Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Keratinocyte is the predominant cell type in the epidermis, the outermost layer of the skin, constituting 90% of the cells found there.

Gene expression markers for Keratinocytes

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
5
Mm Hs KRT10 0.099 0.6 0.459 0.387 0.026 2 Keratinocytes Mesoderm Skin K10,CK10,KPP keratin 10 Yflag
1
Mm Hs IVL 0.001 0.1 0.046 0 0.001 3 Keratinocytes Mesoderm Skin involucrin flag
1
Mm Hs CCL2 0.037 0.1 0.009 0.065 0.032 6 Keratinocytes Mesoderm Skin MCP1,MCP-1,MCAF,SMC-CF,GDCF-2,HC11,MGC9434,SCYA2 C-C motif chemokine ligand 2 Yflag
1
Mm Hs ANXA8 0.008 0 0.798 0.002 0.004 1 Keratinocytes Mesoderm Skin ANX8 annexin A8 flag
1
Mm Hs KRT16 0.005 0.4 0.606 0.007 0 2 Keratinocytes Mesoderm Skin NEPPK keratin 16 Yflag
1
Mm Hs DMKN 0.032 0.3 0.826 0.064 0.014 2 Keratinocytes Mesoderm Skin ZD52F10 dermokine flag
1
Mm Hs S100A14 0.03 0.7 0 0.095 0 2 Keratinocytes Mesoderm Skin BCMP84 S100 calcium binding protein A14 flag
1
Mm Hs KRT15 0.022 0.7 0.908 0.046 0.011 4 Keratinocytes Mesoderm Skin K15,CK15,K1CO keratin 15 flag
0
Hs CALML5 0.001 0.5 0 0.004 0 1 Keratinocytes Mesoderm Skin CLSP calmodulin like 5 flag
0
Mm Hs IL13RA1 0.016 0.1 0.312 0.029 0.011 2 Keratinocytes Mesoderm Skin IL-13Ra,NR4,CD213a1 interleukin 13 receptor subunit alpha 1 flag
0
Mm Hs PKP3 0.021 0.2 0.761 0.028 0.014 2 Keratinocytes Mesoderm Skin plakophilin 3 flag
0
Mm Hs PKP1 0.006 0.2 0.771 0.004 0.002 1 Keratinocytes Mesoderm Skin B6P plakophilin 1 Yflag
0
Mm Hs TRIM29 0.009 0.2 0 0.008 0 1 Keratinocytes Mesoderm Skin FLJ36085 tripartite motif containing 29 flag
0
Mm Hs DSC3 0.006 0.2 0.752 0.005 0.001 1 Keratinocytes Mesoderm Skin CDHF3,DSC,DSC1,DSC2,DSC4 desmocollin 3 Yflag
0
Mm Hs FST 0.02 0 0.092 0.036 0.015 4 Keratinocytes Mesoderm Skin follistatin flag
0
Mm Hs AQP3 0.025 0.6 0.798 0.069 0.01 8 Keratinocytes Mesoderm Skin GIL aquaporin 3 (Gill blood group) Yflag
0
Mm Hs FGF5 0.002 0 0 0.008 0.002 1 Keratinocytes Mesoderm Skin fibroblast growth factor 5 Yflag
0
Mm Hs TFAP2A 0.023 0.2 0 0.019 0 2 Keratinocytes Mesoderm Skin AP-2,TFAP2,AP2TF transcription factor AP-2 alpha Yflag
0
Mm Hs LGALS7 0.016 0.2 0.899 0.003 0.013 2 Keratinocytes Mesoderm Skin TP53I1,LGALS7A galectin 7 flag
0
Mm Hs SFN 0.051 0.5 0 0.078 0 3 Keratinocytes Mesoderm Skin YWHAS stratifin flag
0
Mm Hs KRT84 0.001 0 0.128 0 0 1 Keratinocytes Mesoderm Skin Hb-4,KRTHB4 keratin 84 flag
0
Mm Hs KRT36 0.002 0 0.294 0 0 1 Keratinocytes Mesoderm Skin KRTHA6 keratin 36 flag
0
Mm Hs KRT17 0.025 1 0.734 0.072 0.011 5 Keratinocytes Mesoderm Skin PCHC1 keratin 17 Yflag
0
Hs CD24 0.039 0.6 0 0.191 0 8 Keratinocytes Mesoderm Skin CD24A CD24 molecule flag
0
Mm Hs FLG 0 0 0.028 0 0 1 Keratinocytes Mesoderm Skin filaggrin Yflag
0
Mm Hs KPRP 0 0 0 0 0 1 Keratinocytes Mesoderm Skin C1orf45 keratinocyte proline rich protein flag
