Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Clara cells are dome-shaped cells with short microvilli, found in the small airways (bronchioles) of the lungs. These cells may secrete glycosaminoglycans to protect the bronchiole lining.
Synonym(s): Bronchiolar exocrine cells, Club cells

Gene expression markers for Clara cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
8
Mm Hs SCGB1A1 0.028 1 0 0.01 0 4 Clara cells Endoderm Lungs CC10,CCSP,CC16,UGB secretoglobin family 1A member 1 Yflag
1
Mm Hs CYP4B1 0.018 0.667 0.66 0.012 0.017 3 Clara cells Endoderm Lungs cytochrome P450 family 4 subfamily B member 1 flag
1
Mm Hs SFTPA1 0.015 0.667 0 0.017 0 3 Clara cells Endoderm Lungs SP-A,SP-A1,COLEC4,SFTP1 surfactant protein A1 Yflag
1
Mm Hs ERN1 0.002 0 0 0.006 0.001 2 Clara cells Endoderm Lungs IRE1,IRE1P endoplasmic reticulum to nucleus signaling 1 flag
1
Mm Hs LEPR 0.005 0 0 0.008 0.004 3 Clara cells Endoderm Lungs OBR,CD295 leptin receptor Yflag
1
Mm Hs MMP28 0 0 0 0.002 0 1 Clara cells Endoderm Lungs MMP-25,MM28,EPILYSIN,MMP-28 matrix metallopeptidase 28 flag
1
Mm Hs AHR 0.007 0 0.064 0.011 0.007 8 Clara cells Endoderm Lungs bHLHe76 aryl hydrocarbon receptor flag
1
Mm Hs MUC4 0.005 0 0 0.017 0.003 3 Clara cells Endoderm Lungs mucin 4, cell surface associated flag
1
Mm Hs SCGB3A1 0.006 0.667 0 0.011 0 3 Clara cells Endoderm Lungs UGRP2,HIN-1,HIN1,LU105,PnSP-2 secretoglobin family 3A member 1 flag
1
Mm Hs ALDH1A1 0.039 0 0.851 0.088 0.026 5 Clara cells Endoderm Lungs RALDH1,PUMB1,ALDH1 aldehyde dehydrogenase 1 family member A1 flag
1
Mm Hs MUC1 0.016 0.667 0.34 0.032 0.012 8 Clara cells Endoderm Lungs CD227,PEM,ADMCKD,ADMCKD1,MCKD,MCKD1 mucin 1, cell surface associated Yflag
1
Mm Hs SFTPC 0.029 1 0 0.022 0 2 Clara cells Endoderm Lungs SP-C,PSP-C,SMDP2,BRICD6,SFTP2 surfactant protein C Yflag
1
Mm Hs SCGB3A2 0.008 1 0 0.008 0 1 Clara cells Endoderm Lungs UGRP1,LU103,PNSP1 secretoglobin family 3A member 2 Yflag
1
Mm Hs MUC5B 0.002 0 0.128 0.009 0 4 Clara cells Endoderm Lungs MG1 mucin 5B, oligomeric mucus/gel-forming Yflag
1
Mm Hs CTSE 0.009 0 0 0.009 0.009 2 Clara cells Endoderm Lungs cathepsin E flag
1
Mm Hs CYP2E1 0.003 0 0 0.004 0.003 3 Clara cells Endoderm Lungs CYP2E cytochrome P450 family 2 subfamily E member 1 flag
0
Mm Hs SFTPD 0.01 0.333 0 0.004 0 2 Clara cells Endoderm Lungs SP-D,COLEC7,SFTP4 surfactant protein D flag
0
Mm CYP2B10 0.004 0 0.021 0 0.005 2 Clara cells Endoderm Lungs cytochrome P450, family 2, subfamily b, polypeptide 10 flag
0
Mm Hs RAB3D 0.015 0 0 0 0 2 Clara cells Endoderm Lungs RAB16,D2-2,RAD3D,GOV RAB3D, member RAS oncogene family flag
0
Mm Hs SYT2 0.002 0 0 0 0 2 Clara cells Endoderm Lungs synaptotagmin 2 Yflag
0
Mm Hs CARM1 0 0 0 0 0 1 Clara cells Endoderm Lungs PRMT4 coactivator associated arginine methyltransferase 1 flag
0
Mm Hs BPIFA1 0.006 0 0.319 0.004 0.006 1 Clara cells Endoderm Lungs LUNX,bA49G10.5,SPLUNC1,PLUNC BPI fold containing family A member 1 flag
0
Mm CYP2F2 0.008 0 0.872 0 0.007 3 Clara cells Endoderm Lungs cytochrome P450, family 2, subfamily f, polypeptide 2 flag
0
Mm Hs FOXM1 0.001 0 0 0 0.002 2 Clara cells Endoderm Lungs HFH-11,trident,HNF-3,INS-1,MPP2,MPHOSPH2,TGT3,FKHL16 forkhead box M1 flag

