Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Have several subtypes: K, L, I, G, Enterochromaffin, Enterochromaffin-like, N, S, D, Mo

Gene expression markers for Enteroendocrine cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
7
Mm Hs CHGA 0.057 0.632 0.788 0.034 0.061 6 Enteroendocrine cells Endoderm GI tract chromogranin A flag
1
Mm Hs GFRA3 0.005 0 0.182 0.003 0.005 4 Enteroendocrine cells Endoderm GI tract GFRa-3 GDNF family receptor alpha 3 flag
0
Mm Hs ENPP2 0.08 0 0.03 0.033 0.091 2 Enteroendocrine cells Endoderm GI tract PD-IALPHA,PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 flag
0
Mm Hs SST 0.027 1 0 0.042 0 5 Enteroendocrine cells Endoderm GI tract SMST somatostatin flag
0
Hs MLN 0 0 0 0 0 1 Enteroendocrine cells Endoderm GI tract motilin flag
0
Mm Hs GPR119 0 0 0.061 0 0 2 Enteroendocrine cells Endoderm GI tract hGPCR2,GPCR2 G protein-coupled receptor 119 flag
0
Mm Hs GCG 0.024 1 0.848 0.046 0.018 2 Enteroendocrine cells Endoderm GI tract GLP2,GRPP glucagon flag
0
Mm Hs CHGB 0.076 0.632 0.485 0.041 0.085 1 Enteroendocrine cells Endoderm GI tract SgI,SCG1 chromogranin B flag
0
Mm Hs CPE 0.317 0.632 0.758 0.13 0.365 1 Enteroendocrine cells Endoderm GI tract carboxypeptidase E flag
0
Mm Hs GAL 0.014 0 0 0.019 0.011 6 Enteroendocrine cells Endoderm GI tract GMAP,GAL-GMAP,GLNN,GALN galanin and GMAP prepropeptide Yflag
0
Mm Hs NUCB2 0.066 0.053 0.121 0.245 0.024 2 Enteroendocrine cells Endoderm GI tract NEFA nucleobindin 2 flag
0
Mm Hs IAPP 0.023 0.947 0.848 0.037 0.019 3 Enteroendocrine cells Endoderm GI tract AMYLIN islet amyloid polypeptide flag
0
Mm Hs GHRL 0.003 0 0.182 0.001 0.003 2 Enteroendocrine cells Endoderm GI tract MTLRP,ghrelin,obestatin ghrelin and obestatin prepropeptide Yflag
0
Mm Hs TRPA1 0.001 0 0 0.003 0 2 Enteroendocrine cells Endoderm GI tract ANKTM1 transient receptor potential cation channel subfamily A member 1 Yflag
0
Mm Hs NTS 0.005 0 0 0.006 0.005 1 Enteroendocrine cells Endoderm GI tract neurotensin flag
0
Mm Hs AFP 0.007 0 0 0.011 0.005 4 Enteroendocrine cells Endoderm GI tract FETA,HPAFP alpha fetoprotein Yflag
0
Mm Hs VEGFA 0.021 0 0 0.025 0 10 Enteroendocrine cells Endoderm GI tract VEGF-A,VPF,VEGF vascular endothelial growth factor A Yflag
0
Mm Hs FFAR4 0.005 0.053 0.182 0.004 0.005 2 Enteroendocrine cells Endoderm GI tract PGR4,GPR129,GPR120,O3FAR1 free fatty acid receptor 4 Yflag
0
Mm Hs MC4R 0 0 0 0 0 1 Enteroendocrine cells Endoderm GI tract melanocortin 4 receptor Yflag
0
Mm Hs INSL5 0 0 0.03 0 0 1 Enteroendocrine cells Endoderm GI tract insulin like 5 flag
0
Mm Hs SSTR2 0.028 0 0 0.012 0 3 Enteroendocrine cells Endoderm GI tract somatostatin receptor 2 flag
0