0
Mm Hs ICAM1 0.009 0 0.101 0.006 0.009 8 Keratinocytes Mesoderm Skin CD54 intercellular adhesion molecule 1 Yflag
0
Mm Hs TGM1 0.002 0.1 0 0.002 0 1 Keratinocytes Mesoderm Skin TGASE,TGK,LI,LI1,ICR2 transglutaminase 1 Yflag
0
Mm Hs KRT1 0.006 0 0.073 0.005 0.006 2 Keratinocytes Mesoderm Skin KRT1A keratin 1 Yflag
0
Mm Hs KRT5 0.019 0.6 0.963 0.043 0.008 6 Keratinocytes Mesoderm Skin KRT5A,EBS2 keratin 5 Yflag
0
Mm Hs KRT14 0.019 0.6 0.908 0.018 0.013 7 Keratinocytes Mesoderm Skin EBS3,EBS4 keratin 14 Yflag
0
Mm Hs RIPK4 0.005 0 0 0 0 1 Keratinocytes Mesoderm Skin DIK,ANKK2,RIP4,PKK,ANKRD3 receptor interacting serine/threonine kinase 4 Yflag
0
Mm Hs LAMA5 0.008 0 0.101 0.012 0.007 2 Keratinocytes Mesoderm Skin laminin subunit alpha 5 flag
0
Mm Hs LCN2 0.043 0.3 0.064 0.056 0.042 9 Keratinocytes Mesoderm Skin NGAL,24p3 lipocalin 2 flag
0
Mm Hs PLEC 0.056 0 0.734 0.03 0.058 2 Keratinocytes Mesoderm Skin PLTN,EBS1,PLEC1 plectin Yflag
0
Hs PI3 0.003 0.3 0 0.02 0 1 Keratinocytes Mesoderm Skin ESI,SKALP,ELAFIN,WAP3,WFDC14,cementoin peptidase inhibitor 3 flag
0
Mm Hs SPRR1B 0.002 0.3 0 0.004 0 2 Keratinocytes Mesoderm Skin GADD33,SPRR1 small proline rich protein 1B flag
0
Mm Hs GJB3 0.008 0.2 0.138 0.009 0.007 1 Keratinocytes Mesoderm Skin CX31,EKV gap junction protein beta 3 Yflag
0
Mm Hs IRF3 0.019 0 0.165 0.019 0.015 1 Keratinocytes Mesoderm Skin interferon regulatory factor 3 Yflag
0
Mm Hs LAMC2 0.012 0 0.413 0.023 0.007 4 Keratinocytes Mesoderm Skin nicein-100kDa,kalinin-105kDa,BM600-100kDa,EBR2,LAMB2T,LAMNB2,EBR2A laminin subunit gamma 2 Yflag
0
Mm Hs SIRT7 0.025 0.2 0 0.014 0 1 Keratinocytes Mesoderm Skin sirtuin 7 flag
-1
Mm Hs ENTPD2 0.012 0 0 0.001 0.015 4 Keratinocytes Mesoderm Skin NTPDase-2,CD39L1 ectonucleoside triphosphate diphosphohydrolase 2 flag
-1
Mm Hs NGFR 0.007 0 0.009 0.002 0.007 6 Keratinocytes Mesoderm Skin TNFRSF16,CD271,p75NTR nerve growth factor receptor flag
-1
Mm Hs CXCL1 0.032 0.3 0.046 0.045 0.03 8 Keratinocytes Mesoderm Skin SCYB1,GROa,MGSA-a,NAP-3,MGSA,GRO1,FSP C-X-C motif chemokine ligand 1 flag
-1
Mm Hs SGPP1 0.011 0 0 0.001 0 1 Keratinocytes Mesoderm Skin sphingosine-1-phosphate phosphatase 1 flag
-1
Mm Hs SBSN 0.003 0.2 0 0 0 1 Keratinocytes Mesoderm Skin UNQ698,HLAR698 suprabasin flag
-1
Mm Hs REL 0.03 0.3 0 0.037 0 1 Keratinocytes Mesoderm Skin I-Rel,c-Rel REL proto-oncogene, NF-kB subunit flag
-2
Mm Hs SPRR1A 0.004 0.2 0 0 0 2 Keratinocytes Mesoderm Skin small proline rich protein 1A flag

Datasets with computationally identified Keratinocytes

SRA SRS tissue cluster cell type p-value FDR View
SRA643298 SRS2804420 CD45+ dermal immune cells 2 Keratinocytes 1.45E-7 6.61E-5 view data
SRA643298 SRS2804420 CD45+ dermal immune cells 10 Keratinocytes 2.08E-6 4.44E-4 view data
SRA594984 SRS2397146 Embryonic skin 14 Keratinocytes 3.04E-5 1.35E-2 view data
