Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Foveolar cells or surface mucous cells are mucus-producing cells which cover the inside of the stomach, protecting it from the corrosive nature of gastric acid.

Gene expression markers for Foveolar cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
0
Mm SPRR2A1 0.007 NA NA NA NA 2 Foveolar cells Endoderm GI tract small proline-rich protein 2A1 flag
0
Mm Hs IL33 0.018 0 0.083 0.011 0.021 6 Foveolar cells Endoderm GI tract DVS27,DKFZp586H0523,NF-HEV,IL1F11,C9orf26 interleukin 33 flag
0
Mm Hs AKR1B10 0.005 0 0 0.014 0.003 1 Foveolar cells Endoderm GI tract AKR1B12,ARL-1,ARL1,HSI,ALDRLn,AKR1B11 aldo-keto reductase family 1 member B10 flag
0
Mm Hs LGALS4 0.032 0 0.333 0.039 0.031 4 Foveolar cells Endoderm GI tract GAL4 galectin 4 flag
0
Mm Hs KRT20 0.012 0 0 0.015 0.012 5 Foveolar cells Endoderm GI tract CK20,K20,MGC35423 keratin 20 flag
0
Mm Hs CLDN18 0.01 0 0.917 0.004 0.011 3 Foveolar cells Endoderm GI tract SFTPJ claudin 18 flag
0
Mm Hs GKN1 0.001 0 1 0 0 1 Foveolar cells Endoderm GI tract AMP18,CA11,BRICD1 gastrokine 1 flag
0
Mm Hs GKN2 0.001 0 1 0.002 0 1 Foveolar cells Endoderm GI tract TFIZ1,PRO813,VLTI465,blottin,GDDR,BRICD1B gastrokine 2 flag
0
Mm SPRR2A3 0.011 NA NA NA NA 1 Foveolar cells Endoderm GI tract small proline-rich protein 2A3 flag
0
Mm Hs PSCA 0.004 0 1 0.014 0.001 2 Foveolar cells Endoderm GI tract prostate stem cell antigen flag
0
Mm Hs LGALS2 0.032 0 1 0.038 0.03 5 Foveolar cells Endoderm GI tract HL14 galectin 2 Yflag
0
Mm Hs TFF2 0.002 0 0 0 0 4 Foveolar cells Endoderm GI tract SML1 trefoil factor 2 flag
0
Mm Hs MUC1 0.016 0 0.583 0.033 0.012 8 Foveolar cells Endoderm GI tract CD227,PEM,ADMCKD,ADMCKD1,MCKD,MCKD1 mucin 1, cell surface associated Yflag
0
Mm Hs PGC 0.005 0 1 0.006 0.004 2 Foveolar cells Endoderm GI tract progastricsin flag
0
Mm Hs GSTA1 0.012 0 1 0.03 0.008 3 Foveolar cells Endoderm GI tract glutathione S-transferase alpha 1 flag
0
Mm Hs CLPS 0.021 0 1 0.003 0.025 2 Foveolar cells Endoderm GI tract colipase flag
0
Mm Hs PLA2G1B 0.007 0 1 0.005 0.007 2 Foveolar cells Endoderm GI tract PLA2,PPLA2,PLA2A phospholipase A2 group IB flag
0
Mm GSDMA2 0 0 0.75 0 0 1 Foveolar cells Endoderm GI tract gasdermin A2 flag
0
Mm Hs PTGR1 0.042 0 0.917 0.062 0.035 1 Foveolar cells Endoderm GI tract ZADH3,LTB4DH prostaglandin reductase 1 flag
0
Mm Hs SULT1C2 0.002 0 0 0 0 1 Foveolar cells Endoderm GI tract ST1C1,SULT1C1 sulfotransferase family 1C member 2 flag
0
Mm Hs FOXQ1 0.026 0 0.083 0.001 0.032 2 Foveolar cells Endoderm GI tract HFH1 forkhead box Q1 flag
0
Mm Hs TFF1 0.006 0 0 0.02 0 3 Foveolar cells Endoderm GI tract D21S21,pS2,pNR-2,HP1.A,BCEI trefoil factor 1 flag
0
Mm Hs MUC5AC 0 0 0.75 0 0 4 Foveolar cells Endoderm GI tract mucin 5AC, oligomeric mucus/gel-forming flag
0
Mm Hs ANXA10 0.001 0 1 0.001 0 1 Foveolar cells Endoderm GI tract ANX14 annexin A10 flag

Datasets with computationally identified Foveolar cells

SRA SRS tissue cluster cell type p-value FDR View
SRA638923 SRS2797115 Stomach 0 Foveolar cells 8.78E-27 6.04E-24 view data
SRA638923 SRS2797115 Stomach 1 Foveolar cells 8.52E-19 1.76E-16 view data
SRA638923 SRS2797115 Stomach 2 Foveolar cells 3.67E-24 1.26E-21 view data
SRA638923 SRS2797115 Stomach 3 Foveolar cells 8.14E-30 1.68E-26 view data
SRA638923 SRS2797115 Stomach 4 Foveolar cells 2.88E-23 8.49E-21 view data
SRA638923 SRS2797115 Stomach 5 Foveolar cells 7.45E-15 1.28E-12 view data
SRA638923 SRS2797115 Stomach 6 Foveolar cells 2.52E-28 2.60E-25 view data
SRA638923 SRS2797115 Stomach 7 Foveolar cells 1.24E-21 3.21E-19 view data
SRA638923 SRS2797115 Stomach 8 Foveolar cells 1.96E-25 8.08E-23 view data
SRA638923 SRS2797115 Stomach 9 Foveolar cells 1.30E-26 6.71E-24 view data
SRA638923 SRS2797115 Stomach 10 Foveolar cells 3.75E-17 7.03E-15 view data
SRA638923 SRS2797115 Stomach 11 Foveolar cells 1.85E-21 4.25E-19 view data
SRA608353 SRS2517519 Hepatocellular carcinoma 4 Foveolar cells 2.05E-4 4.25E-2 view data
SRA608353 SRS2517519 Hepatocellular carcinoma 5 Foveolar cells 5.03E-5 1.31E-2 view data