10.1038/s41598-019-41141-0 view
Yap Cell Rep In Vivo Generation of Post-infarct Human Cardiac Muscle by Laminin-Promoted Cardiovascular Progenitors. 2019-03-19 10.1016/j.celrep.2019.02.083 view
Stévant Cell Rep Dissecting Cell Lineage Specification and Sex Fate Determination in Gonadal Somatic Cells Using Single-Cell Transcriptomics. 2019-03-19 10.1016/j.celrep.2019.02.069 view
Giandomenico Nat. Neurosci. Cerebral organoids at the air-liquid interface generate diverse nerve tracts with functional output. 2019-03-18 10.1038/s41593-019-0350-2 view
Frishberg Nat. Methods Cell composition analysis of bulk genomics using single-cell data. 2019-03-18 10.1038/s41592-019-0355-5 view
Deng Nat. Methods Scalable analysis of cell-type composition from single-cell transcriptomics using deep recurrent learning. 2019-03-18 10.1038/s41592-019-0353-7 view
Okada Biochem. Biophys. Res. Commun. Transcriptionally distinct mesenchymal stem/stromal cells circulate in fetus. 2019-03-16 10.1016/j.bbrc.2019.03.033 view
Kubo Nucleic Acids Res. Single-cell transcriptome analysis of Physcomitrella leaf cells during reprogramming using microcapillary manipulation. 2019-03-15 10.1093/nar/gkz181 view
Guo Development Defining developmental diversification of diencephalon neurons through single-cell gene expression profiling. 2019-03-14 10.1242/dev.174284 view
Paolillo Clin. Chem. Single-Cell Genomics. 2019-03-14 10.1373/clinchem.2017.283895 view
Chen Sci Rep Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model. 2019-03-14 10.1038/s41598-019-40809-x view
Mucenski Sci Rep Single cell RNA-seq study of wild type and Hox9,10,11 mutant developing uterus. 2019-03-14 10.1038/s41598-019-40923-w view
Dai Nucleic Acids Res. Cell-specific network constructed by single-cell RNA sequencing data. 2019-03-13 10.1093/nar/gkz172 view
Durif Bioinformatics Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis. 2019-03-13 10.1093/bioinformatics/btz177 view
O'Sullivan J. Am. Soc. Nephrol. Complementary Roles for Single-Nucleus and Single-Cell RNA Sequencing in Kidney Disease Research. 2019-03-13 10.1681/ASN.2019020112 view
Zachs Nat Commun Noninvasive ultrasound stimulation of the spleen to treat inflammatory arthritis. 2019-03-12 10.1038/s41467-019-08721-0 view
Veerman Cell Rep Single-Cell Analysis Reveals Heterogeneity of High Endothelial Venules and Different Regulation of Genes Controlling Lymphocyte Entry to Lymph Nodes. 2019-03-12 10.1016/j.celrep.2019.02.042 view
Ranum Cell Rep Insights into the Biology of Hearing and Deafness Revealed by Single-Cell RNA Sequencing. 2019-03-12 10.1016/j.celrep.2019.02.053 view
Wainer Katsir BMC Genomics Human genes escaping X-inactivation revealed by single cell expression data. 2019-03-12 10.1186/s12864-019-5507-6 view
Francesconi Elife Single cell RNA-seq identifies the origins of heterogeneity in efficient cell transdifferentiation and reprogramming. 2019-03-12 10.7554/eLife.41627 view
McCann J. Clin. Invest. Endothelial miR-30c suppresses tumor growth via inhibition of TGF-β-induced Serpine1. 2019-03-11 10.1172/JCI123106 view
Mickelsen Nat. Neurosci. Single-cell transcriptomic analysis of the lateral hypothalamic area reveals molecularly distinct populations of inhibitory and excitatory neurons. 2019-03-11 10.1038/s41593-019-0349-8 view
Klaus Nat. Med. Altered neuronal migratory trajectories in human cerebral organoids derived from individuals with neuronal heterotopia. 2019-03-11 10.1038/s41591-019-0371-0 view
