Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for Neuroendocrine cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
1
Mm Hs NKX2-2 0.002 0 0 0.01 0.001 6 Neuroendocrine cells Ectoderm Brain NKX2.2,NKX2B NK2 homeobox 2 flag
1
Mm Hs NPY 0.015 0 0.207 0.006 0.016 6 Neuroendocrine cells Ectoderm Brain PYY4 neuropeptide Y flag
1
Mm Hs GPR88 0.006 0 0.638 0 0.005 1 Neuroendocrine cells Ectoderm Brain G protein-coupled receptor 88 flag
1
Mm Hs CCDC85C 0.007 0 0.086 0 0.008 1 Neuroendocrine cells Ectoderm Brain coiled-coil domain containing 85C flag
1
Mm Hs TAC1 0.01 0 0 0.005 0 6 Neuroendocrine cells Ectoderm Brain NPK,TAC2,NKNA tachykinin precursor 1 flag
1
Mm Hs PENK 0.02 0 0.31 0.028 0.019 5 Neuroendocrine cells Ectoderm Brain proenkephalin flag
1
Mm Hs DPF1 0.016 0 0.121 0.002 0.018 1 Neuroendocrine cells Ectoderm Brain neuro-d4,NEUD4,BAF45b double PHD fingers 1 flag
1
Mm Hs PRSS12 0.003 0 0 0.005 0.003 1 Neuroendocrine cells Ectoderm Brain BSSP-3,MRT1 serine protease 12 Yflag
1
Mm Hs SERPINI1 0.023 0 0 0.024 0 1 Neuroendocrine cells Ectoderm Brain PI12 serpin family I member 1 Yflag
0
Mm Hs CCK 0.033 0 0.138 0.003 0.038 7 Neuroendocrine cells Ectoderm Brain cholecystokinin flag
0
Mm Hs ARHGDIG 0.038 0 0.31 0.003 0.046 2 Neuroendocrine cells Ectoderm Brain RHOGDI-3 Rho GDP dissociation inhibitor gamma flag
0
Mm Hs DUSP26 0.04 0 0.103 0.012 0.048 2 Neuroendocrine cells Ectoderm Brain MGC1136 dual specificity phosphatase 26 flag
0
Mm Hs NEGR1 0.034 0 0.224 0.004 0.042 1 Neuroendocrine cells Ectoderm Brain KILON,MGC46680,Ntra,IGLON4 neuronal growth regulator 1 flag
0
Mm Hs SPOCK1 0.025 0 0 0.018 0 2 Neuroendocrine cells Ectoderm Brain testican-1,TIC1,SPOCK SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 flag
0
Mm Hs ABHD2 0.06 0 0.155 0.042 0.065 2 Neuroendocrine cells Ectoderm Brain LABH2 abhydrolase domain containing 2 flag
0
Mm Hs SST 0.027 0 0 0.048 0 5 Neuroendocrine cells Ectoderm Brain SMST somatostatin flag
0
Mm Hs SCN2B 0.035 0 0 0.001 0 3 Neuroendocrine cells Ectoderm Brain sodium voltage-gated channel beta subunit 2 Yflag
0
Mm Hs NRGN 0.031 0 0.466 0.011 0.033 6 Neuroendocrine cells Ectoderm Brain neurogranin flag
0
Mm Hs CXCL14 0.049 0 0.31 0.043 0.047 5 Neuroendocrine cells Ectoderm Brain BRAK,NJAC,bolekine,Kec,MIP-2g,BMAC,SCYB14 C-X-C motif chemokine ligand 14 flag
0
Mm Hs PPP1R1B 0.026 0 0.69 0.016 0.026 3 Neuroendocrine cells Ectoderm Brain DARPP-32,FLJ20940 protein phosphatase 1 regulatory inhibitor subunit 1B flag
0
Mm Hs PDE10A 0.024 0 0.69 0.003 0.028 2 Neuroendocrine cells Ectoderm Brain phosphodiesterase 10A Yflag
0
Mm Hs ATXN1 0.033 0 0.172 0.008 0.039 1 Neuroendocrine cells Ectoderm Brain D6S504E,ATX1,SCA1 ataxin 1 Yflag
0
Mm Hs SFXN5 0.023 0 0 0.007 0 1 Neuroendocrine cells Ectoderm Brain BBG-TCC,SLC56A5 sideroflexin 5 flag
