Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

Filter

get tsv file add marker

Gene expression markers for Hematopoietic stem cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
1
Mm Hs THY1 0.095 0 0 0.032 0 7 Hematopoietic stem cells Mesoderm Bone CD90 Thy-1 cell surface antigen flag
0
Mm Hs G0S2 0.04 0 0 0.045 0.038 4 Hematopoietic stem cells Mesoderm Bone G0/G1 switch 2 flag
0
Mm Hs MECOM 0.011 0 0.031 0.019 0.009 2 Hematopoietic stem cells Mesoderm Bone MDS1-EVI1,PRDM3,KMT8E,MDS1,EVI1 MDS1 and EVI1 complex locus Yflag
0
Mm Hs FGD5 0.007 0 0 0.001 0.009 2 Hematopoietic stem cells Mesoderm Bone ZFYVE23,FLJ39957,FLJ00274 FYVE, RhoGEF and PH domain containing 5 flag
0
Mm Hs EGR1 0.202 0 0.125 0.188 0.209 4 Hematopoietic stem cells Mesoderm Bone TIS8,G0S30,NGFI-A,KROX-24,ZIF-268,AT225,ZNF225 early growth response 1 flag
0
Mm Hs NCOR2 0.021 0 0.031 0.007 0.024 1 Hematopoietic stem cells Mesoderm Bone SMRT,SMRTE,TRAC-1,CTG26,TNRC14 nuclear receptor corepressor 2 flag
0
Mm Hs NKX3-1 0.002 0 0 0.013 0 1 Hematopoietic stem cells Mesoderm Bone NKX3.1,BAPX2,NKX3A NK3 homeobox 1 flag
0
Mm Hs HLX 0.022 0 0 0.003 0.026 1 Hematopoietic stem cells Mesoderm Bone HB24,HLX1 H2.0 like homeobox flag
0
Mm Hs IL3RA 0.008 0 0 0 0.008 3 Hematopoietic stem cells Mesoderm Bone CD123 interleukin 3 receptor subunit alpha flag
0
Mm Hs CD33 0.017 0 0 0.013 0.017 7 Hematopoietic stem cells Mesoderm Bone SIGLEC3,SIGLEC-3,FLJ00391 CD33 molecule flag
0
Mm Hs ANPEP 0.015 0 0 0.013 0.017 7 Hematopoietic stem cells Mesoderm Bone gp150,CD13,PEPN alanyl aminopeptidase, membrane flag
0
Mm Hs CD34 0.071 0 0.781 0.04 0.078 2 Hematopoietic stem cells Mesoderm Bone CD34 molecule flag
0
Mm Hs CTNNAL1 0.028 0 0 0.092 0.009 2 Hematopoietic stem cells Mesoderm Bone CLLP,alpha-CATU catenin alpha like 1 flag
0
Mm Hs MGST1 0.157 0 0 0.182 0.146 1 Hematopoietic stem cells Mesoderm Bone MGST-I,GST12 microsomal glutathione S-transferase 1 flag
0
Mm Hs GNL3 0.094 0 0.563 0.12 0.081 1 Hematopoietic stem cells Mesoderm Bone C77032,E2IG3,MGC800 G protein nucleolar 3 flag
0
Mm Hs APC 0.1 0 0.063 0.013 0.123 1 Hematopoietic stem cells Mesoderm Bone DP2.5,PPP1R46 APC, WNT signaling pathway regulator Yflag
0
Mm Hs TLR2 0.014 0 0 0.001 0 8 Hematopoietic stem cells Mesoderm Bone TIL4,CD282 toll like receptor 2 Yflag
0
Mm Hs HMGB3 0.271 0 0.813 0.161 0.293 1 Hematopoietic stem cells Mesoderm Bone HMG2A,MGC90319,HMG4 high mobility group box 3 Yflag
0
Mm Hs CD48 0.076 0 0.344 0.116 0.065 2 Hematopoietic stem cells Mesoderm Bone BLAST,mCD48,hCD48,SLAMF2,BCM1 CD48 molecule flag
0
Mm Hs CD44 0.127 0 0.125 0.3 0.088 9 Hematopoietic stem cells Mesoderm Bone IN,MC56,Pgp1,CD44R,HCELL,CSPG8,MIC4,MDU2,MDU3 CD44 molecule (Indian blood group) Yflag
0
Mm Hs PTPRC 0.125 0 0.219 0.216 0.106 8 Hematopoietic stem cells Mesoderm Bone T200,CD45 protein tyrosine phosphatase, receptor type C Yflag
0
Mm Hs CDH2 0.059 0 0 0.049 0.062 1 Hematopoietic stem cells Mesoderm Bone CDHN,CD325,NCAD cadherin 2 flag