Peyser Am. J. Respir. Cell Mol. Biol. Defining the Activated Fibroblast Population in Lung Fibrosis Using Single Cell Sequencing. 2019-03-08 10.1165/rcmb.2018-0313OC view
Song Analyst Single cell transcriptomics: moving towards multi-omics. 2019-03-08 10.1039/c8an01852a view
Delile Development Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing mouse spinal cord. 2019-03-07 10.1242/dev.173807 view
Fu J. Am. Soc. Nephrol. Single-Cell RNA Profiling of Glomerular Cells Shows Dynamic Changes in Experimental Diabetic Kidney Disease. 2019-03-07 10.1681/ASN.2018090896 view
Treutlein Cell Stem Cell Evaluation of Wu et al.: Strengthening Single-Cell Bioinformatic Comparisons for Improving Organoid Differentiation. 2019-03-07 10.1016/j.stem.2019.02.010 view
Tian Curr. Opin. Nephrol. Hypertens. The myriad possibility of kidney organoids. 2019-03-06 10.1097/MNH.0000000000000498 view
Miyoshi Dev. Dyn. Kidney Organoids in Translational Medicine: Disease Modeling and Regenerative Medicine. 2019-03-06 10.1002/dvdy.22 view
Cheng Cell Rep Single-Cell RNA-Seq Reveals Cellular Heterogeneity of Pluripotency Transition and X Chromosome Dynamics during Early Mouse Development. 2019-03-05 10.1016/j.celrep.2019.02.031 view
Kwon iScience Functional Heterogeneity of Mouse Prostate Stromal Cells Revealed by Single-Cell RNA-Seq. 2019-03-02 10.1016/j.isci.2019.02.032 view
See Front Immunol Corrigendum: A Single-Cell Sequencing Guide for Immunologists. 2019-03-01 10.3389/fimmu.2019.00278 view
Untereiner FASEB J. GABA promotes β-cell proliferation, but does not overcome impaired glucose homeostasis associated with diet-induced obesity. 2019-03-01 10.1096/fj.201801397R view
Yu FASEB J. Data driven mathematical modeling reveals the dynamic mechanism of MSC-induced neovascularization. 2019-03-01 10.1096/fj.201801652R view
Goldman Front Genet The Impact of Heterogeneity on Single-Cell Sequencing. 2019-03-01 10.3389/fgene.2019.00008 view
Okawa Nucleic Acids Res. A general computational approach to predicting synergistic transcriptional cores that determine cell subpopulation identities. 2019-03-01 10.1093/nar/gkz147 view
Ding Nucleic Acids Res. Cell lineage inference from SNP and scRNA-Seq data. 2019-03-01 10.1093/nar/gkz146 view
Marques Methods Mol. Biol. Single-Cell RNA Sequencing of Oligodendrocyte Lineage Cells from the Mouse Central Nervous System. 2019-03-01 10.1007/978-1-4939-9072-6_1 view
Zheng Bioinformatics SinNLRR: a robust subspace clustering method for cell type detection by nonnegative and low rank representation. 2019-03-01 10.1093/bioinformatics/btz139 view
Urrutia Bioinformatics Destin: toolkit for single-cell analysis of chromatin accessibility. 2019-03-01 10.1093/bioinformatics/btz141 view
Vickman Mol. Cancer Res. Cholesterol Sulfotransferase SULT2B1b Modulates Sensitivity to Death Receptor Ligand TNF alpha in Castration Resistant Prostate Cancer. 2019-03-01 10.1158/1541-7786.MCR-18-1054 view
Liao Development Revealing cellular and molecular transitions in neonatal germ cell differentiation using Single-cell RNA sequencing. 2019-03-01 10.1242/dev.174953 view
Long Cell Death Differ. Therapeutic resistance and susceptibility is shaped by cooperative multi-compartment tumor adaptation. 2019-03-01 10.1038/s41418-019-0310-0 view
Cardozo Front Genet webCEMiTool: Co-expression Modular Analysis Made Easy. 2019-03-01 10.3389/fgene.2019.00146 view
