Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Goblet cells are simple columnar epithelial cells that secrete gel-forming mucins, like mucin MUC5AC. Goblet cells are typically found in the respiratory, reproductive and gastrointestinal tracts and are surrounded by stratified squamous cells. Differentiation of epithelial cells into goblet cells plays a key role in the excessive mucus production seen in many diseases, such as asthma and cancer.

Gene expression markers for Goblet cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
28
Mm Hs MUC2 0.007 0.824 0.806 0.002 0.006 2 Goblet cells Endoderm GI tract mucin 2, oligomeric mucus/gel-forming flag
7
Mm Hs MUC5AC 0 0 0 0 0.001 4 Goblet cells Endoderm GI tract mucin 5AC, oligomeric mucus/gel-forming flag
4
Mm Hs CLCA1 0.003 0.412 0.548 0 0.002 2 Goblet cells Endoderm GI tract CaCC,CLCRG1 chloride channel accessory 1 flag
3
Mm Hs KRT7 0.056 0 0.903 0.102 0.046 9 Goblet cells Endoderm GI tract CK7,K2C7 keratin 7 flag
2
Mm Hs MUC13 0.03 0.647 0.968 0.014 0.032 3 Goblet cells Endoderm GI tract DRCC1 mucin 13, cell surface associated flag
1
Mm Hs NLRP6 0.008 0 0.065 0 0.01 2 Goblet cells Endoderm GI tract PYPAF5,PAN3,CLR11.4,NALP6 NLR family pyrin domain containing 6 flag
1
Mm Hs FCGBP 0.011 0.824 0.968 0.01 0.008 1 Goblet cells Endoderm GI tract FC(GAMMA)BP Fc fragment of IgG binding protein flag
1
Mm Hs ZG16 0.013 0.882 0 0.01 0 2 Goblet cells Endoderm GI tract hZG16,JCLN1,ZG16A,JCLN zymogen granule protein 16 flag
1
Mm Hs GALNT12 0.004 0.059 0.645 0.002 0.003 1 Goblet cells Endoderm GI tract GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 Yflag
1
Mm Hs ATOH1 0.003 0.176 0.645 0 0.002 3 Goblet cells Endoderm GI tract HATH1,MATH-1,Math1,bHLHa14 atonal bHLH transcription factor 1 flag
1
Mm Hs SPDEF 0.004 0.412 0 0.008 0 2 Goblet cells Endoderm GI tract PDEF,bA375E1.3 SAM pointed domain containing ETS transcription factor flag
0
Mm Hs PLA2G10 0.004 0.235 0.484 0.005 0.003 1 Goblet cells Endoderm GI tract GXPLA2 phospholipase A2 group X flag
0
Mm Hs PDIA5 0.011 0.118 0.452 0.004 0.012 2 Goblet cells Endoderm GI tract FLJ30401 protein disulfide isomerase family A member 5 flag
0
Mm Hs REP15 0.001 0.235 0 0 0 1 Goblet cells Endoderm GI tract RAB15EP RAB15 effector protein flag
0
Mm Hs KLK1 0.013 0.588 0.903 0.005 0.012 7 Goblet cells Endoderm GI tract Klk6 kallikrein 1 Yflag
0
Mm Hs LRRC26 0.003 0 0.71 0 0.002 1 Goblet cells Endoderm GI tract bA350O14.10,OTTHUMG00000020980 leucine rich repeat containing 26 flag
0
Mm Hs TPSG1 0.003 0.176 0 0 0 2 Goblet cells Endoderm GI tract TMT,PRSS31 tryptase gamma 1 flag
0
Mm Hs MANF 0.431 0.412 0.935 0.211 0.477 1 Goblet cells Endoderm GI tract ARMET mesencephalic astrocyte derived neurotrophic factor flag
0
Mm CCL9 0.037 0 0.29 0 0.044 6 Goblet cells Endoderm GI tract chemokine (C-C motif) ligand 9 flag
0
Mm Hs CREB3L1 0.015 0.235 0.548 0.009 0.016 3 Goblet cells Endoderm GI tract OASIS cAMP responsive element binding protein 3 like 1 flag