0
Mm Hs TET2 0.008 0 0 0.004 0 2 Hematopoietic stem cells Mesoderm Bone FLJ20032,KIAA1546 tet methylcytosine dioxygenase 2 Yflag
0
Mm Hs HOXB5 0.003 0 0 0.005 0.002 3 Hematopoietic stem cells Mesoderm Bone HOX2A homeobox B5 flag
0
Mm Hs TRPC6 0.001 0 0 0.001 0 1 Hematopoietic stem cells Mesoderm Bone TRP6,FSGS2 transient receptor potential cation channel subfamily C member 6 Yflag
0
Mm Hs ACE 0.022 0 0 0.026 0.022 3 Hematopoietic stem cells Mesoderm Bone ACE1,CD143,DCP1 angiotensin I converting enzyme Yflag
0
Mm Hs ESAM 0.064 0 0.031 0.043 0.071 2 Hematopoietic stem cells Mesoderm Bone W117m endothelial cell adhesion molecule flag
0
Mm Hs PLXDC2 0.046 0 0 0.019 0.054 1 Hematopoietic stem cells Mesoderm Bone TEM7R,FLJ14623 plexin domain containing 2 flag
0
Mm Hs NOTCH2 0.096 0 0.281 0.02 0.114 2 Hematopoietic stem cells Mesoderm Bone notch 2 Yflag
0
Mm Hs NOTCH1 0.007 0 0.063 0.005 0.008 5 Hematopoietic stem cells Mesoderm Bone TAN1 notch 1 Yflag
0
Mm Hs GFI1B 0.005 0 0 0.019 0.002 2 Hematopoietic stem cells Mesoderm Bone ZNF163B growth factor independent 1B transcriptional repressor Yflag
0
Mm Hs ALDH1A1 0.039 0 0 0.088 0.029 5 Hematopoietic stem cells Mesoderm Bone RALDH1,PUMB1,ALDH1 aldehyde dehydrogenase 1 family member A1 flag
0
Mm Hs GFI1 0.001 0 0 0 0.001 2 Hematopoietic stem cells Mesoderm Bone GFI1A,GFI-1,ZNF163 growth factor independent 1 transcriptional repressor Yflag
0
Mm Hs GJB1 0.033 0 0 0.01 0.039 4 Hematopoietic stem cells Mesoderm Bone CX32,CMTX1,CMTX gap junction protein beta 1 Yflag
0
Mm Hs ITGA6 0.059 0 0.031 0.05 0.062 3 Hematopoietic stem cells Mesoderm Bone CD49f integrin subunit alpha 6 Yflag
0
Mm Hs MAFF 0.054 0 0 0.096 0.048 2 Hematopoietic stem cells Mesoderm Bone hMafF MAF bZIP transcription factor F flag
0
Mm Hs EGR3 0.004 0 0 0.003 0.005 2 Hematopoietic stem cells Mesoderm Bone PILOT early growth response 3 flag
0
Mm Hs NEO1 0.02 0 0 0.005 0.023 2 Hematopoietic stem cells Mesoderm Bone NGN,HsT17534,IGDCC2,NTN1R2 neogenin 1 flag
0
Mm Hs ERG 0.01 0 0.125 0.008 0.011 2 Hematopoietic stem cells Mesoderm Bone erg-3 ERG, ETS transcription factor flag
0
Mm Hs TAL1 0.004 0 0 0.007 0 3 Hematopoietic stem cells Mesoderm Bone bHLHa17,TCL5 TAL bHLH transcription factor 1, erythroid differentiation factor Yflag
0
Mm Hs PBX2 0.009 0 0 0.003 0.01 1 Hematopoietic stem cells Mesoderm Bone HOX12,PBX2MHC PBX homeobox 2 flag
0
Mm Hs VWF 0.016 0 0 0.027 0 4 Hematopoietic stem cells Mesoderm Bone F8VWF von Willebrand factor Yflag
0
Mm Hs SPN 0.029 0 0 0.051 0 5 Hematopoietic stem cells Mesoderm Bone LSN,CD43,GPL115 sialophorin flag
0
Mm Hs NFE2 0.015 0 0.938 0.018 0.012 1 Hematopoietic stem cells Mesoderm Bone NF-E2 nuclear factor, erythroid 2 flag
0
Mm Hs PROCR 0.016 0 0.125 0.029 0.013 3 Hematopoietic stem cells Mesoderm Bone EPCR,CCD41,CD201 protein C receptor flag
0
Mm Hs ANGPT1 0.01 0 1 0.002 0.01 6 Hematopoietic stem cells Mesoderm Bone KIAA0003,Ang1 angiopoietin 1 flag