0
Mm Hs GRM5 0.033 0 0.759 0 0.039 4 Neuroendocrine cells Ectoderm Brain MGLUR5,GPRC1E,mGlu5,PPP1R86 glutamate metabotropic receptor 5 flag
0
Mm Hs FXYD7 0.024 0 0.259 0.001 0.029 2 Neuroendocrine cells Ectoderm Brain FXYD domain containing ion transport regulator 7 flag
0
Mm Hs MKL2 0.035 0 0.155 0.006 0.042 2 Neuroendocrine cells Ectoderm Brain MKL/myocardin-like 2 flag
0
Mm Hs CLASP2 0.064 0 0.121 0.013 0.077 1 Neuroendocrine cells Ectoderm Brain KIAA0627 cytoplasmic linker associated protein 2 flag

Datasets with computationally identified Neuroendocrine cells

SRA SRS tissue cluster cell type p-value FDR View
SRA667466 SRS3059998 Hypothalamus 11 Neuroendocrine cells 4.37E-5 5.24E-3 view data
SRA850958 SRS4386115 Bed nucleus of the stria terminalis 2 Neuroendocrine cells 6.70E-5 1.58E-2 view data
SRA675945 SRS3100155 Hippocampus 35 Neuroendocrine cells 1.78E-5 1.75E-3 view data
SRA611700 SRS2532373 Subcortex 0 Neuroendocrine cells 5.98E-30 9.53E-27 view data
SRA611700 SRS2532373 Subcortex 1 Neuroendocrine cells 3.75E-11 1.99E-8 view data
SRA611700 SRS2532373 Subcortex 2 Neuroendocrine cells 7.36E-10 2.93E-7 view data
SRA611700 SRS2532373 Subcortex 3 Neuroendocrine cells 6.56E-8 1.90E-5 view data
SRA611700 SRS2532373 Subcortex 4 Neuroendocrine cells 4.10E-5 9.34E-3 view data
SRA611700 SRS2532373 Subcortex 6 Neuroendocrine cells 2.21E-4 3.92E-2 view data
SRA611700 SRS2532373 Subcortex 7 Neuroendocrine cells 1.42E-9 4.51E-7 view data
SRA611700 SRS2532373 Subcortex 9 Neuroendocrine cells 1.61E-4 3.02E-2 view data
SRA611700 SRS2532373 Subcortex 11 Neuroendocrine cells 5.12E-32 1.63E-28 view data
SRA611700 SRS2532373 Subcortex 12 Neuroendocrine cells 5.18E-12 3.30E-9 view data
SRA611700 SRS2532373 Subcortex 13 Neuroendocrine cells 2.93E-5 7.18E-3 view data
SRA611700 SRS2532373 Subcortex 15 Neuroendocrine cells 8.28E-10 2.93E-7 view data
SRA611700 SRS2532373 Subcortex 17 Neuroendocrine cells 1.60E-10 7.26E-8 view data
SRA664819 SRS3026289 Subventricular zone 7 Neuroendocrine cells 2.34E-7 3.83E-5 view data
SRA611700 SRS2532370 Subcortex 4 Neuroendocrine cells 1.54E-6 7.68E-4 view data
SRA611700 SRS2532371 Cortex 1 Neuroendocrine cells 4.35E-9 1.72E-6 view data
SRA611700 SRS2532371 Cortex 2 Neuroendocrine cells 5.38E-5 6.01E-3 view data
SRA611700 SRS2532371 Cortex 7 Neuroendocrine cells 2.33E-6 4.27E-4 view data
SRA611700 SRS2532371 Cortex 9 Neuroendocrine cells 1.04E-9 5.35E-7 view data
SRA611700 SRS2532371 Cortex 13 Neuroendocrine cells 7.28E-8 2.20E-5 view data
SRA611700 SRS2532371 Cortex 14 Neuroendocrine cells 3.88E-6 6.12E-4 view data
SRA611700 SRS2532371 Cortex 15 Neuroendocrine cells 9.31E-6 1.29E-3 view data
SRA611700 SRS2532371 Cortex 16 Neuroendocrine cells 3.66E-6 6.06E-4 view data
