Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for GABAergic neurons

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
10
Mm Hs GAD1 0.03 0 1 0.003 0.037 4 GABAergic neurons Ectoderm Brain GAD glutamate decarboxylase 1 Yflag
5
Mm Hs GAD2 0.073 0 1 0.024 0.086 2 GABAergic neurons Ectoderm Brain GAD65 glutamate decarboxylase 2 flag
1
Mm Hs SLC6A1 0.043 0 0 0.003 0 3 GABAergic neurons Ectoderm Brain GAT1,GABATR,GABATHG solute carrier family 6 member 1 Yflag
1
Mm Hs GABBR2 0.023 0 0 0.007 0.026 3 GABAergic neurons Ectoderm Brain HG20,GABABR2,GPRC3B,GPR51 gamma-aminobutyric acid type B receptor subunit 2 Yflag
1
Mm Hs GADD45B 0.108 0 0 0.194 0.091 2 GABAergic neurons Ectoderm Brain GADD45BETA,DKFZP566B133,MYD118 growth arrest and DNA damage inducible beta flag
1
Mm Hs PAX2 0.002 0 0 0.003 0.002 3 GABAergic neurons Ectoderm Brain paired box 2 Yflag
1
Mm Hs SLC32A1 0.026 0 0 0.002 0 4 GABAergic neurons Ectoderm Brain VGAT,bA122O1.1,VIAAT solute carrier family 32 member 1 flag
1
Mm Hs VIP 0.003 0 0 0 0 3 GABAergic neurons Ectoderm Brain vasoactive intestinal peptide flag
1
Mm Hs PVALB 0.005 0 0 0.003 0.006 5 GABAergic neurons Ectoderm Brain D22S749 parvalbumin flag
1
Mm Hs DLX1 0.036 0 0.375 0 0.045 3 GABAergic neurons Ectoderm Brain distal-less homeobox 1 flag
0
Mm Hs TNFAIP8L3 0.001 0 0 0 0 1 GABAergic neurons Ectoderm Brain FLJ41287 TNF alpha induced protein 8 like 3 flag
0
Mm Hs SEMA3C 0.04 0 0 0.013 0 1 GABAergic neurons Ectoderm Brain SemE,SEMAE semaphorin 3C flag
0
Mm Hs MYBPC1 0.001 0 0 0.003 0.001 1 GABAergic neurons Ectoderm Brain myosin binding protein C, slow type Yflag
0
Mm Hs PARM1 0.02 0 0.125 0.019 0.021 4 GABAergic neurons Ectoderm Brain DKFZP564O0823,Cipar1,WSC4 prostate androgen-regulated mucin-like protein 1 flag
-1
Mm Hs SST 0.027 0 0 0.048 0 5 GABAergic neurons Ectoderm Brain SMST somatostatin flag

Datasets with computationally identified GABAergic neurons

SRA SRS tissue cluster cell type p-value FDR View
SRA667466 SRS3060070 Cortex 3 13 GABAergic neurons 1.57E-4 1.07E-2 view data
SRA667466 SRS3059944 Hippocampus (ca1) 4 GABAergic neurons 3.11E-5 2.01E-3 view data
SRA667466 SRS3059946 Hippocampus (ca1) 3 GABAergic neurons 3.50E-4 2.02E-2 view data
SRA429320 SRS1467253 Retina 14 GABAergic neurons 1.45E-4 1.55E-2 view data
SRA667466 SRS3059964 Neo-cortex 12 GABAergic neurons 2.00E-4 1.71E-2 view data
SRA667466 SRS3060035 Hippocampus (ca1) 4 GABAergic neurons 1.29E-5 1.13E-3 view data
SRA667466 SRS3059948 Neo-cortex 1 GABAergic neurons 1.18E-4 9.91E-3 view data
SRA667466 SRS3059948 Neo-cortex 6 GABAergic neurons 1.94E-4 1.42E-2 view data