Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: see doi:10.1038/s41586-018-0394-6

Gene expression markers for Ionocytes

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
3
Mm Hs FOXI1 0.001 0 1 0 0.001 2 Ionocytes Mesoderm Lungs FREAC6,FKHL10 forkhead box I1 Yflag
2
Mm Hs CFTR 0.003 0 1 0.007 0.003 3 Ionocytes Mesoderm Lungs ABC35,TNR-CFTR,CFTR/MRP,CF,ABCC7 cystic fibrosis transmembrane conductance regulator Yflag
1
Mm Hs ASCL3 0 0 1 0 0 1 Ionocytes Mesoderm Lungs bHLHa42,HASH3,Sgn1 achaete-scute family bHLH transcription factor 3 flag
1
Mm Hs FOXN4 0 0 0 0 0 1 Ionocytes Mesoderm Lungs forkhead box N4 flag
0
Mm CYP2F2 0.008 0 0 0 0.009 3 Ionocytes Mesoderm Lungs cytochrome P450, family 2, subfamily f, polypeptide 2 flag
0
Mm Hs SCGB1A1 0.028 0 0 0.011 0 4 Ionocytes Mesoderm Lungs CC10,CCSP,CC16,UGB secretoglobin family 1A member 1 Yflag
0
Mm Hs TFCP2L1 0.008 0 0 0.003 0 1 Ionocytes Mesoderm Lungs LBP-9,CRTR1 transcription factor CP2 like 1 flag
0
Mm Hs SLC12A2 0.074 0 0 0.05 0 4 Ionocytes Mesoderm Lungs NKCC1,BSC,BSC2,PPP1R141 solute carrier family 12 member 2 flag
0
Mm Hs CLCNKB 0.002 0 0 0 0.003 4 Ionocytes Mesoderm Lungs hClC-Kb chloride voltage-gated channel Kb Yflag
0
Mm Hs KCNMA1 0.043 0 1 0.018 0.048 6 Ionocytes Mesoderm Lungs KCa1.1,mSLO1,SLO potassium calcium-activated channel subfamily M alpha 1 Yflag
0
Mm Hs SLC9A4 0 0 0 0 0 1 Ionocytes Mesoderm Lungs NHE4 solute carrier family 9 member A4 flag
0
Mm Hs SLC9A7 0 0 0 0.001 0 1 Ionocytes Mesoderm Lungs NHE7 solute carrier family 9 member A7 flag

Datasets with computationally identified Ionocytes

SRA SRS tissue cluster cell type p-value FDR View
SRA780044 SRS3806574 Olfactory epithelium 16 Ionocytes 1.20E-5 3.35E-3 view data
SRA780044 SRS3806575 Olfactory epithelium 8 Ionocytes 1.16E-6 2.86E-4 view data
SRA780044 SRS3806572 Olfactory epithelium 19 Ionocytes 1.95E-5 8.10E-3 view data