SRA611700 SRS2532371 Cortex 18 Neuroendocrine cells 1.39E-13 2.39E-10 view data
SRA611700 SRS2532371 Cortex 19 Neuroendocrine cells 1.79E-6 3.53E-4 view data
SRA611700 SRS2532371 Cortex 24 Neuroendocrine cells 1.23E-4 1.21E-2 view data
SRA667466 SRS3060053 Amygdala 3 Neuroendocrine cells 1.49E-4 2.60E-2 view data
SRA667466 SRS3059981 Hypothalamus 8 Neuroendocrine cells 7.86E-7 1.39E-4 view data
SRA667466 SRS3059999 Hypothalamus 10 Neuroendocrine cells 6.63E-5 6.98E-3 view data
SRA664819 SRS3026287 Subventricular zone 0 Neuroendocrine cells 6.39E-5 1.26E-2 view data
SRA664819 SRS3026287 Subventricular zone 1 Neuroendocrine cells 5.48E-5 1.21E-2 view data
SRA850958 SRS4386114 Bed nucleus of the stria terminalis 3 Neuroendocrine cells 2.17E-8 4.52E-6 view data
SRA667466 SRS3060066 Ventral striatum 0 Neuroendocrine cells 1.49E-4 1.87E-2 view data
SRA667466 SRS3060066 Ventral striatum 2 Neuroendocrine cells 1.28E-4 1.68E-2 view data
SRA667466 SRS3060066 Ventral striatum 5 Neuroendocrine cells 5.58E-5 7.89E-3 view data
SRA667466 SRS3060066 Ventral striatum 26 Neuroendocrine cells 2.97E-7 6.74E-5 view data
SRA667466 SRS3059961 Ventral striatum 1 Neuroendocrine cells 2.09E-4 2.43E-2 view data
SRA667466 SRS3059961 Ventral striatum 2 Neuroendocrine cells 1.21E-4 1.45E-2 view data
SRA667466 SRS3059961 Ventral striatum 6 Neuroendocrine cells 6.78E-5 9.46E-3 view data
SRA667466 SRS3059961 Ventral striatum 13 Neuroendocrine cells 2.98E-4 3.20E-2 view data
SRA667466 SRS3059961 Ventral striatum 18 Neuroendocrine cells 6.46E-7 1.59E-4 view data
SRA664819 SRS3026288 Subventricular zone 0 Neuroendocrine cells 1.50E-5 2.90E-3 view data
SRA664819 SRS3026288 Subventricular zone 1 Neuroendocrine cells 3.95E-5 6.95E-3 view data
SRA856483 SRS4457870 Visual cortex 8 Neuroendocrine cells 8.91E-11 1.49E-8 view data
SRA667466 SRS3059980 Hypothalamus 9 Neuroendocrine cells 3.50E-5 4.28E-3 view data
SRA667466 SRS3060007 Amygdala 2 Neuroendocrine cells 1.00E-5 1.23E-3 view data
SRA667466 SRS3060000 Amygdala 4 Neuroendocrine cells 2.39E-4 3.42E-2 view data
SRA667466 SRS3060000 Amygdala 9 Neuroendocrine cells 7.79E-7 2.54E-4 view data
SRA667466 SRS3060052 Amygdala 2 Neuroendocrine cells 7.77E-6 1.21E-3 view data
SRA667466 SRS3059975 Dorsal striatum 2 Neuroendocrine cells 6.61E-7 8.44E-5 view data
SRA675945 SRS3100152 Hippocampus 21 Neuroendocrine cells 1.18E-5 1.10E-3 view data
SRA667466 SRS3060067 Olfactory bulb 15 Neuroendocrine cells 1.43E-6 2.98E-4 view data
SRA667466 SRS3059948 Neo-cortex 5 Neuroendocrine cells 1.64E-5 1.70E-3 view data
SRA694785 SRS3214442 Preoptic region of the hypothalamus 17 Neuroendocrine cells 4.02E-4 2.95E-2 view data
SRA644036 SRS2808714 Cervical and lumbar spinal cord 8 Neuroendocrine cells 5.53E-5 3.37E-3 view data