Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for Myocytes

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
1
Mm Hs ITGA3 0.012 0 0 0.02 0.009 3 Myocytes Mesoderm Skeletal muscle CD49c,VLA3a,VCA-2,GAP-B3,MSK18 integrin subunit alpha 3 Yflag
0
Mm Hs PXN 0.021 0 0.222 0.015 0.021 2 Myocytes Mesoderm Skeletal muscle paxillin flag
0
Mm Hs SULF1 0.013 0 0 0.018 0 4 Myocytes Mesoderm Skeletal muscle KIAA1077,SULF-1,hSulf-1 sulfatase 1 flag
0
Mm Hs PTGIR 0.001 0 0 0.002 0.001 1 Myocytes Mesoderm Skeletal muscle prostaglandin I2 receptor flag
0
Mm Hs PRKCQ 0.007 0 0 0 0.009 1 Myocytes Mesoderm Skeletal muscle protein kinase C theta flag
0
Mm Hs PLD1 0.004 0 0 0.002 0.005 2 Myocytes Mesoderm Skeletal muscle phospholipase D1 flag
0
Mm OLFR599 0 0 0 0 0 1 Myocytes Mesoderm Skeletal muscle olfactory receptor 599 flag
0
Mm Hs NPHS1 0.002 0 0 0.007 0.001 2 Myocytes Mesoderm Skeletal muscle CNF,NPHN NPHS1, nephrin Yflag
0
Mm Hs NOTCH3 0.02 0 0 0.014 0.022 8 Myocytes Mesoderm Skeletal muscle CASIL,CADASIL notch 3 Yflag
0
Mm Hs MYH14 0.019 0 0 0.001 0.023 1 Myocytes Mesoderm Skeletal muscle FLJ13881,KIAA2034,MHC16,MYH17,DFNA4 myosin heavy chain 14 Yflag
0
Mm Hs MRC1 0.029 0 0 0.01 0.035 5 Myocytes Mesoderm Skeletal muscle CLEC13D,CD206,bA541I19.1,CLEC13DL,MRC1L1 mannose receptor C-type 1 flag
0
Mm Hs MMP9 0.015 0 0 0.01 0.017 6 Myocytes Mesoderm Skeletal muscle CLG4B matrix metallopeptidase 9 Yflag
0
Mm Hs IQSEC1 0.054 0 0.222 0.001 0.067 1 Myocytes Mesoderm Skeletal muscle KIAA0763,GEP100,BRAG2,ARF-GEP100 IQ motif and Sec7 domain 1 flag
0
Mm IL4RA 0.013 0 0 0 0.017 5 Myocytes Mesoderm Skeletal muscle interleukin 4 receptor, alpha flag
0
Mm Hs FLNC 0.01 0 0.444 0.003 0.01 3 Myocytes Mesoderm Skeletal muscle ABPL,FLN2 filamin C Yflag
0
Mm Hs DOCK5 0.009 0 0 0.037 0.002 2 Myocytes Mesoderm Skeletal muscle FLJ21034 dedicator of cytokinesis 5 flag
0
Mm Hs DOCK1 0.01 0 0 0.002 0.013 2 Myocytes Mesoderm Skeletal muscle DOCK180,ced5 dedicator of cytokinesis 1 flag
0
Mm Hs DLL1 0.003 0 0 0.005 0.003 2 Myocytes Mesoderm Skeletal muscle delta like canonical Notch ligand 1 flag
0
Mm Hs CXCR4 0.04 0 0 0.198 0.009 18 Myocytes Mesoderm Skeletal muscle LESTR,NPY3R,HM89,NPYY3R,D2S201E,fusin,HSY3RR,CD184 C-X-C motif chemokine receptor 4 Yflag
0
Mm Hs CMKLR1 0.003 0 0 0 0.003 3 Myocytes Mesoderm Skeletal muscle RVER1 chemerin chemokine-like receptor 1 flag
0
Mm Hs CDH15 0.003 0 0.444 0.002 0.003 3 Myocytes Mesoderm Skeletal muscle CDH3 cadherin 15 Yflag
0
Mm Hs ACTC1 0.011 0 0.444 0.013 0.008 3 Myocytes Mesoderm Skeletal muscle CMD1R,ACTC actin, alpha, cardiac muscle 1 Yflag
0
Mm Hs MEF2D 0.002 0 0.111 0.002 0.002 1 Myocytes Mesoderm Skeletal muscle myocyte enhancer factor 2D flag
0
Mm Hs THBS4 0.002 0 0 0.003 0 1 Myocytes Mesoderm Skeletal muscle thrombospondin 4 Yflag