0
Mm Hs GPR171 0.016 0 0.594 0.021 0.014 2 Hematopoietic stem cells Mesoderm Bone H963 G protein-coupled receptor 171 flag
0
Mm Hs GATA2 0.02 0 0.469 0.013 0.021 6 Hematopoietic stem cells Mesoderm Bone NFE1B GATA binding protein 2 Yflag
0
Mm Hs TAF7 0.092 0 0 0.309 0 1 Hematopoietic stem cells Mesoderm Bone TAFII55,TAF2F TATA-box binding protein associated factor 7 flag
0
Mm Hs PTPRE 0.054 0 0.938 0.04 0.055 1 Hematopoietic stem cells Mesoderm Bone PTPE protein tyrosine phosphatase, receptor type E flag
0
Mm Hs TGFB2 0.041 0 0 0.002 0 2 Hematopoietic stem cells Mesoderm Bone transforming growth factor beta 2 Yflag
0
Hs KITLG 0.001 0 0 0.006 0 4 Hematopoietic stem cells Mesoderm Bone SCF,Kitl,KL-1,FPH2,SLF,DFNA69 KIT ligand Yflag
0
Mm Hs MYADM 0.063 0 0 0.119 0.052 1 Hematopoietic stem cells Mesoderm Bone myeloid associated differentiation marker flag
0
Mm Hs CDCP1 0.01 0 0 0.025 0.008 2 Hematopoietic stem cells Mesoderm Bone CD318,SIMA135 CUB domain containing protein 1 flag
0
Mm Hs NKX2-3 0.003 0 0.063 0.004 0.003 2 Hematopoietic stem cells Mesoderm Bone NKX2.3,CSX3,NKX4-3,NKX2C NK2 homeobox 3 flag
0
Mm Hs BAALC 0.018 0 0 0.015 0.019 1 Hematopoietic stem cells Mesoderm Bone BAALC, MAP3K1 and KLF4 binding flag
0
Mm Hs ABCG2 0.038 0 0.063 0.005 0.047 7 Hematopoietic stem cells Mesoderm Bone EST157481,MXR,BCRP,ABCP,CD338 ATP binding cassette subfamily G member 2 (Junior blood group) Yflag
0
Hs ABCB1 0.001 0 0 0.006 0 1 Hematopoietic stem cells Mesoderm Bone P-gp,CD243,GP170,ABC20,PGY1,CLCS ATP binding cassette subfamily B member 1 Yflag
0
Mm Hs TEK 0.02 0 0 0.002 0 4 Hematopoietic stem cells Mesoderm Bone TIE2,TIE-2,VMCM1,CD202b,VMCM TEK receptor tyrosine kinase Yflag
0
Mm Hs CXCR4 0.04 0 0 0.198 0.009 18 Hematopoietic stem cells Mesoderm Bone LESTR,NPY3R,HM89,NPYY3R,D2S201E,fusin,HSY3RR,CD184 C-X-C motif chemokine receptor 4 Yflag
0
Mm Hs SLAMF1 0.001 0 0 0.002 0 4 Hematopoietic stem cells Mesoderm Bone CD150,SLAM signaling lymphocytic activation molecule family member 1 flag
0
Mm Hs FLT3 0.009 0 0.438 0.001 0.008 2 Hematopoietic stem cells Mesoderm Bone FLK2,CD135 fms related tyrosine kinase 3 Yflag
0
Mm Hs PROM1 0.021 0 0 0.007 0.024 6 Hematopoietic stem cells Mesoderm Bone AC133,CD133,RP41,CORD12,PROML1,STGD4 prominin 1 Yflag
0
Mm Hs KIT 0.015 0 0.719 0.003 0.017 10 Hematopoietic stem cells Mesoderm Bone CD117,SCFR,C-Kit,PBT KIT proto-oncogene receptor tyrosine kinase Yflag
0
Mm Hs MPL 0.001 0 0.313 0 0.001 3 Hematopoietic stem cells Mesoderm Bone CD110,TPOR MPL proto-oncogene, thrombopoietin receptor Yflag
0
Mm Hs HHEX 0.037 0 0.969 0.023 0.038 8 Hematopoietic stem cells Mesoderm Bone HEX,HOX11L-PEN,PRHX hematopoietically expressed homeobox flag
0
Mm Hs RUNX1 0.054 0 0 0.031 0 4 Hematopoietic stem cells Mesoderm Bone PEBP2A2,AMLCR1,AML1,CBFA2 runt related transcription factor 1 Yflag
0