Theorell PLoS ONE Determination of essential phenotypic elements of clusters in high-dimensional entities-DEPECHE. 2019-03-01 10.1371/journal.pone.0203247 view
Maj Front Mol Neurosci 20 Years of Secretagogin: Exocytosis and Beyond. 2019-03-01 10.3389/fnmol.2019.00029 view
Sarma Lab Chip A diffusion-based microfluidic device for single-cell RNA-seq. 2019-02-28 10.1039/c8lc00967h view
Damiani PLoS Comput. Biol. Integration of single-cell RNA-seq data into population models to characterize cancer metabolism. 2019-02-28 10.1371/journal.pcbi.1006733 view
Zheng Proc. Natl. Acad. Sci. U.S.A. COX-2 mediates tumor-stromal prolactin signaling to initiate tumorigenesis. 2019-02-28 10.1073/pnas.1819303116 view
Arendt Curr. Opin. Neurobiol. Evolution of neuronal types and families. 2019-02-28 10.1016/j.conb.2019.01.022 view
Apóstolo Curr. Opin. Neurobiol. Compartmentalized distributions of neuronal and glial cell-surface proteins pattern the synaptic network. 2019-02-28 10.1016/j.conb.2019.01.025 view
Bakouny Eur Urol Focus State of the Future: Translational Approaches in Renal Cell Carcinoma in the Immunotherapy Era. 2019-02-28 10.1016/j.euf.2019.02.014 view
Ye RNA Biol Role of alternative polyadenylation dynamics in acute myeloid leukemia at single-cell resolution. 2019-02-27 10.1080/15476286.2019.1586139 view
Angelidis Nat Commun An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics. 2019-02-27 10.1038/s41467-019-08831-9 view
Liu Sci Data Single-cell RNA-seq of cultured human adipose-derived mesenchymal stem cells. 2019-02-26 10.1038/sdata.2019.31 view
Yuan FASEB J. Conserved pathway activation following xenogeneic, heterotypic fusion. 2019-02-26 10.1096/fj.201801700R view
O'Koren Immunity Microglial Function Is Distinct in Different Anatomical Locations during Retinal Homeostasis and Degeneration. 2019-02-26 10.1016/j.immuni.2019.02.007 view
Xie Nucleic Acids Res. SuperCT: a supervised-learning framework for enhanced characterization of single-cell transcriptomic profiles. 2019-02-25 10.1093/nar/gkz116 view
Bai Genomics Screen technical noise in single cell RNA sequencing data. 2019-02-22 10.1016/j.ygeno.2019.02.014 view
Kalamakis Cell Quiescence Modulates Stem Cell Maintenance and Regenerative Capacity in the Aging Brain. 2019-02-22 10.1016/j.cell.2019.01.040 view
van Galen Cell Single-Cell RNA-Seq Reveals AML Hierarchies Relevant to Disease Progression and Immunity. 2019-02-22 10.1016/j.cell.2019.01.031 view
Kurotaki Blood Epigenetic control of early dendritic cell lineage specification by the transcription factor IRF8 in mice. 2019-02-22 10.1182/blood-2018-06-857789 view
Levitin Mol. Syst. Biol. De novo gene signature identification from single-cell RNA-seq with hierarchical Poisson factorization. 2019-02-22 10.15252/msb.20188557 view
Chen Cell. Mol. Immunol. Revolutionizing immunology with single-cell RNA sequencing. 2019-02-22 10.1038/s41423-019-0214-4 view
Ma JCI Insight Single-cell RNA sequencing of lung adenocarcinoma reveals heterogeneity of immune response-related genes. 2019-02-21 10.1172/jci.insight.121387 view
Lin JCI Insight Single-cell analysis of fate-mapped macrophages reveals heterogeneity, including stem-like properties, during atherosclerosis progression and regression. 2019-02-21 10.1172/jci.insight.124574 view
Huang Curr. Opin. Nephrol. Hypertens. The kidney transcriptome, from single cells to whole organs and back. 2019-02-21 10.1097/MNH.0000000000000495 view