SRA697687 SRS3234701 Skin 22 Keratinocytes 2.75E-6 8.05E-4 view data
SRA783173 SRS3818733 Epidermal cells 9 Keratinocytes 3.09E-6 1.28E-3 view data
SRA653146 SRS2874284 Tongue 0 Keratinocytes 1.38E-10 3.98E-8 view data
SRA653146 SRS2874284 Tongue 1 Keratinocytes 6.95E-10 1.46E-7 view data
SRA653146 SRS2874284 Tongue 2 Keratinocytes 1.96E-9 3.49E-7 view data
SRA653146 SRS2874284 Tongue 3 Keratinocytes 3.48E-10 8.05E-8 view data
SRA653146 SRS2874284 Tongue 4 Keratinocytes 1.59E-11 5.25E-9 view data
SRA653146 SRS2874284 Tongue 5 Keratinocytes 7.70E-12 3.38E-9 view data
SRA653146 SRS2874284 Tongue 6 Keratinocytes 2.13E-12 1.88E-9 view data
SRA653146 SRS2874284 Tongue 7 Keratinocytes 1.06E-12 1.88E-9 view data
SRA653146 SRS2874284 Tongue 8 Keratinocytes 8.76E-12 3.38E-9 view data
SRA653146 SRS2874284 Tongue 9 Keratinocytes 3.78E-9 6.25E-7 view data
SRA653146 SRS2874284 Tongue 10 Keratinocytes 1.73E-10 4.46E-8 view data
SRA653146 SRS2874284 Tongue 11 Keratinocytes 6.83E-12 3.38E-9 view data
SRA653146 SRS2874284 Tongue 12 Keratinocytes 2.44E-12 1.88E-9 view data
SRA653146 SRS3044236 Tongue 0 Keratinocytes 6.10E-9 1.31E-6 view data
SRA653146 SRS3044236 Tongue 1 Keratinocytes 5.66E-11 2.44E-8 view data
SRA653146 SRS3044236 Tongue 2 Keratinocytes 3.51E-10 1.17E-7 view data
SRA653146 SRS3044236 Tongue 3 Keratinocytes 6.06E-13 3.62E-10 view data
SRA653146 SRS3044236 Tongue 4 Keratinocytes 1.47E-14 2.22E-11 view data
SRA653146 SRS3044236 Tongue 5 Keratinocytes 8.51E-10 2.14E-7 view data
SRA653146 SRS3044236 Tongue 6 Keratinocytes 6.11E-9 1.31E-6 view data
SRA653146 SRS3044236 Tongue 7 Keratinocytes 1.24E-6 2.33E-4 view data
SRA653146 SRS3044236 Tongue 8 Keratinocytes 7.51E-10 2.14E-7 view data
SRA653146 SRS3044236 Tongue 9 Keratinocytes 8.54E-10 2.14E-7 view data
SRA653146 SRS3044236 Tongue 10 Keratinocytes 7.22E-13 3.62E-10 view data
SRA653146 SRS3044236 Tongue 11 Keratinocytes 5.64E-15 1.70E-11 view data
SRA653146 SRS3044236 Tongue 12 Keratinocytes 1.09E-13 8.19E-11 view data
SRA653146 SRS3044236 Tongue 13 Keratinocytes 1.91E-10 7.17E-8 view data
SRA653146 SRS3044236 Tongue 14 Keratinocytes 2.60E-14 2.61E-11 view data
SRA653146 SRS3044236 Tongue 16 Keratinocytes 7.42E-6 1.31E-3 view data
SRA653146 SRS3044243 Spleen 15 Keratinocytes 3.25E-4 2.27E-2 view data
SRA640325 SRS2769051 Lung proximal airway stromal cells 14 Keratinocytes 1.43E-4 8.84E-3 view data
SRA780044 SRS3806574 Olfactory epithelium 17 Keratinocytes 8.74E-5 2.09E-2 view data
SRA585365 SRS3297652 Pancreas 20 Keratinocytes 2.21E-6 6.33E-4 view data
SRA585365 SRS3297652 Pancreas 27 Keratinocytes 2.34E-5 4.17E-3 view data
SRA681285 SRS3121028 Dermis 18 Keratinocytes 2.31E-17 1.30E-14 view data
SRA585365 SRS3297653 Pancreas 17 Keratinocytes 6.21E-7 2.12E-4 view data
SRA643298 SRS2804423 CD45+ dermal immune cells 3 Keratinocytes 1.11E-11 1.17E-8 view data