Mm Hs ALCAM 0 0 0.364 0.055 0.085 3 Enteroendocrine cells Endoderm GI tract CD166,MEMD activated leukocyte cell adhesion molecule flag
0
Mm Hs TAS1R2 0 0 0 0 0 2 Enteroendocrine cells Endoderm GI tract T1R2,GPR71 taste 1 receptor member 2 flag
0
Mm Hs TAS1R3 0 0 0 0 0 4 Enteroendocrine cells Endoderm GI tract T1R3 taste 1 receptor member 3 flag
0
Mm Hs GNAT3 0 0 0 0 0 3 Enteroendocrine cells Endoderm GI tract gustducin,GDCA G protein subunit alpha transducin 3 flag
0
Mm Hs PCSK1 0.008 0 0.242 0.009 0.008 5 Enteroendocrine cells Endoderm GI tract PC1,NEC1 proprotein convertase subtilisin/kexin type 1 Yflag
0
Mm Hs FFAR3 0 0 0 0 0.001 3 Enteroendocrine cells Endoderm GI tract FFA3R,GPR41 free fatty acid receptor 3 flag
0
Mm Hs SCN3A 0.022 0 0 0.006 0 2 Enteroendocrine cells Endoderm GI tract Nav1.3 sodium voltage-gated channel alpha subunit 3 flag
0
Mm Hs NEUROG3 0.001 0 0.03 0.001 0.001 2 Enteroendocrine cells Endoderm GI tract Atoh5,Math4B,ngn3,bHLHa7 neurogenin 3 Yflag
0
Mm Hs FFAR1 0.002 0 0.03 0.007 0.001 2 Enteroendocrine cells Endoderm GI tract FFA1R,GPR40 free fatty acid receptor 1 flag
0
Mm Hs ARX 0.019 0 0.121 0.002 0.023 7 Enteroendocrine cells Endoderm GI tract ISSX,CT121,EIEE1,MRXS1,PRTS,MRX76,MRX54,MRX43,MRX36,MRX29,MRX32,MRX33,MRX38,MRX87 aristaless related homeobox Yflag
0
Mm Hs NKX2-2 0.002 0 0.03 0.01 0.001 6 Enteroendocrine cells Endoderm GI tract NKX2.2,NKX2B NK2 homeobox 2 flag
0
Mm Hs SCT 0.011 0 0 0.012 0 2 Enteroendocrine cells Endoderm GI tract secretin flag
0
Mm Hs CCK 0.033 0 0.152 0.003 0.038 7 Enteroendocrine cells Endoderm GI tract cholecystokinin flag
0
Mm Hs VWA5B2 0.001 0 0 0.002 0 1 Enteroendocrine cells Endoderm GI tract DKFZp761K032,LOC90113 von Willebrand factor A domain containing 5B2 flag
0
Mm Hs NEUROD1 0.038 0.211 0.364 0.022 0.042 8 Enteroendocrine cells Endoderm GI tract BETA2,BHF-1,NeuroD,bHLHa3,MODY6,NEUROD neuronal differentiation 1 Yflag
0
Mm Hs SCGN 0.014 0.632 0 0.026 0 6 Enteroendocrine cells Endoderm GI tract SECRET,DJ501N12.8,SEGN,CALBL secretagogin, EF-hand calcium binding protein flag
0
Mm Hs NPSR1 0 0 0 0 0 1 Enteroendocrine cells Endoderm GI tract PGR14,GPRA,GPR154 neuropeptide S receptor 1 Yflag
0
Mm Hs ISL1 0.028 0.105 0.424 0.013 0.031 13 Enteroendocrine cells Endoderm GI tract Isl-1,ISLET1 ISL LIM homeobox 1 flag
0
Mm Hs FABP5 0.354 0 0.152 0.22 0.39 2 Enteroendocrine cells Endoderm GI tract E-FABP,PA-FABP,KFABP fatty acid binding protein 5 flag
0
Mm Hs TAC1 0.01 0 0 0.005 0 6 Enteroendocrine cells Endoderm GI tract NPK,TAC2,NKNA tachykinin precursor 1 flag
0
Mm Hs RIMBP2 0.005 0 0 0 0 1 Enteroendocrine cells Endoderm GI tract KIAA0318,RBP2,MGC15831,RIM-BP2,PPP1R133 RIMS binding protein 2 flag
0