Hochane PLoS Biol. Single-cell transcriptomics reveals gene expression dynamics of human fetal kidney development. 2019-02-21 10.1371/journal.pbio.3000152 view
Jadhav Cell Dissecting Cell Lineages: From Microscope to Kaleidoscope. 2019-02-21 10.1016/j.cell.2019.01.054 view
Moussa J. Comput. Biol. Locality Sensitive Imputation for Single Cell RNA-Seq Data. 2019-02-20 10.1089/cmb.2018.0236 view
Peng PLoS Comput. Biol. A component overlapping attribute clustering (COAC) algorithm for single-cell RNA sequencing data analysis and potential pathobiological implications. 2019-02-19 10.1371/journal.pcbi.1006772 view
Frank Proc. Natl. Acad. Sci. U.S.A. Early lineage specification defines alveolar epithelial ontogeny in the murine lung. 2019-02-19 10.1073/pnas.1813952116 view
Mentis Cell. Mol. Life Sci. Helicobacter pylori infection and gastric cancer biology: tempering a double-edged sword. 2019-02-19 10.1007/s00018-019-03044-1 view
Schultze Immunity Emerging Principles in Myelopoiesis at Homeostasis and during Infection and Inflammation. 2019-02-19 10.1016/j.immuni.2019.01.019 view
Arranz Lancet Neurol The role of astroglia in Alzheimer's disease: pathophysiology and clinical implications. 2019-02-19 10.1016/S1474-4422(18)30490-3 view
Li Dev. Cell Rate of Progression through a Continuum of Transit-Amplifying Progenitor Cell States Regulates Blood Cell Production. 2019-02-18 10.1016/j.devcel.2019.01.026 view
Wang Pediatr. Res. A novel in vitro model of primary human pediatric lung epithelial cells. 2019-02-18 10.1038/s41390-019-0340-9 view
Rashid Bioinformatics Dhaka: Variational Autoencoder for Unmasking Tumor Heterogeneity from Single Cell Genomic Data. 2019-02-15 10.1093/bioinformatics/btz095 1 view
Xiang Cell Stem Cell hESC-Derived Thalamic Organoids Form Reciprocal Projections When Fused with Cortical Organoids. 2019-02-14 10.1016/j.stem.2018.12.015 view
Nowinski Environ. Microbiol. Microdiversity and Temporal Dynamics of Marine Bacterial Dimethylsulfoniopropionate Genes. 2019-02-14 10.1111/1462-2920.14560 view
Zhao Hepatology Tissue repair in the mouse liver following acute carbon tetrachloride depends on injury-induced Wnt/β-catenin signaling. 2019-02-14 10.1002/hep.30563 view
Monier PLoS Comput. Biol. IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis. 2019-02-14 10.1371/journal.pcbi.1006792 view
Haage Acta Neuropathol Commun Comprehensive gene expression meta-analysis identifies signature genes that distinguish microglia from peripheral monocytes/macrophages in health and glioma. 2019-02-14 10.1186/s40478-019-0665-y view
Dangi Cell. Mol. Immunol. Emerging approaches and technologies in transplantation: the potential game changers. 2019-02-13 10.1038/s41423-019-0207-3 view
Wu Mol. Cells Lineage Tracing: Computational Reconstruction Goes Beyond the Limit of Imaging. 2019-02-13 10.14348/molcells.2019.0006 view
Guo Mol. Cell Resolving Cell Fate Decisions during Somatic Cell Reprogramming by Single-Cell RNA-Seq. 2019-02-13 10.1016/j.molcel.2019.01.042 view
Cui Cell Rep Single-Cell Transcriptome Analysis Maps the Developmental Track of the Human Heart. 2019-02-12 10.1016/j.celrep.2019.01.079 view
Tyler Cell Rep PyMINEr Finds Gene and Autocrine-Paracrine Networks from Human Islet scRNA-Seq. 2019-02-12 10.1016/j.celrep.2019.01.063 view
Choi Mol. Cells Dissecting Cellular Heterogeneity Using Single-Cell RNA Sequencing. 2019-02-12 10.14348/molcells.2019.2446 view