SRA643298 SRS2804423 CD45+ dermal immune cells 5 Keratinocytes 1.07E-11 1.17E-8 view data
SRA664171 SRS3020563 Prostate basal cells 0 Keratinocytes 2.33E-4 4.07E-2 view data
SRA664171 SRS3020563 Prostate basal cells 1 Keratinocytes 2.54E-5 8.21E-3 view data
SRA664171 SRS3020563 Prostate basal cells 2 Keratinocytes 3.42E-6 2.03E-3 view data
SRA664171 SRS3020563 Prostate basal cells 3 Keratinocytes 6.65E-6 2.63E-3 view data
SRA664171 SRS3020563 Prostate basal cells 4 Keratinocytes 4.70E-5 1.20E-2 view data
SRA664171 SRS3020563 Prostate basal cells 5 Keratinocytes 2.91E-4 4.50E-2 view data
SRA664171 SRS3020563 Prostate basal cells 8 Keratinocytes 1.68E-4 3.32E-2 view data
SRA823777 SRS4151081 Mammary gland 0 Keratinocytes 9.57E-5 4.40E-2 view data
SRA823777 SRS4151081 Mammary gland 6 Keratinocytes 1.64E-5 2.67E-2 view data
SRA823777 SRS4151081 Mammary gland 7 Keratinocytes 2.96E-5 2.67E-2 view data
SRA653146 SRS3044240 Bladder 5 Keratinocytes 3.34E-5 6.61E-3 view data
SRA742961 SRS3565202 Prostate 15 Keratinocytes 1.98E-4 2.00E-2 view data
SRA653146 SRS2874281 Skin 0 Keratinocytes 1.96E-8 3.49E-6 view data
SRA653146 SRS2874281 Skin 1 Keratinocytes 6.68E-10 1.95E-7 view data
SRA653146 SRS2874281 Skin 2 Keratinocytes 1.14E-9 2.60E-7 view data
SRA653146 SRS2874281 Skin 3 Keratinocytes 3.95E-12 3.16E-9 view data
SRA653146 SRS2874281 Skin 4 Keratinocytes 7.79E-10 2.08E-7 view data
SRA653146 SRS2874281 Skin 5 Keratinocytes 5.73E-10 1.84E-7 view data
SRA653146 SRS2874281 Skin 6 Keratinocytes 6.10E-9 1.22E-6 view data
SRA653146 SRS2874281 Skin 7 Keratinocytes 5.35E-7 6.34E-5 view data
SRA653146 SRS2874281 Skin 8 Keratinocytes 3.22E-11 1.47E-8 view data
SRA653146 SRS2874281 Skin 9 Keratinocytes 2.83E-13 4.53E-10 view data
SRA653146 SRS2874281 Skin 10 Keratinocytes 1.77E-12 1.89E-9 view data
SRA653146 SRS2874281 Skin 11 Keratinocytes 4.72E-10 1.68E-7 view data
SRA653146 SRS2874281 Skin 12 Keratinocytes 1.04E-10 4.18E-8 view data
SRA653146 SRS2874281 Skin 13 Keratinocytes 1.06E-8 2.00E-6 view data
SRA653146 SRS2874281 Skin 14 Keratinocytes 3.91E-8 5.97E-6 view data
SRA653146 SRS2874281 Skin 15 Keratinocytes 4.86E-9 1.04E-6 view data
SRA653146 SRS2874281 Skin 16 Keratinocytes 9.26E-6 8.73E-4 view data
SRA742961 SRS3565196 Prostate 9 Keratinocytes 3.37E-6 7.50E-4 view data
SRA653146 SRS3044237 Tongue 0 Keratinocytes 1.62E-9 3.64E-7 view data
SRA653146 SRS3044237 Tongue 1 Keratinocytes 1.65E-9 3.64E-7 view data
SRA653146 SRS3044237 Tongue 2 Keratinocytes 3.12E-13 2.07E-10 view data
SRA653146 SRS3044237 Tongue 3 Keratinocytes 4.33E-9 8.83E-7 view data
SRA653146 SRS3044237 Tongue 4 Keratinocytes 6.73E-10 1.79E-7 view data
SRA653146 SRS3044237 Tongue 5 Keratinocytes 9.88E-11 3.75E-8 view data
SRA653146 SRS3044237 Tongue 6 Keratinocytes 1.55E-10 5.16E-8 view data
SRA653146 SRS3044237 Tongue 7 Keratinocytes 4.02E-14 3.56E-11 view data