Mm Hs PAX6 0.049 0 0.424 0.014 0.058 8 Enteroendocrine cells Endoderm GI tract D11S812E,AN2 paired box 6 Yflag
0
Mm Hs GIP 0.007 0 0.061 0 0.009 1 Enteroendocrine cells Endoderm GI tract gastric inhibitory polypeptide flag
0
Mm Hs GLP1R 0 0 0 0 0 2 Enteroendocrine cells Endoderm GI tract GLP-1R glucagon like peptide 1 receptor flag
0
Mm Hs PYY 0.016 0 0.939 0.001 0.018 2 Enteroendocrine cells Endoderm GI tract PYY1 peptide YY flag
0
Mm Hs GLP2R 0 0 0 0 0 1 Enteroendocrine cells Endoderm GI tract glucagon like peptide 2 receptor flag
0
Mm Hs GAST 0.001 0 0.03 0.001 0.001 1 Enteroendocrine cells Endoderm GI tract gastrin flag

Datasets with computationally identified Enteroendocrine cells

SRA SRS tissue cluster cell type p-value FDR View
SRA701877 SRS3279684 Pancreatic islets 5 Enteroendocrine cells 3.83E-4 3.63E-2 view data
SRA701877 SRS3279694 Pancreatic islets 4 Enteroendocrine cells 5.04E-6 1.18E-3 view data
SRA701877 SRS3279694 Pancreatic islets 5 Enteroendocrine cells 1.02E-4 1.13E-2 view data
SRA628138 SRS2659226 Intestinal organoid epithelial cells 9 Enteroendocrine cells 6.06E-7 8.99E-5 view data
SRA701877 SRS3279692 Pancreatic islets 7 Enteroendocrine cells 2.58E-4 2.37E-2 view data
SRA701877 SRS3279692 Pancreatic islets 10 Enteroendocrine cells 9.52E-6 1.44E-3 view data
SRA701877 SRS3279685 Pancreatic islets 2 Enteroendocrine cells 8.09E-5 1.07E-2 view data
SRA701877 SRS3279685 Pancreatic islets 3 Enteroendocrine cells 2.34E-4 2.47E-2 view data
SRA745567 SRS3600294 Pancreatic islets 2 Enteroendocrine cells 1.36E-5 3.82E-3 view data
SRA745567 SRS3600294 Pancreatic islets 6 Enteroendocrine cells 1.52E-6 5.13E-4 view data
SRA745567 SRS3600294 Pancreatic islets 13 Enteroendocrine cells 4.31E-4 4.14E-2 view data
SRA745567 SRS3600294 Pancreatic islets 14 Enteroendocrine cells 6.74E-7 2.52E-4 view data
SRA745567 SRS3600297 Pancreatic islets 6 Enteroendocrine cells 3.16E-5 3.83E-3 view data
SRA745567 SRS3600297 Pancreatic islets 17 Enteroendocrine cells 2.32E-7 6.68E-5 view data
SRA745567 SRS3600297 Pancreatic islets 20 Enteroendocrine cells 7.28E-4 4.72E-2 view data
SRA701877 SRS3279686 Pancreatic islets 7 Enteroendocrine cells 3.63E-4 2.98E-2 view data
SRA745567 SRS3600295 Pancreatic islets 3 Enteroendocrine cells 4.45E-4 4.16E-2 view data
SRA745567 SRS3600295 Pancreatic islets 4 Enteroendocrine cells 9.38E-6 1.85E-3 view data
SRA745567 SRS3600295 Pancreatic islets 11 Enteroendocrine cells 9.08E-5 1.17E-2 view data
SRA745567 SRS3600295 Pancreatic islets 16 Enteroendocrine cells 4.13E-7 1.54E-4 view data
SRA701877 SRS3279691 Pancreatic islets 7 Enteroendocrine cells 6.01E-6 8.14E-4 view data
SRA784304 SRS3823099 Pancreatic progenitor cells 4 Enteroendocrine cells 1.63E-5 3.69E-3 view data