0
Mm Hs ENO3 0.01 0 0.889 0 0.01 4 Myocytes Mesoderm Skeletal muscle enolase 3 Yflag
0
Mm Hs PYGM 0.002 0 0.778 0 0.002 2 Myocytes Mesoderm Skeletal muscle glycogen phosphorylase, muscle associated Yflag
0
Mm Hs MYOZ1 0 0 0.556 0 0 1 Myocytes Mesoderm Skeletal muscle FATZ,MYOZ myozenin 1 flag
0
Mm Hs TCAP 0.003 0 0 0 0 2 Myocytes Mesoderm Skeletal muscle T-cap,TELE,telethonin,CMD1N,LGMD2G titin-cap Yflag
0
Mm Hs CKM 0.003 0 0.556 0.002 0.003 2 Myocytes Mesoderm Skeletal muscle CKMM creatine kinase, M-type flag
0
Mm Hs MYL1 0.003 0 0.889 0.001 0.002 2 Myocytes Mesoderm Skeletal muscle myosin light chain 1 flag
0
Mm Hs MYLPF 0.006 0 1 0.001 0.006 1 Myocytes Mesoderm Skeletal muscle HUMMLC2B,MYL11 myosin light chain, phosphorylatable, fast skeletal muscle flag
0
Mm Hs CHODL 0.004 0 0 0.001 0.004 3 Myocytes Mesoderm Skeletal muscle FLJ12627,PRED12,MT75,C21orf68 chondrolectin flag
0
Mm Hs POPDC2 0.002 0 0.111 0 0.002 1 Myocytes Mesoderm Skeletal muscle popeye domain containing 2 flag
0
Mm Hs CAV3 0.001 0 0.333 0 0.001 1 Myocytes Mesoderm Skeletal muscle VIP-21,LGMD1C,VIP21,LQT9 caveolin 3 Yflag
0
Mm Hs MEF2B 0.001 0 0 0 0.002 1 Myocytes Mesoderm Skeletal muscle RSRFR2 myocyte enhancer factor 2B flag
0
Mm Hs MEF2A 0.064 0 0.333 0.009 0.077 1 Myocytes Mesoderm Skeletal muscle RSRFC4,RSRFC9 myocyte enhancer factor 2A Yflag
0
Mm Hs GATA5 0.002 0 0 0.001 0.001 2 Myocytes Mesoderm Skeletal muscle bB379O24.1,GATAS GATA binding protein 5 Yflag
0
Mm Hs GATA4 0.008 0 0 0.005 0.008 6 Myocytes Mesoderm Skeletal muscle GATA binding protein 4 Yflag
0
Mm Hs EDN1 0.01 0 0 0.038 0.005 1 Myocytes Mesoderm Skeletal muscle ET1 endothelin 1 Yflag
0
Mm Hs NPPB 0.003 0 0 0.002 0.002 2 Myocytes Mesoderm Skeletal muscle natriuretic peptide B flag
0
Mm Hs NPPA 0 0 0 0 0 2 Myocytes Mesoderm Skeletal muscle ANP,PND natriuretic peptide A Yflag
0
Mm Hs WIPF1 0.02 0 0 0.046 0 2 Myocytes Mesoderm Skeletal muscle WIP,WASPIP WAS/WASL interacting protein family member 1 Yflag
0
Mm Hs WASHC1 0.013 0 0 0 0 1 Myocytes Mesoderm Skeletal muscle FLJ00038,FAM39E,WASH1 WASH complex subunit 1 flag
0
Mm Hs TRIO 0.028 0 0 0.008 0 1 Myocytes Mesoderm Skeletal muscle ARHGEF23 trio Rho guanine nucleotide exchange factor flag
0
Mm Hs ANKRD1 0.007 0 0.333 0.008 0.006 4 Myocytes Mesoderm Skeletal muscle C-193,ALRP,CVARP,MCARP ankyrin repeat domain 1 flag
0
Mm Hs LDB3 0.004 0 0.667 0.002 0.003 1 Myocytes Mesoderm Skeletal muscle PDLIM6,KIAA0613,ZASP,CMD1C LIM domain binding 3 Yflag
0
Mm Hs LDB1 0.015 0 0 0.001 0.019 1 Myocytes Mesoderm Skeletal muscle NLI,CLIM2 LIM domain binding 1 flag
0
Mm Hs LAMB1 0.051 0 0.111 0.046 0.052 2 Myocytes Mesoderm Skeletal muscle laminin subunit beta 1 Yflag
0