Linderman Nat. Methods Fast interpolation-based t-SNE for improved visualization of single-cell RNA-seq data. 2019-02-11 10.1038/s41592-018-0308-4 view
Sato Genome Biol. CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing. 2019-02-11 10.1186/s13059-019-1639-x view
Kim Immunol. Cell Biol. Macrophages in wound healing: activation and plasticity. 2019-02-11 10.1111/imcb.12236 view
Rodriguez-Meira Mol. Cell Unravelling Intratumoral Heterogeneity through High-Sensitivity Single-Cell Mutational Analysis and Parallel RNA Sequencing. 2019-02-11 10.1016/j.molcel.2019.01.009 1 view
Guo Stem Cell Reports Single-Cell RNA Sequencing of Human Embryonic Stem Cell Differentiation Delineates Adverse Effects of Nicotine on Embryonic Development. 2019-02-11 10.1016/j.stemcr.2019.01.022 view
Yu EMBO J. Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution. 2019-02-08 10.15252/embj.2018100164 view
Guerrero-Juarez Nat Commun Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds. 2019-02-08 10.1038/s41467-018-08247-x view
Gutierrez-Arcelus Nat Commun Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions. 2019-02-08 10.1038/s41467-019-08604-4 view
Koelwyn Trends Immunol. Defining Macrophages in the Heart One Cell at a Time. 2019-02-08 10.1016/ view
Wizeman Elife Specification of diverse cell types during early neurogenesis of the mouse cerebellum. 2019-02-08 10.7554/eLife.42388 view
Carr Cell Stem Cell Mesenchymal Precursor Cells in Adult Nerves Contribute to Mammalian Tissue Repair and Regeneration. 2019-02-07 10.1016/j.stem.2018.10.024 1 view
Tan Cell Stem Cell Human Spermatogonial Stem Cells Scrutinized under the Single-Cell Magnifying Glass. 2019-02-07 10.1016/j.stem.2019.01.010 view
Mayer Neuron Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex. 2019-02-07 10.1016/j.neuron.2019.01.027 view
Watcham Blood New Insights into Haematopoietic Differentiation Landscapes from scRNA-seq. 2019-02-06 10.1182/blood-2018-08-835355 view
Szczerba Nature Neutrophils escort circulating tumour cells to enable cell cycle progression. 2019-02-06 10.1038/s41586-019-0915-y view
Schreurs Immunity Human Fetal TNF-α-Cytokine-Producing CD4+ Effector Memory T Cells Promote Intestinal Development and Mediate Inflammation Early in Life. 2019-02-05 10.1016/j.immuni.2018.12.010 view
Ekiz JCI Insight MicroRNA-155 coordinates the immunological landscape within murine melanoma and correlates with immunity in human cancers. 2019-02-05 10.1172/jci.insight.126543 view
Mould JCI Insight Single cell RNA sequencing identifies unique inflammatory airspace macrophage subsets. 2019-02-05 10.1172/jci.insight.126556 view
Sohni Cell Rep The Neonatal and Adult Human Testis Defined at the Single-Cell Level. 2019-02-05 10.1016/j.celrep.2019.01.045 view
Poczobutt Am. J. Respir. Crit. Care Med. Defining the Cell Types That Drive IPF Using Single Cell RNA Sequencing. 2019-02-04 10.1164/rccm.201901-0197ED view
Ryu Plant Physiol. Single-cell RNA sequencing resolves molecular relationships among individual plant cells. 2019-02-04 10.1104/pp.18.01482 view
Borcherding Clin. Cancer Res. Single-cell profiling of cutaneous T-cell lymphoma reveals underlying heterogeneity associated with disease progression. 2019-02-04 10.1158/1078-0432.CCR-18-3309 view
Risso Nat Commun Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data. 2019-02-04 10.1038/s41467-019-08614-2 view
