Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for Neural stem/precursor cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
8
Mm Hs PBK 0.06 0 0.185 0.043 0.062 1 Neural stem/precursor cells Ectoderm Brain TOPK,FLJ14385,Nori-3,CT84 PDZ binding kinase flag
2
Mm Hs SOX1 0.002 0 0 0 0 1 Neural stem/precursor cells Ectoderm Brain SRY-box 1 flag
1
Mm Hs SP9 0.02 0 0 0.001 0 2 Neural stem/precursor cells Ectoderm Brain ZNF990 Sp9 transcription factor flag
1
Mm Hs HES5 0.036 0 0.222 0.001 0.042 3 Neural stem/precursor cells Ectoderm Brain bHLHb38 hes family bHLH transcription factor 5 flag
1
Mm Hs ARX 0.019 0 0.815 0.002 0.022 7 Neural stem/precursor cells Ectoderm Brain ISSX,CT121,EIEE1,MRXS1,PRTS,MRX76,MRX54,MRX43,MRX36,MRX29,MRX32,MRX33,MRX38,MRX87 aristaless related homeobox Yflag
1
Mm Hs EOMES 0.021 0 0 0.002 0.026 4 Neural stem/precursor cells Ectoderm Brain TBR2 eomesodermin flag
0
Mm Hs NXPH1 0.022 0 0.074 0 0.028 2 Neural stem/precursor cells Ectoderm Brain neurexophilin 1 flag
0
Mm DYNLT1C 0.008 0 0.074 0 0.011 2 Neural stem/precursor cells Ectoderm Brain dynein light chain Tctex-type 1C flag
0
Mm Hs BARHL2 0.004 0 0.074 0 0.005 3 Neural stem/precursor cells Ectoderm Brain BarH like homeobox 2 flag
0
Mm Hs LHX9 0.004 0 0.037 0.003 0.005 1 Neural stem/precursor cells Ectoderm Brain LIM homeobox 9 flag
0
Mm Hs SHOX2 0.006 0 0 0.003 0 2 Neural stem/precursor cells Ectoderm Brain SHOT,OG12X,OG12 short stature homeobox 2 flag
0
Mm Hs DBX1 0 0 0.074 0 0 1 Neural stem/precursor cells Ectoderm Brain developing brain homeobox 1 flag
0
Mm Hs DLL3 0.009 0 0.074 0.015 0.007 2 Neural stem/precursor cells Ectoderm Brain SCDO1 delta like canonical Notch ligand 3 Yflag
0
Mm Hs PITX2 0.01 0 0 0.011 0.009 5 Neural stem/precursor cells Ectoderm Brain IGDS,Brx1,Otlx2,IRID2,IHG2,RIEG,RIEG1,RGS paired like homeodomain 2 Yflag
0
Mm Hs OTX1 0 0 0 0 0 1 Neural stem/precursor cells Ectoderm Brain orthodenticle homeobox 1 flag
0
Mm Hs RND3 0.049 0 0 0.102 0 2 Neural stem/precursor cells Ectoderm Brain RhoE,Rho8,ARHE Rho family GTPase 3 flag
0
Mm Hs ASCL2 0.005 0 0 0.008 0.005 4 Neural stem/precursor cells Ectoderm Brain HASH2,bHLHa45 achaete-scute family bHLH transcription factor 2 flag
0
Mm Hs HOPX 0.033 0 0 0.092 0.022 10 Neural stem/precursor cells Ectoderm Brain LAGY,OB1,NECC1,SMAP31 HOP homeobox flag
0
Mm Hs NEUROD1 0.038 0 0.074 0.023 0.043 8 Neural stem/precursor cells Ectoderm Brain BETA2,BHF-1,NeuroD,bHLHa3,MODY6,NEUROD neuronal differentiation 1 Yflag
0
Mm Hs PRSS56 0.002 0 0 0 0.002 1 Neural stem/precursor cells Ectoderm Brain serine protease 56 Yflag
0
Mm Hs SOX9 0.086 0 0 0.032 0 8 Neural stem/precursor cells Ectoderm Brain SRA1,CMD1,CMPD1 SRY-box 9 Yflag
0
Mm Hs ALDOC 0.078 0 0.037 0.001 0.097 4 Neural stem/precursor cells Ectoderm Brain aldolase, fructose-bisphosphate C flag
0
Mm Hs APOE 0.343 0 0.296 0.133 0.39 4 Neural stem/precursor cells Ectoderm Brain AD2 apolipoprotein E Yflag
0
Mm Hs ID4 0.093 0 0.556 0.064 0.101 1 Neural stem/precursor cells Ectoderm Brain bHLHb27 inhibitor of DNA binding 4, HLH protein flag
0
Mm Hs SOX2 0.082 0 0 0.029 0 6 Neural stem/precursor cells Ectoderm Brain SRY-box 2 Yflag
0
Mm Hs DCX 0.112 0 0.704 0.017 0.135 2 Neural stem/precursor cells Ectoderm Brain SCLH,DC,LISX,DBCN,XLIS doublecortin Yflag
0
Mm Hs CCND2 0.232 0 0.926 0.096 0.261 1 Neural stem/precursor cells Ectoderm Brain cyclin D2 Yflag
0