Mm Hs LAMA2 0.007 0 0 0.012 0.007 2 Myocytes Mesoderm Skeletal muscle LAMM laminin subunit alpha 2 Yflag
0
Mm Hs ITGA7 0.003 0 0.333 0.002 0.004 2 Myocytes Mesoderm Skeletal muscle integrin subunit alpha 7 Yflag
0
Mm Hs IL4 0.002 0 0 0 0.003 4 Myocytes Mesoderm Skeletal muscle BSF1,IL-4,BCGF1,BCGF-1,MGC79402 interleukin 4 flag
0
Mm Hs DMD 0.012 0 0.111 0.005 0.014 3 Myocytes Mesoderm Skeletal muscle DXS142,DXS164,DXS206,DXS230,DXS239,DXS268,DXS269,DXS270,DXS272,MRX85 dystrophin Yflag
0
Mm Hs DES 0.021 0 1 0.009 0.023 11 Myocytes Mesoderm Skeletal muscle CMD1I,CSM1,CSM2 desmin Yflag
0
Mm Hs CLOCK 0.017 0 0.111 0.035 0.014 1 Myocytes Mesoderm Skeletal muscle KIAA0334,KAT13D,bHLHe8 clock circadian regulator flag
0
Mm Hs CAPZA3 0.007 0 0 0.027 0.004 1 Myocytes Mesoderm Skeletal muscle Gsg3,CAPPA3 capping actin protein of muscle Z-line subunit alpha 3 flag
0
Mm Hs ANKRD2 0 0 0.111 0 0 1 Myocytes Mesoderm Skeletal muscle ARPP ankyrin repeat domain 2 flag
0
Mm Hs MSTN 0.002 0 0 0 0.002 2 Myocytes Mesoderm Skeletal muscle GDF8 myostatin Yflag
0
Mm Hs ACTN3 0.001 0 0.778 0 0 1 Myocytes Mesoderm Skeletal muscle actinin alpha 3 (gene/pseudogene) flag
0
Mm Hs ACTN2 0.005 0 0.222 0 0.006 2 Myocytes Mesoderm Skeletal muscle actinin alpha 2 Yflag
0
Mm Hs TNNC2 0 0 0 0.003 0 1 Myocytes Mesoderm Skeletal muscle troponin C2, fast skeletal type flag
0
Mm Hs TNNC1 0.005 0 0 0.001 0 2 Myocytes Mesoderm Skeletal muscle TNNC troponin C1, slow skeletal and cardiac type Yflag
0
Mm Hs TNNT3 0.001 0 0 0 0 1 Myocytes Mesoderm Skeletal muscle DKFZp779M2348 troponin T3, fast skeletal type Yflag
0
Mm Hs TNNT1 0.014 0 0 0.022 0 1 Myocytes Mesoderm Skeletal muscle ANM,STNT,TNTS,FLJ98147,MGC104241,NEM5 troponin T1, slow skeletal type Yflag
0
Mm Hs TNNI2 0.005 0 0 0.003 0 1 Myocytes Mesoderm Skeletal muscle troponin I2, fast skeletal type Yflag
0
Mm Hs TNNI1 0.009 0 0 0.009 0 3 Myocytes Mesoderm Skeletal muscle troponin I1, slow skeletal type flag
0
Mm Hs ACTA1 0.004 0 0.889 0.003 0.004 2 Myocytes Mesoderm Skeletal muscle NEM3,ACTA actin, alpha 1, skeletal muscle Yflag
0
Mm Hs FHL2 0.043 0 0.111 0.104 0.029 5 Myocytes Mesoderm Skeletal muscle SLIM3,DRAL four and a half LIM domains 2 flag
0
Mm Hs ARHGAP26 0.016 0 0 0.011 0.018 2 Myocytes Mesoderm Skeletal muscle GRAF,KIAA0621,OPHN1L,OPHN1L1 Rho GTPase activating protein 26 Yflag
0
Mm Hs PAX7 0.001 0 0 0.001 0.001 5 Myocytes Mesoderm Skeletal muscle Hup1 paired box 7 Yflag
0
Mm Hs PAX3 0.004 0 0 0.004 0.004 4 Myocytes Mesoderm Skeletal muscle HUP2,WS1 paired box 3 Yflag
0
Mm Hs SIX4 0.001 0 0 0 0 1 Myocytes Mesoderm Skeletal muscle AREC3 SIX homeobox 4 flag
0
Mm Hs SIX1 0.014 0 0 0.027 0 3 Myocytes Mesoderm Skeletal muscle DFNA23 SIX homeobox 1 Yflag
0
Mm Hs MYOG 0.002 0 0.333 0 0.001 2 Myocytes Mesoderm Skeletal muscle bHLHc3,MYF4 myogenin flag
0