Tiklová Nat Commun Single-cell RNA sequencing reveals midbrain dopamine neuron diversity emerging during mouse brain development. 2019-02-04 10.1038/s41467-019-08453-1 view
Saint Nat Microbiol Single-cell imaging and RNA sequencing reveal patterns of gene expression heterogeneity during fission yeast growth and adaptation. 2019-02-04 10.1038/s41564-018-0330-4 view
Nadal-Ribelles Nat Microbiol Sensitive high-throughput single-cell RNA-seq reveals within-clonal transcript correlations in yeast populations. 2019-02-04 10.1038/s41564-018-0346-9 view
Potter Methods Mol. Biol. Dissociation of Tissues for Single-Cell Analysis. 2019-02-01 10.1007/978-1-4939-9021-4_5 view
Brazovskaja Curr. Opin. Biotechnol. High-throughput single-cell transcriptomics on organoids. 2019-02-01 10.1016/j.copbio.2018.11.002 view
Jiang Methods Mol. Biol. Quality Control of Single-Cell RNA-seq. 2019-02-01 10.1007/978-1-4939-9057-3_1 view
Bacher Methods Mol. Biol. Normalization for Single-Cell RNA-Seq Data Analysis. 2019-02-01 10.1007/978-1-4939-9057-3_2 view
Kim Methods Mol. Biol. Analysis of Technical and Biological Variability in Single-Cell RNA Sequencing. 2019-02-01 10.1007/978-1-4939-9057-3_3 view
Shekhar Methods Mol. Biol. Identification of Cell Types from Single-Cell Transcriptomic Data. 2019-02-01 10.1007/978-1-4939-9057-3_4 view
Sun Methods Mol. Biol. scMCA: A Tool to Define Mouse Cell Types Based on Single-Cell Digital Expression. 2019-02-01 10.1007/978-1-4939-9057-3_6 view
Fan Methods Mol. Biol. Differential Pathway Analysis. 2019-02-01 10.1007/978-1-4939-9057-3_7 view
Ji Methods Mol. Biol. Pseudotime Reconstruction Using TSCAN. 2019-02-01 10.1007/978-1-4939-9057-3_8 view
Chen Methods Mol. Biol. Estimating Differentiation Potency of Single Cells Using Single-Cell Entropy (SCENT). 2019-02-01 10.1007/978-1-4939-9057-3_9 view
Lamere Methods Mol. Biol. Inference of Gene Co-expression Networks from Single-Cell RNA-Sequencing Data. 2019-02-01 10.1007/978-1-4939-9057-3_10 view
Dong Methods Mol. Biol. Single-Cell Allele-Specific Gene Expression Analysis. 2019-02-01 10.1007/978-1-4939-9057-3_11 view
Huang Methods Mol. Biol. Using BRIE to Detect and Analyze Splicing Isoforms in scRNA-Seq Data. 2019-02-01 10.1007/978-1-4939-9057-3_12 view
Lindeman Methods Mol. Biol. Antigen Receptor Sequence Reconstruction and Clonality Inference from scRNA-Seq Data. 2019-02-01 10.1007/978-1-4939-9057-3_15 view
Mongia Front Genet McImpute: Matrix Completion Based Imputation for Single Cell RNA-seq Data. 2019-02-01 10.3389/fgene.2019.00009 1 view
Winterhoff Curr. Opin. Obstet. Gynecol. Single-cell sequencing in ovarian cancer: a new frontier in precision medicine. 2019-02-01 10.1097/GCO.0000000000000516 view
Blecher-Gonen Cell Syst Single-Cell Analysis of Diverse Pathogen Responses Defines a Molecular Roadmap for Generating Antigen-Specific Immunity. 2019-02-01 10.1016/j.cels.2019.01.001 view
Papadopoulos Bioinformatics PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processes. 2019-02-01 10.1093/bioinformatics/btz078 view
Yu Methods Mol. Biol. Usage of Single-Cell RNA Sequencing to Unveil Immune Lymphoid Cell Precursors. 2019-02-01 10.1007/978-1-4939-8885-3_5 view
Wardemann Methods Mol. Biol. Expression Cloning of Antibodies from Single Human B Cells. 2019-02-01 10.1007/978-1-4939-9151-8_5 view
Bagnoli Methods Mol. Biol. Studying Cancer Heterogeneity by Single-Cell RNA Sequencing. 2019-02-01 10.1007/978-1-4939-9151-8_14 view