Mm Hs S100A6 0.317 0 0 0.66 0 2 Neural stem/precursor cells Ectoderm Brain 2A9,PRA,CABP,CACY S100 calcium binding protein A6 flag
0
Mm Hs DLX2 0.031 0 0.926 0.007 0.036 3 Neural stem/precursor cells Ectoderm Brain TES-1 distal-less homeobox 2 flag
0
Mm Hs PROM1 0.021 0 0 0.007 0.024 6 Neural stem/precursor cells Ectoderm Brain AC133,CD133,RP41,CORD12,PROML1,STGD4 prominin 1 Yflag
0
Mm Hs IGF1R 0.076 0 0.074 0.048 0.081 1 Neural stem/precursor cells Ectoderm Brain JTK13,CD221,IGFIR,MGC18216,IGFR insulin like growth factor 1 receptor Yflag
0
Mm Hs SP8 0.007 0 0 0 0 2 Neural stem/precursor cells Ectoderm Brain Sp8 transcription factor flag
0
Mm Hs GFAP 0.013 0 0 0.006 0.015 11 Neural stem/precursor cells Ectoderm Brain FLJ45472 glial fibrillary acidic protein Yflag
0
Mm Hs RBM3 0.127 0 0 0.517 0 1 Neural stem/precursor cells Ectoderm Brain IS1-RNPL RNA binding motif protein 3 flag
0
Mm Hs SOX3 0.002 0 0 0.005 0 1 Neural stem/precursor cells Ectoderm Brain PHP SRY-box 3 Yflag
0
Mm Hs S100B 0.066 0 0 0.033 0 8 Neural stem/precursor cells Ectoderm Brain S100beta S100 calcium binding protein B flag
0
Mm Hs SLC1A3 0.074 0 0 0.011 0 6 Neural stem/precursor cells Ectoderm Brain EAAT1,GLAST,EA6 solute carrier family 1 member 3 Yflag
0
Mm Hs NEUROG1 0.001 0 0.074 0.001 0.001 2 Neural stem/precursor cells Ectoderm Brain AKA,Math4C,ngn1,bHLHa6,NEUROD3 neurogenin 1 flag
0
Mm Hs NEUROG2 0.016 0 0.074 0.001 0.02 3 Neural stem/precursor cells Ectoderm Brain Atoh4,Math4A,ngn-2,bHLHa8,NGN2 neurogenin 2 flag
0
Mm Hs NHLH1 0.002 0 0 0.003 0.001 1 Neural stem/precursor cells Ectoderm Brain NSCL,NSCL1,bHLHa35 nescient helix-loop-helix 1 flag
0
Mm Hs PPP1R17 0.002 0 0 0.002 0.001 1 Neural stem/precursor cells Ectoderm Brain GSBS,C7orf16 protein phosphatase 1 regulatory subunit 17 Yflag
0
Mm Hs TMTC4 0.006 0 0 0.005 0 1 Neural stem/precursor cells Ectoderm Brain FLJ14624,FLJ22153 transmembrane and tetratricopeptide repeat containing 4 flag
0
Mm Hs PLEKHH2 0.003 0 0 0.006 0.003 2 Neural stem/precursor cells Ectoderm Brain KIAA2028,PLEKHH1L pleckstrin homology, MyTH4 and FERM domain containing H2 flag
0
Mm Hs TLR3 0.003 0 0 0.007 0 3 Neural stem/precursor cells Ectoderm Brain CD283 toll like receptor 3 Yflag
0
Mm Hs PARP12 0.005 0 0 0.007 0.005 1 Neural stem/precursor cells Ectoderm Brain FLJ22693,PARP-12,ZC3H1,ZC3HDC1 poly(ADP-ribose) polymerase family member 12 flag
0
Mm Hs P2RX7 0.004 0 0 0.009 0.003 8 Neural stem/precursor cells Ectoderm Brain P2X7,MGC20089 purinergic receptor P2X 7 flag
0
Mm Hs INAFM2 0.007 0 0 0.007 0.007 1 Neural stem/precursor cells Ectoderm Brain OGU1,LINC00984 InaF motif containing 2 flag
0
Mm Hs ISG15 0.061 0 0 0.13 0.04 1 Neural stem/precursor cells Ectoderm Brain IFI15,G1P2 ISG15 ubiquitin-like modifier Yflag
0
Mm Hs IGFBP3 0.031 0 0 0.059 0.026 4 Neural stem/precursor cells Ectoderm Brain IBP3,BP-53 insulin like growth factor binding protein 3 flag
0
Mm Hs IFIT1 0.015 0 0 0.016 0.013 2 Neural stem/precursor cells Ectoderm Brain GARG-16,G10P1,IFI56,IFNAI1 interferon induced protein with tetratricopeptide repeats 1 flag
0
Mm Hs IFI44 0.007 0 0 0.012 0.005 1 Neural stem/precursor cells Ectoderm Brain MTAP44,TLDC5 interferon induced protein 44 flag
0
Mm Hs MGAT5 0.046 0 0.037 0 0.055 1 Neural stem/precursor cells Ectoderm Brain GNT-V,MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase flag
0
Mm Hs CBX3 0.114 0 0.222 0.328 0.06 1 Neural stem/precursor cells Ectoderm Brain HP1Hs-gamma chromobox 3 flag