Mm Hs MYOD1 0.004 0 0.444 0.001 0.003 3 Myocytes Mesoderm Skeletal muscle MYOD,bHLHc1,MYF3 myogenic differentiation 1 flag
0
Mm Hs MYF6 0 0 0.222 0 0 3 Myocytes Mesoderm Skeletal muscle MRF4,bHLHc4 myogenic factor 6 Yflag
0
Mm Hs MYF5 0.001 0 0 0 0.002 3 Myocytes Mesoderm Skeletal muscle bHLHc2 myogenic factor 5 flag
0
Mm Hs TTN 0.007 0 0 0.011 0 3 Myocytes Mesoderm Skeletal muscle CMPD4,FLJ32040,TMD,CMH9,LGMD2J,MYLK5,CMD1G titin Yflag
0
Mm Hs TPM2 0.075 0 0 0.147 0 5 Myocytes Mesoderm Skeletal muscle NEM4,AMCD1 tropomyosin 2 Yflag
0
Mm Hs TMOD4 0 0 0 0 0 1 Myocytes Mesoderm Skeletal muscle Sk-Tmod tropomodulin 4 flag
0
Mm Hs NID2 0.001 0 0 0 0.001 1 Myocytes Mesoderm Skeletal muscle nidogen 2 flag
0
Mm Hs NID1 0.057 0 0 0.018 0.068 1 Myocytes Mesoderm Skeletal muscle entactin,NID nidogen 1 flag
0
Mm Hs NEB 0.004 0 0.444 0.001 0.003 1 Myocytes Mesoderm Skeletal muscle NEB177D,NEM2 nebulin Yflag
0
Mm Hs NBR1 0.026 0 0.222 0.046 0.023 1 Myocytes Mesoderm Skeletal muscle KIAA0049,1A1-3B,M17S2 NBR1, autophagy cargo receptor flag
0
Mm Hs MYH8 0 0 0.111 0 0 1 Myocytes Mesoderm Skeletal muscle MyHC-peri,MyHC-pn myosin heavy chain 8 Yflag
0
Mm Hs MYH7 0.001 0 0.111 0 0.002 2 Myocytes Mesoderm Skeletal muscle CMD1S,CMH1,MPD1 myosin heavy chain 7 Yflag
0
Mm Hs MYH4 0 0 0.333 0 0 1 Myocytes Mesoderm Skeletal muscle MYH2B,MyHC-2B,MyHC-IIb myosin heavy chain 4 flag
0
Mm Hs MYH1 0 0 0.111 0 0 1 Myocytes Mesoderm Skeletal muscle MYHSA1,MYHa,MyHC-2X/D,MGC133384 myosin heavy chain 1 flag
0
Mm Hs ADAM12 0.007 0 0 0.006 0.008 3 Myocytes Mesoderm Skeletal muscle MCMPMltna,MLTN ADAM metallopeptidase domain 12 flag
-1
Mm Hs MMP2 0.045 0 0 0.068 0.039 4 Myocytes Mesoderm Skeletal muscle TBE-1,CLG4,CLG4A matrix metallopeptidase 2 Yflag
-1
Mm Hs PTK2 0.033 0 0 0.065 0.025 1 Myocytes Mesoderm Skeletal muscle FAK,FADK,FAK1,PPP1R71 protein tyrosine kinase 2 flag

Datasets with computationally identified Myocytes

SRA SRS tissue cluster cell type p-value FDR View
SRA851241 SRS4388158 Muscle 13 Myocytes 2.51E-11 2.06E-8 view data
SRA652805 SRS2870735 Kidney organoids 10 Myocytes 7.25E-13 1.41E-9 view data
SRA652805 SRS2870733 Kidney organoids 9 Myocytes 8.84E-11 7.82E-8 view data
SRA851241 SRS4388164 Muscle satellite cells 3 Myocytes 5.71E-7 3.01E-4 view data
SRA851241 SRS4388164 Muscle satellite cells 7 Myocytes 1.44E-8 1.01E-5 view data
SRA851241 SRS4388164 Muscle satellite cells 9 Myocytes 1.84E-13 1.95E-10 view data
SRA653146 SRS3044259 Muscle 15 Myocytes 1.86E-10 4.41E-8 view data
SRA802096 SRS4005009 Skin 18 Myocytes 5.65E-5 2.31E-2 view data
SRA653146 SRS3044258 Muscle 15 Myocytes 4.35E-12 1.16E-9 view data
SRA851241 SRS4388159 Muscle 12 Myocytes 5.10E-12 4.36E-9 view data
SRA868105 SRS4566017 Hind limb muscles 8 Myocytes 6.99E-12 5.54E-9 view data