0
Mm Hs SPINK4 0.014 0.706 0 0.003 0 2 Goblet cells Endoderm GI tract PEC-60,MGC133107 serine peptidase inhibitor, Kazal type 4 flag
0
Mm Hs PHGR1 0.031 1 0.968 0.037 0.027 4 Goblet cells Endoderm GI tract proline, histidine and glycine rich 1 flag
0
Mm Hs GUCA2A 0.015 0.353 0.935 0.014 0.014 3 Goblet cells Endoderm GI tract STARA,GUCA2 guanylate cyclase activator 2A flag
0
Mm MUC3 0.01 0 0.194 0 0.012 4 Goblet cells Endoderm GI tract mucin 3, intestinal flag
0
Mm Hs KRT20 0.012 0.412 0.387 0.013 0.011 5 Goblet cells Endoderm GI tract CK20,K20,MGC35423 keratin 20 flag
0
Mm Hs CDX2 0.015 0.235 0.516 0.007 0.016 3 Goblet cells Endoderm GI tract CDX3 caudal type homeobox 2 flag
0
Mm Hs AGR2 0.024 0.824 1 0.069 0.011 7 Goblet cells Endoderm GI tract XAG-2,HAG-2,PDIA17 anterior gradient 2, protein disulphide isomerase family member flag
0
Mm Hs TFF3 0.022 1 0 0.04 0 5 Goblet cells Endoderm GI tract HITF,ITF trefoil factor 3 flag
0
Mm Hs TMEM207 0 0 0 0 0 1 Goblet cells Endoderm GI tract transmembrane protein 207 flag
0
Mm Hs MUC5B 0.002 0.353 0 0.008 0.001 4 Goblet cells Endoderm GI tract MG1 mucin 5B, oligomeric mucus/gel-forming Yflag
0
Mm Hs MUC4 0.005 0.294 0.29 0.015 0.002 3 Goblet cells Endoderm GI tract mucin 4, cell surface associated flag
0
Mm Hs CDON 0.005 0 0 0 0.006 2 Goblet cells Endoderm GI tract ORCAM,CDO,CDON1 cell adhesion associated, oncogene regulated Yflag
0
Mm Hs AQP3 0.025 0.176 0 0.071 0.016 8 Goblet cells Endoderm GI tract GIL aquaporin 3 (Gill blood group) Yflag
0
Mm Hs ITLN1 0.009 0.765 0.516 0.002 0.009 2 Goblet cells Endoderm GI tract ITLN,FLJ20022,LFR,HL-1,hIntL intelectin 1 flag
0
Mm Hs OTOGL 0 0 0 0 0 1 Goblet cells Endoderm GI tract FLJ90579,C12orf64 otogelin like Yflag
0
Mm Hs SLC9A8 0.001 0 0 0 0 3 Goblet cells Endoderm GI tract KIAA0939,NHE8 solute carrier family 9 member A8 flag
-1
Mm Hs BACE2 0.018 0.176 0.516 0.049 0.011 3 Goblet cells Endoderm GI tract CEAP1,DRAP,ALP56,AEPLC beta-secretase 2 flag

Datasets with computationally identified Goblet cells

SRA SRS tissue cluster cell type p-value FDR View
SRA508949 SRS1876790 Small intestine 6 Goblet cells 1.32E-22 3.56E-20 view data
SRA703206 SRS3296613 Colon (Ulcerative Colitis) 16 Goblet cells 1.78E-14 1.14E-11 view data
SRA638923 SRS2797112 Small intestine 8 Goblet cells 4.59E-21 5.53E-18 view data
SRA728025 SRS3454426 Colon 7 Goblet cells 7.14E-14 3.30E-11 view data
SRA728025 SRS3454426 Colon 11 Goblet cells 5.77E-14 3.30E-11 view data
SRA508949 SRS1876785 Small intestine 4 Goblet cells 1.42E-12 2.83E-10 view data
SRA745734 SRS3600976 Intestinal epithelium 8 Goblet cells 2.39E-17 4.87E-15 view data
SRA728025 SRS3454428 Colon 2 Goblet cells 3.03E-4 1.27E-2 view data
SRA728025 SRS3454428 Colon 9 Goblet cells 3.88E-12 2.35E-9 view data
SRA508949 SRS1876787 Small intestine 3 Goblet cells 2.98E-12 4.12E-10 view data
SRA638923 SRS2797114 Small intestine 5 Goblet cells 2.03E-14 4.10E-12 view data