SRA653146 SRS3044237 Tongue 8 Keratinocytes 2.21E-10 6.51E-8 view data
SRA653146 SRS3044237 Tongue 9 Keratinocytes 4.54E-24 1.20E-20 view data
SRA653146 SRS3044237 Tongue 10 Keratinocytes 3.67E-12 1.62E-9 view data
SRA653146 SRS3044237 Tongue 11 Keratinocytes 3.60E-14 3.56E-11 view data
SRA653146 SRS3044237 Tongue 12 Keratinocytes 1.75E-12 9.31E-10 view data
SRA653146 SRS3044237 Tongue 13 Keratinocytes 1.88E-6 2.94E-4 view data
SRA783173 SRS3818732 Epidermal cells 0 Keratinocytes 1.09E-4 1.70E-2 view data
SRA783173 SRS3818732 Epidermal cells 8 Keratinocytes 7.68E-8 3.40E-5 view data
SRA802096 SRS4005009 Skin 5 Keratinocytes 3.43E-8 2.81E-5 view data
SRA802096 SRS4005009 Skin 6 Keratinocytes 9.06E-9 9.27E-6 view data
SRA643298 SRS2804421 CD45+ dermal immune cells 2 Keratinocytes 2.51E-10 2.63E-7 view data
SRA643298 SRS2804421 CD45+ dermal immune cells 3 Keratinocytes 2.65E-4 3.46E-2 view data
SRA643298 SRS2804421 CD45+ dermal immune cells 4 Keratinocytes 1.80E-7 6.28E-5 view data
SRA605365 SRS2492922 Nasal airway epithelium 6 Keratinocytes 6.18E-13 3.30E-10 view data
SRA605365 SRS2492922 Nasal airway epithelium 9 Keratinocytes 1.16E-12 4.96E-10 view data
SRA605365 SRS2492922 Nasal airway epithelium 10 Keratinocytes 1.87E-7 2.10E-5 view data
SRA594984 SRS2397150 Embryonic skin 2 Keratinocytes 1.94E-5 6.90E-3 view data
SRA594984 SRS2397150 Embryonic skin 9 Keratinocytes 2.20E-7 1.37E-4 view data
SRA585365 SRS3297651 Pancreas 21 Keratinocytes 2.94E-5 4.66E-3 view data
SRA585365 SRS3297654 Pancreas 18 Keratinocytes 5.63E-7 1.76E-4 view data
SRA594984 SRS2397149 Embryonic skin 0 Keratinocytes 4.83E-5 1.58E-2 view data
SRA594984 SRS2397149 Embryonic skin 8 Keratinocytes 7.93E-10 9.07E-7 view data
SRA653146 SRS2874277 Mammary gland 14 Keratinocytes 4.48E-12 1.04E-9 view data
SRA742961 SRS3565197 Prostate 8 Keratinocytes 9.17E-5 7.26E-3 view data
SRA653146 SRS3044254 Tongue 0 Keratinocytes 1.16E-7 2.38E-5 view data
SRA653146 SRS3044254 Tongue 1 Keratinocytes 3.93E-9 1.16E-6 view data
SRA653146 SRS3044254 Tongue 2 Keratinocytes 6.88E-8 1.52E-5 view data
SRA653146 SRS3044254 Tongue 3 Keratinocytes 7.71E-9 2.05E-6 view data
SRA653146 SRS3044254 Tongue 4 Keratinocytes 1.96E-12 2.60E-9 view data
SRA653146 SRS3044254 Tongue 5 Keratinocytes 7.28E-12 4.84E-9 view data
SRA653146 SRS3044254 Tongue 6 Keratinocytes 1.17E-10 4.44E-8 view data
SRA653146 SRS3044254 Tongue 7 Keratinocytes 3.04E-12 2.69E-9 view data
SRA653146 SRS3044254 Tongue 8 Keratinocytes 7.07E-10 2.34E-7 view data
SRA653146 SRS3044254 Tongue 9 Keratinocytes 2.95E-5 5.22E-3 view data
SRA653146 SRS3044254 Tongue 10 Keratinocytes 2.13E-11 1.13E-8 view data
SRA653146 SRS3044254 Tongue 11 Keratinocytes 5.21E-11 2.31E-8 view data
SRA653146 SRS3044254 Tongue 12 Keratinocytes 1.62E-7 3.07E-5 view data
SRA653146 SRS3044254 Tongue 13 Keratinocytes 6.53E-13 1.73E-9 view data