Datasets with computationally identified Clara cells

SRA SRS tissue cluster cell type p-value FDR View
SRA832392 SRS4237528 Lung 4 Clara cells 1.92E-10 5.35E-8 view data
SRA653146 SRS3044263 Trachea 7 Clara cells 1.34E-5 2.51E-3 view data
SRA653146 SRS2874276 Lung 22 Clara cells 3.39E-6 2.56E-4 view data
SRA832392 SRS4237518 Lung 2 Clara cells 1.05E-11 2.28E-9 view data
SRA832392 SRS4237522 Lung 0 Clara cells 4.49E-10 6.14E-8 view data
SRA832392 SRS4237522 Lung 3 Clara cells 3.87E-15 6.62E-13 view data
SRA868228 SRS4567381 Lung 3 Clara cells 8.24E-12 1.75E-9 view data
SRA868228 SRS4567381 Lung 6 Clara cells 3.12E-12 7.16E-10 view data
SRA638923 SRS2797073 Lung 8 Clara cells 4.29E-9 1.24E-6 view data
SRA653146 SRS2874273 Heart 25 Clara cells 5.97E-6 5.22E-4 view data
SRA878024 SRS4660847 Lungs 3 Clara cells 3.00E-6 1.27E-3 view data
SRA832392 SRS4237531 Lung 1 Clara cells 5.35E-10 9.20E-8 view data
SRA832392 SRS4237531 Lung 4 Clara cells 1.66E-14 4.76E-12 view data
SRA665588 SRS3034030 Lung 8 Clara cells 8.13E-7 2.44E-4 view data
SRA878024 SRS4660848 Lungs 0 Clara cells 1.69E-7 2.95E-5 view data
SRA862468 SRS4512241 Lung 16 Clara cells 6.32E-7 6.91E-5 view data
SRA862468 SRS4512237 Lung 15 Clara cells 2.58E-8 3.55E-6 view data
SRA868228 SRS4567382 Lung 0 Clara cells 3.09E-10 7.96E-8 view data
SRA868228 SRS4567382 Lung 10 Clara cells 6.09E-10 1.33E-7 view data
SRA832392 SRS4237526 Lung 2 Clara cells 4.50E-10 1.57E-7 view data
SRA653146 SRS3044262 Trachea 9 Clara cells 3.17E-7 6.88E-5 view data
SRA653146 SRS3044262 Trachea 15 Clara cells 2.16E-12 1.54E-9 view data
SRA832392 SRS4237520 Lung 0 Clara cells 4.67E-8 1.19E-5 view data
SRA832392 SRS4237525 Lung 9 Clara cells 1.37E-11 5.98E-9 view data
SRA862468 SRS4512238 Lung 17 Clara cells 2.71E-6 2.56E-4 view data
SRA832392 SRS4237527 Lung 2 Clara cells 5.54E-14 1.35E-11 view data
SRA832392 SRS4237527 Lung 3 Clara cells 3.37E-10 6.84E-8 view data
SRA832392 SRS4237527 Lung 4 Clara cells 5.39E-6 5.97E-4 view data
SRA832392 SRS4237527 Lung 5 Clara cells 2.56E-14 7.80E-12 view data
SRA832392 SRS4237527 Lung 6 Clara cells 1.37E-5 1.28E-3 view data
SRA832392 SRS4237519 Lung 0 Clara cells 2.65E-5 2.90E-3 view data
SRA832392 SRS4237519 Lung 3 Clara cells 8.62E-9 1.67E-6 view data
SRA665588 SRS3034031 Lung 5 Clara cells 6.05E-7 2.41E-4 view data
SRA688150 SRS3161261 Lung 4 Clara cells 4.19E-14 7.16E-12 view data
SRA665153 SRS3030317 Epithelial cells in airway luminal surface 1 Clara cells 1.64E-7 7.12E-5 view data
SRA692557 SRS4245406 Lung endoderm 18 Clara cells 5.82E-6 1.29E-3 view data
SRA665588 SRS3034033 Lung 5 Clara cells 1.27E-7 6.54E-5 view data
SRA832392 SRS4237523 Lung 5 Clara cells 1.46E-10 4.74E-8 view data
SRA832392 SRS4237521 Lung 2 Clara cells 1.43E-10 4.94E-8 view data
SRA638923 SRS2797072 Lung 5 Clara cells 1.71E-8 5.18E-6 view data
SRA638923 SRS2797079 Lung 1 Clara cells 2.17E-4 3.06E-2 view data
SRA638923 SRS2797079 Lung 2 Clara cells 3.15E-4 3.25E-2 view data
SRA638923 SRS2797079 Lung 5 Clara cells 5.15E-11 1.99E-8 view data
SRA638923 SRS2797079 Lung 6 Clara cells 3.95E-4 3.82E-2 view data
SRA638923 SRS2797079 Lung 8 Clara cells 2.61E-4 3.16E-2 view data
SRA832392 SRS4237529 Lung 6 Clara cells 2.34E-11 8.14E-9 view data
SRA862468 SRS4512242 Lung 18 Clara cells 4.43E-5 4.38E-3 view data
SRA631205 SRS2690036 Pulmonary alveolar type i cells 7 Clara cells 5.44E-5 6.60E-3 view data
SRA878024 SRS4660846 Lungs 3 Clara cells 8.93E-7 1.76E-4 view data
SRA832392 SRS4237530 Lung 5 Clara cells 5.77E-11 1.99E-8 view data