SRA745734 SRS3600974 Intestinal epithelium 10 Goblet cells 5.44E-19 9.04E-17 view data
SRA745734 SRS3600974 Intestinal epithelium 12 Goblet cells 1.32E-17 1.98E-15 view data
SRA728025 SRS3454430 Colon 3 Goblet cells 9.19E-15 7.36E-12 view data
SRA689041 SRS3166675 Colon 4 Goblet cells 5.98E-7 1.89E-4 view data
SRA728025 SRS3454422 Colon 7 Goblet cells 2.02E-13 2.34E-10 view data
SRA508949 SRS1876786 Small intestine 4 Goblet cells 2.73E-6 3.06E-4 view data
SRA628138 SRS2659230 Intestinal organoid epithelial cells 9 Goblet cells 8.24E-9 1.57E-6 view data
SRA745734 SRS3600975 Intestinal epithelium 11 Goblet cells 2.30E-23 8.19E-21 view data
SRA676027 SRS3102139 Embryonic stem cell line 16 Goblet cells 1.26E-11 3.83E-8 view data
SRA728025 SRS3454423 Colon 11 Goblet cells 9.70E-12 1.79E-8 view data
SRA508949 SRS1876788 Small intestine 3 Goblet cells 1.13E-17 4.48E-15 view data
SRA508949 SRS1876789 Small intestine 6 Goblet cells 8.17E-23 1.85E-20 view data
SRA692557 SRS4245406 Lung endoderm 19 Goblet cells 4.74E-5 8.61E-3 view data
SRA628138 SRS2659232 Intestinal organoid epithelial cells 5 Goblet cells 1.19E-5 1.54E-3 view data
SRA728025 SRS3454427 Colon 7 Goblet cells 1.49E-22 4.79E-19 view data
SRA628138 SRS2659224 Intestinal organoid epithelial cells 7 Goblet cells 3.30E-11 8.11E-9 view data
SRA745734 SRS3600977 Intestinal epithelium 8 Goblet cells 1.60E-17 2.03E-15 view data
SRA728025 SRS3454425 Colon 2 Goblet cells 1.28E-5 9.43E-4 view data
SRA728025 SRS3454425 Colon 4 Goblet cells 3.18E-7 4.76E-5 view data
SRA728025 SRS3454425 Colon 8 Goblet cells 2.71E-19 7.71E-16 view data
SRA728025 SRS3454425 Colon 10 Goblet cells 8.28E-13 5.89E-10 view data
SRA728025 SRS3454425 Colon 12 Goblet cells 6.49E-9 1.68E-6 view data
SRA728025 SRS3454421 Inflamed area of colon 12 Goblet cells 2.38E-18 5.89E-15 view data
SRA628138 SRS2659219 Intestinal organoid epithelial cells 4 Goblet cells 2.01E-4 1.89E-2 view data
SRA877776 SRS4655562 Distal small intestine 8 Goblet cells 2.58E-11 3.93E-9 view data
SRA628138 SRS2659225 Intestinal organoid epithelial cells 6 Goblet cells 8.93E-7 1.69E-4 view data
SRA653146 SRS2874272 Colon 5 Goblet cells 4.19E-15 1.32E-12 view data
SRA653146 SRS2874272 Colon 9 Goblet cells 2.84E-10 4.01E-8 view data
SRA653146 SRS2874272 Colon 10 Goblet cells 2.07E-12 4.04E-10 view data
SRA653146 SRS2874272 Colon 11 Goblet cells 3.03E-26 3.10E-23 view data
SRA653146 SRS2874272 Colon 12 Goblet cells 3.57E-13 7.30E-11 view data
SRA653146 SRS2874272 Colon 15 Goblet cells 1.49E-17 6.11E-15 view data
SRA653146 SRS2874272 Colon 19 Goblet cells 2.07E-13 4.46E-11 view data
SRA653146 SRS2874272 Colon 20 Goblet cells 1.20E-23 9.82E-21 view data
SRA653146 SRS2874272 Colon 21 Goblet cells 2.91E-11 4.77E-9 view data
SRA638923 SRS2797113 Small intestine 5 Goblet cells 9.90E-15 2.49E-12 view data
SRA728025 SRS3454424 Colon 4 Goblet cells 1.62E-19 4.03E-16 view data
SRA728025 SRS3454424 Colon 12 Goblet cells 9.10E-19 1.13E-15 view data