-1
Mm Hs TOX3 0.017 0 0 0.004 0 2 Neural stem/precursor cells Ectoderm Brain CAGF9,TNRC9 TOX high mobility group box family member 3 flag
-1
Mm Hs NEUROD4 0.006 0 0 0 0.008 2 Neural stem/precursor cells Ectoderm Brain Atoh3,ATH-3,MATH-3,bHLHa4 neuronal differentiation 4 flag
-1
Mm Hs POU3F4 0.004 0 0.556 0.002 0.004 2 Neural stem/precursor cells Ectoderm Brain BRN4,OTF9,DFNX2,DFN3 POU class 3 homeobox 4 Yflag
-1
Mm Hs DLX5 0.019 0 0.815 0.006 0.021 3 Neural stem/precursor cells Ectoderm Brain distal-less homeobox 5 Yflag
-2
Mm Hs DLX1 0.036 0 0.926 0 0.043 3 Neural stem/precursor cells Ectoderm Brain distal-less homeobox 1 flag

Datasets with computationally identified Neural stem/precursor cells

SRA SRS tissue cluster cell type p-value FDR View
SRA719240 SRS3404198 Subventricular zone 2 Neural stem/precursor cells 6.99E-5 1.83E-2 view data
SRA719240 SRS3404198 Subventricular zone 6 Neural stem/precursor cells 1.33E-4 3.11E-2 view data
SRA801396 SRS3999425 Diencephalon 4 Neural stem/precursor cells 3.90E-6 4.83E-3 view data
SRA801396 SRS3999425 Diencephalon 15 Neural stem/precursor cells 1.28E-5 1.19E-2 view data
SRA664819 SRS3026290 Subventricular zone 3 Neural stem/precursor cells 1.75E-4 2.22E-2 view data
SRA675945 SRS3100153 Hippocampus 17 Neural stem/precursor cells 1.86E-4 1.36E-2 view data
SRA664819 SRS3026289 Subventricular zone 5 Neural stem/precursor cells 8.12E-5 9.08E-3 view data
SRA578634 SRS2302660 Subventricular zone 2 Neural stem/precursor cells 1.20E-5 2.39E-3 view data
SRA578634 SRS2302660 Subventricular zone 3 Neural stem/precursor cells 2.56E-4 3.99E-2 view data
SRA611700 SRS2532370 Subcortex 6 Neural stem/precursor cells 7.01E-7 4.48E-4 view data
SRA611700 SRS2532370 Subcortex 7 Neural stem/precursor cells 1.28E-4 3.20E-2 view data
SRA611700 SRS2532370 Subcortex 8 Neural stem/precursor cells 1.03E-4 3.09E-2 view data
SRA611700 SRS2532370 Subcortex 11 Neural stem/precursor cells 1.16E-4 3.16E-2 view data
SRA664819 SRS3026282 Subventricular zone 3 Neural stem/precursor cells 3.92E-5 4.98E-3 view data
SRA611700 SRS2532371 Cortex 20 Neural stem/precursor cells 1.85E-5 2.26E-3 view data
SRA664819 SRS3026285 Subventricular zone 4 Neural stem/precursor cells 6.92E-5 9.69E-3 view data
SRA526435 SRS1915189 Cortex, hippocampus and subventricular zone 20 Neural stem/precursor cells 1.70E-5 1.13E-2 view data
SRA719240 SRS3404199 Subventricular zone 1 Neural stem/precursor cells 1.44E-5 5.06E-3 view data
SRA719240 SRS3404199 Subventricular zone 6 Neural stem/precursor cells 1.38E-5 5.06E-3 view data
SRA852206 SRS4405221 Sub-ventricular zone 7 Neural stem/precursor cells 2.01E-5 3.22E-3 view data
SRA526435 SRS1915160 Cortex, hippocampus and subventricular zone 20 Neural stem/precursor cells 2.05E-5 1.23E-2 view data
SRA611700 SRS2532369 Cortex 12 Neural stem/precursor cells 2.64E-6 4.19E-3 view data
SRA664819 SRS3026286 Subventricular zone 7 Neural stem/precursor cells 4.46E-5 6.38E-3 view data
SRA675945 SRS3100152 Hippocampus 24 Neural stem/precursor cells 4.41E-4 2.99E-2 view data
SRA526435 SRS1915130 Cortex, hippocampus and subventricular zone 19 Neural stem/precursor cells 3.71E-6 3.48E-3 view data
SRA611700 SRS2532367 Caudal ganglionic eminence 10 Neural stem/precursor cells 2.27E-5 4.22E-2 view data
SRA611700 SRS2532368 Medial ganglionic eminence 7 Neural stem/precursor cells 2.02E-6 6.74E-3 view data