SRA745567 SRS3600299 Pancreatic islets 1 Enteroendocrine cells 1.34E-5 1.02E-3 view data
SRA745567 SRS3600301 Pancreatic islets 23 Enteroendocrine cells 3.83E-5 2.38E-3 view data
SRA784304 SRS3823097 Pancreatic progenitor cells 4 Enteroendocrine cells 1.05E-6 9.72E-5 view data
SRA784304 SRS3823097 Pancreatic progenitor cells 6 Enteroendocrine cells 4.49E-7 4.66E-5 view data
SRA784304 SRS3823097 Pancreatic progenitor cells 12 Enteroendocrine cells 6.52E-8 9.95E-6 view data
SRA628138 SRS2659249 Intestinal organoid epithelial cells 8 Enteroendocrine cells 4.30E-4 3.56E-2 view data
SRA745567 SRS3600298 Pancreatic islets 1 Enteroendocrine cells 2.64E-4 2.25E-2 view data
SRA745567 SRS3600298 Pancreatic islets 9 Enteroendocrine cells 2.75E-5 4.08E-3 view data
SRA745567 SRS3600298 Pancreatic islets 10 Enteroendocrine cells 9.76E-6 1.73E-3 view data
SRA745567 SRS3600298 Pancreatic islets 15 Enteroendocrine cells 2.93E-7 9.63E-5 view data
SRA784304 SRS3823096 Pancreatic progenitor cells 6 Enteroendocrine cells 3.47E-8 1.02E-5 view data
SRA638923 SRS2797103 Pancreas 7 Enteroendocrine cells 3.04E-6 5.29E-4 view data
SRA745567 SRS3600296 Pancreatic islets 10 Enteroendocrine cells 1.76E-5 4.85E-3 view data
SRA745567 SRS3600296 Pancreatic islets 15 Enteroendocrine cells 3.38E-7 1.40E-4 view data
SRA585365 SRS3297654 Pancreas 13 Enteroendocrine cells 1.57E-10 1.68E-7 view data
SRA653146 SRS2874272 Colon 18 Enteroendocrine cells 5.30E-4 1.76E-2 view data
SRA653146 SRS2874272 Colon 22 Enteroendocrine cells 1.11E-7 1.08E-5 view data
SRA745567 SRS3600293 Pancreatic islets 3 Enteroendocrine cells 1.59E-5 4.21E-3 view data
SRA745567 SRS3600293 Pancreatic islets 6 Enteroendocrine cells 1.87E-6 8.15E-4 view data
SRA745567 SRS3600293 Pancreatic islets 16 Enteroendocrine cells 1.63E-7 9.90E-5 view data
SRA701877 SRS3279689 Pancreatic islets 3 Enteroendocrine cells 1.84E-4 1.56E-2 view data
SRA701877 SRS3279689 Pancreatic islets 4 Enteroendocrine cells 7.41E-6 1.10E-3 view data
SRA701877 SRS3279695 Pancreatic islets 2 Enteroendocrine cells 8.08E-5 9.29E-3 view data
SRA701877 SRS3279695 Pancreatic islets 5 Enteroendocrine cells 2.68E-4 2.20E-2 view data
SRA701877 SRS3279695 Pancreatic islets 6 Enteroendocrine cells 1.78E-6 4.56E-4 view data
SRA701877 SRS3279695 Pancreatic islets 7 Enteroendocrine cells 1.11E-4 1.11E-2 view data
SRA701877 SRS3279690 Pancreatic islets 5 Enteroendocrine cells 7.10E-6 8.75E-4 view data
SRA701877 SRS3279690 Pancreatic islets 6 Enteroendocrine cells 5.09E-4 3.43E-2 view data
SRA701877 SRS3279690 Pancreatic islets 7 Enteroendocrine cells 4.38E-5 4.28E-3 view data
SRA701877 SRS3279693 Pancreatic islets 8 Enteroendocrine cells 9.93E-5 8.55E-3 view data