Mm Hs TXNIP 0.194 0 0 0.355 0 1 Hematopoietic stem cells Mesoderm Bone VDUP1,EST01027,HHCPA78,THIF,ARRDC6 thioredoxin interacting protein flag
0
Mm Hs ROBO4 0.013 0 0 0.004 0 2 Hematopoietic stem cells Mesoderm Bone FLJ20798,MRB,ECSM4 roundabout guidance receptor 4 flag
0
Mm Hs GATA3 0.03 0 0 0.02 0.03 7 Hematopoietic stem cells Mesoderm Bone HDR GATA binding protein 3 Yflag
0
Mm Hs ITGA2B 0.003 0 0.125 0.004 0.003 3 Hematopoietic stem cells Mesoderm Bone CD41B,CD41,PPP1R93,GP2B integrin subunit alpha 2b Yflag
0
Mm Hs ARID3A 0.018 0 0 0.048 0.009 1 Hematopoietic stem cells Mesoderm Bone BRIGHT,DRIL1 AT-rich interaction domain 3A flag
0
Mm Hs MYCN 0.012 0 0.094 0.003 0.014 1 Hematopoietic stem cells Mesoderm Bone bHLHe37,N-myc,MYCNOT,NMYC MYCN proto-oncogene, bHLH transcription factor Yflag
0
Mm Hs DNMT3B 0.012 0 0.063 0.01 0.012 2 Hematopoietic stem cells Mesoderm Bone DNA methyltransferase 3 beta Yflag
0
Mm Hs ADGRG1 0.045 0 1 0.021 0.048 3 Hematopoietic stem cells Mesoderm Bone TM7LN4,TM7XN1,GPR56 adhesion G protein-coupled receptor G1 Yflag
0
Mm Hs MYCT1 0.022 0 0.719 0.022 0.022 1 Hematopoietic stem cells Mesoderm Bone MTLC,FLJ21269 MYC target 1 flag
0
Mm Hs RGS18 0.019 0 0 0.003 0 4 Hematopoietic stem cells Mesoderm Bone RGS13 regulator of G protein signaling 18 flag
0
Mm Hs HLF 0.02 0 0.844 0 0.023 2 Hematopoietic stem cells Mesoderm Bone MGC33822 HLF, PAR bZIP transcription factor flag
0
Mm Hs ELF1 0.094 0 0.938 0.124 0.085 1 Hematopoietic stem cells Mesoderm Bone E74 like ETS transcription factor 1 flag
0
Mm Hs LYL1 0.039 0 0.938 0.064 0.032 1 Hematopoietic stem cells Mesoderm Bone bHLHa18 LYL1, basic helix-loop-helix family member flag
0
Mm Hs MEIS1 0.024 0 0.938 0.038 0.018 2 Hematopoietic stem cells Mesoderm Bone Meis homeobox 1 flag
0
Mm Hs PTPRS 0.209 0 0.063 0 0.261 1 Hematopoietic stem cells Mesoderm Bone protein tyrosine phosphatase, receptor type S flag
-1
Hs CD59 0.07 0 0 0.372 0 2 Hematopoietic stem cells Mesoderm Bone 16.3A5,EJ16,EJ30,EL32,G344,p18-20,MIC11,MIN1,MSK21,MIN2,MIN3 CD59 molecule (CD59 blood group) Yflag
-1
Mm Hs BMI1 0.009 0 0 0.005 0.009 6 Hematopoietic stem cells Mesoderm Bone RNF51,PCGF4 BMI1 proto-oncogene, polycomb ring finger flag
-1
Mm Hs ITGA4 0.036 0 0.563 0.011 0.04 7 Hematopoietic stem cells Mesoderm Bone CD49d,CD49D integrin subunit alpha 4 flag
-1
Mm Hs THSD1 0.008 0 0 0.005 0 2 Hematopoietic stem cells Mesoderm Bone TMTSP thrombospondin type 1 domain containing 1 Yflag
-1
Mm Hs PITX2 0.01 0 0 0.011 0.009 5 Hematopoietic stem cells Mesoderm Bone IGDS,Brx1,Otlx2,IRID2,IHG2,RIEG,RIEG1,RGS paired like homeodomain 2 Yflag
-3
Mm Hs PRNP 0.242 0 0 0.08 0.284 1 Hematopoietic stem cells Mesoderm Bone CD230,AltPrP,GSS,CJD prion protein Yflag

Datasets with computationally identified Hematopoietic stem cells

SRA SRS tissue cluster cell type p-value FDR View
SRA636127 SRS2736126 Lsk cells from bone marrow 0 Hematopoietic stem cells 1.78E-5 1.36E-2 view data
SRA636127 SRS2736126 Lsk cells from bone marrow 2 Hematopoietic stem cells 4.60E-5 1.73E-2 view data