Zhou Stem Cells Int Stem Cells and Cellular Origins of Mammary Gland: Updates in Rationale, Controversies, and Cancer Relevance. 2019-02-01 10.1155/2019/4247168 view
Penaranda ACS Infect Dis Single-Cell RNA Sequencing to Understand Host-Pathogen Interactions. 2019-01-31 10.1021/acsinfecdis.8b00369 view
Stuart Nat. Rev. Genet. Integrative single-cell analysis. 2019-01-29 10.1038/s41576-019-0093-7 view
Zhu Genes (Basel) A Hybrid Clustering Algorithm for Identifying Cell Types from Single-Cell RNA-Seq Data. 2019-01-29 10.3390/genes10020098 view
Rosenzweig Nat Commun PD-1/PD-L1 checkpoint blockade harnesses monocyte-derived macrophages to combat cognitive impairment in a tauopathy mouse model. 2019-01-28 10.1038/s41467-019-08352-5 view
Schiebinger Cell Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming. 2019-01-28 10.1016/j.cell.2019.01.006 view
Peng Cell Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina. 2019-01-28 10.1016/j.cell.2019.01.004 view
Lush Elife scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling. 2019-01-25 10.7554/eLife.44431 view
Collin Stem Cells CRX expression in pluripotent stem cell derived photoreceptors marks a transplantable subpopulation of early cones. 2019-01-25 10.1002/stem.2974 view
Daughtry Genome Res. Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion. 2019-01-25 10.1101/gr.239830.118 view
Lawlor Elife Nephron progenitor commitment is a stochastic process influenced by cell migration. 2019-01-24 10.7554/eLife.41156 view
Williams Curr. Opin. Neurobiol. Neuronal cell types in the annelid Platynereis dumerilii. 2019-01-24 10.1016/j.conb.2018.12.008 view
Maehara Int J Oral Maxillofac Surg Clinical features and mechanistic insights regarding IgG4-related dacryoadenitis and sialoadenitis: a review. 2019-01-24 10.1016/j.ijom.2019.01.006 view
Sahara Dev. Cell Population and Single-Cell Analysis of Human Cardiogenesis Reveals Unique LGR5 Ventricular Progenitors in Embryonic Outflow Tract. 2019-01-24 10.1016/j.devcel.2019.01.005 view
Ba Funct. Integr. Genomics Single-cell transcriptome provides novel insights into antler stem cells, a cell type capable of mammalian organ regeneration. 2019-01-23 10.1007/s10142-019-00659-2 view
Hamza Proc. Natl. Acad. Sci. U.S.A. Optofluidic real-time cell sorter for longitudinal CTC studies in mouse models of cancer. 2019-01-23 10.1073/pnas.1814102116 view
Eraslan Nat Commun Single-cell RNA-seq denoising using a deep count autoencoder. 2019-01-23 10.1038/s41467-018-07931-2 view
Miragaia Immunity Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation. 2019-01-23 10.1016/j.immuni.2019.01.001 2 view
Messmer Cell Rep Transcriptional Heterogeneity in Naive and Primed Human Pluripotent Stem Cells at Single-Cell Resolution. 2019-01-22 10.1016/j.celrep.2018.12.099 view
Darde Bioinformatics The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community. 2019-01-22 10.1093/bioinformatics/btz047 view
Huss Hum. Hered. Comparison of SureSelect and Nextera Exome Capture Performance in Single-Cell Sequencing. 2019-01-22 10.1159/000490506 view
Yang BMC Syst Biol Correction to: MISC: missing imputation for single-cell RNA sequencing data. 2019-01-22 10.1186/s12918-019-0681-3 view
Wang Nat Commun Bulk tissue cell type deconvolution with multi-subject single-cell expression reference. 2019-01-22 10.1038/s41467-018-08023-x view
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