SRA636127 SRS2736126 Lsk cells from bone marrow 4 Hematopoietic stem cells 1.43E-4 4.70E-2 view data
SRA636127 SRS2736126 Lsk cells from bone marrow 5 Hematopoietic stem cells 1.84E-4 4.82E-2 view data
SRA636127 SRS2736126 Lsk cells from bone marrow 6 Hematopoietic stem cells 3.73E-5 1.72E-2 view data
SRA636127 SRS2736126 Lsk cells from bone marrow 7 Hematopoietic stem cells 3.94E-5 1.72E-2 view data
SRA636127 SRS2736126 Lsk cells from bone marrow 10 Hematopoietic stem cells 1.61E-4 4.70E-2 view data
SRA636127 SRS2736126 Lsk cells from bone marrow 14 Hematopoietic stem cells 2.07E-5 1.36E-2 view data
SRA638854 SRS2757539 Lks+ hematopoietic stem cells 0 Hematopoietic stem cells 5.79E-8 7.13E-5 view data
SRA638854 SRS2757539 Lks+ hematopoietic stem cells 1 Hematopoietic stem cells 2.26E-5 1.72E-2 view data
SRA638854 SRS2757539 Lks+ hematopoietic stem cells 7 Hematopoietic stem cells 6.23E-8 7.13E-5 view data
SRA636127 SRS2736124 Lsk cells from bone marrow 1 Hematopoietic stem cells 3.37E-6 4.16E-3 view data
SRA636127 SRS2736124 Lsk cells from bone marrow 4 Hematopoietic stem cells 3.03E-6 4.16E-3 view data
SRA636127 SRS2736124 Lsk cells from bone marrow 5 Hematopoietic stem cells 1.79E-5 1.10E-2 view data
SRA636127 SRS2736124 Lsk cells from bone marrow 7 Hematopoietic stem cells 8.94E-6 7.35E-3 view data
SRA636127 SRS2736124 Lsk cells from bone marrow 12 Hematopoietic stem cells 2.29E-5 1.13E-2 view data
SRA808665 SRS4036276 Bone marrow 2 Hematopoietic stem cells 6.92E-6 4.79E-3 view data
SRA808665 SRS4036275 Bone marrow 1 Hematopoietic stem cells 3.64E-5 2.54E-2 view data
SRA636127 SRS2736128 Lsk cells from bone marrow 0 Hematopoietic stem cells 2.59E-5 1.03E-2 view data
SRA636127 SRS2736129 Lsk cells from bone marrow 0 Hematopoietic stem cells 1.65E-4 4.64E-2 view data
SRA636127 SRS2736129 Lsk cells from bone marrow 2 Hematopoietic stem cells 2.65E-5 9.14E-3 view data
SRA636127 SRS2736132 Bone marrow 0 Hematopoietic stem cells 1.23E-4 4.16E-2 view data
SRA636127 SRS2736132 Bone marrow 1 Hematopoietic stem cells 2.66E-5 1.20E-2 view data
SRA653146 SRS2874278 Bone marrow 0 Hematopoietic stem cells 1.23E-7 1.49E-5 view data
SRA653146 SRS2874278 Bone marrow 4 Hematopoietic stem cells 2.09E-5 1.54E-3 view data
SRA653146 SRS2874278 Bone marrow 8 Hematopoietic stem cells 4.57E-6 3.77E-4 view data
SRA636127 SRS2736127 Lsk cells from bone marrow 0 Hematopoietic stem cells 6.34E-5 3.33E-2 view data
SRA636127 SRS2736127 Lsk cells from bone marrow 4 Hematopoietic stem cells 3.83E-5 2.51E-2 view data
SRA636127 SRS2736127 Lsk cells from bone marrow 6 Hematopoietic stem cells 3.94E-6 3.44E-3 view data
SRA636127 SRS2736127 Lsk cells from bone marrow 11 Hematopoietic stem cells 1.60E-6 2.10E-3 view data
SRA757237 SRS3664881 Bone marrow 1 Hematopoietic stem cells 4.44E-6 5.18E-3 view data
SRA757237 SRS3664881 Bone marrow 9 Hematopoietic stem cells 3.05E-5 2.13E-2 view data