Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for Osteoblasts

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
2
Mm Hs FGFR1 0.072 0 0.649 0.059 0.072 2 Osteoblasts Mesoderm Bone CEK,FLG,BFGFR,N-SAM,CD331,FLT2,KAL2 fibroblast growth factor receptor 1 Yflag
0
Mm Hs CX3CL1 0.033 0 0 0.006 0.04 1 Osteoblasts Mesoderm Bone C3Xkine,ABCD-3,CXC3C,CXC3,fractalkine,neurotactin,SCYD1 C-X3-C motif chemokine ligand 1 flag
0
Mm Hs VDR 0.011 0 0 0.003 0 8 Osteoblasts Mesoderm Bone NR1I1,PPP1R163 vitamin D receptor Yflag
0
Mm Hs F2R 0.036 0 0 0.034 0.038 2 Osteoblasts Mesoderm Bone CF2R coagulation factor II thrombin receptor flag
0
Mm Hs PTH1R 0.019 0 0.865 0.005 0.021 5 Osteoblasts Mesoderm Bone PTHR1 parathyroid hormone 1 receptor Yflag
0
Mm Hs ITGA2 0.01 0 0.027 0.045 0.003 6 Osteoblasts Mesoderm Bone CD49b,CD49B integrin subunit alpha 2 Yflag
0
Mm Hs ITGA5 0.016 0 0 0.018 0.017 3 Osteoblasts Mesoderm Bone CD49e,FNRA integrin subunit alpha 5 flag
0
Mm Hs NOD1 0 0 0 0 0 1 Osteoblasts Mesoderm Bone NLRC1,CLR7.1,CARD4 nucleotide binding oligomerization domain containing 1 flag
0
Mm Hs THY1 0.095 0 0 0.032 0 7 Osteoblasts Mesoderm Bone CD90 Thy-1 cell surface antigen flag
0
Mm Hs ESR1 0.004 0 0 0.001 0.005 3 Osteoblasts Mesoderm Bone NR3A1,Era,ER-alpha,ESR estrogen receptor 1 Yflag
0
Mm Hs P2RX4 0.025 0 0 0.013 0.029 1 Osteoblasts Mesoderm Bone P2X4 purinergic receptor P2X 4 flag
0
Mm Hs P2RX5 0 0 0 0.002 0 5 Osteoblasts Mesoderm Bone P2X5 purinergic receptor P2X 5 flag
0
Mm Hs INSR 0.022 0 0 0.063 0.013 1 Osteoblasts Mesoderm Bone CD220 insulin receptor Yflag
0
Mm Hs EFNB2 0.016 0 0 0.029 0.014 4 Osteoblasts Mesoderm Bone LERK5,Htk-L,HTKL,MGC126226,MGC126227,MGC126228,EPLG5 ephrin B2 flag
0
Mm Hs EPHB4 0.009 0 0 0.01 0.009 1 Osteoblasts Mesoderm Bone Tyro11,HTK EPH receptor B4 flag
0
Mm Hs VCAM1 0.041 0 0 0.007 0 6 Osteoblasts Mesoderm Bone CD106 vascular cell adhesion molecule 1 flag
0
Mm Hs FGFR2 0.034 0 0.27 0.016 0.038 3 Osteoblasts Mesoderm Bone CEK3,TK14,TK25,ECT1,K-SAM,CD332,KGFR,BEK,JWS fibroblast growth factor receptor 2 Yflag
0
Mm Hs CALB1 0.019 0 0 0.001 0.024 6 Osteoblasts Mesoderm Bone CALB calbindin 1 flag
0
Mm Hs COL11A1 0.009 0 0.757 0.01 0.007 3 Osteoblasts Mesoderm Bone STL2,CO11A1,COLL6 collagen type XI alpha 1 chain Yflag
0
Mm Hs COL11A2 0.005 0 0.676 0.003 0.005 1 Osteoblasts Mesoderm Bone HKE5,DFNA13,DFNB53 collagen type XI alpha 2 chain Yflag
0
Mm Hs POSTN 0.033 0 0.486 0.023 0.034 5 Osteoblasts Mesoderm Bone OSF-2,PN,periostin periostin flag
0
Mm Hs SFRP4 0.006 0 0 0.007 0 2 Osteoblasts Mesoderm Bone frpHE,FRP-4,FRPHE,FRZB-2 secreted frizzled related protein 4 flag
0
Mm Hs BMP1 0.024 0 0.865 0.01 0.026 1 Osteoblasts Mesoderm Bone PCOLC bone morphogenetic protein 1 Yflag
0
Mm Hs OLFML2B 0.011 0 0.378 0.01 0.01 1 Osteoblasts Mesoderm Bone DKFZP586L151 olfactomedin like 2B flag
0
Mm Hs COL12A1 0.013 0 0.459 0.006 0.012 3 Osteoblasts Mesoderm Bone COL12A1L collagen type XII alpha 1 chain Yflag
0
Mm Hs WISP2 0.005 0 0 0.007 0 2 Osteoblasts Mesoderm Bone CTGF-L,CCN5 WNT1 inducible signaling pathway protein 2 flag
0
Mm Hs SP7 0.001 0 0 0 0 2 Osteoblasts Mesoderm Bone osterix,OSX Sp7 transcription factor Yflag
0
Mm Hs PENK 0.02 0 0 0.028 0.02 5 Osteoblasts Mesoderm Bone proenkephalin flag
0
Mm Hs NPNT 0.017 0 0.027 0.009 0.019 2 Osteoblasts Mesoderm Bone EGFL6L,POEM nephronectin flag
0
Hs TNFRSF10A 0.001 0 0 0.005 0 1 Osteoblasts Mesoderm Bone DR4,Apo2,TRAILR-1,CD261,TRAILR1 TNF receptor superfamily member 10a flag
0
Mm Hs SLC6A6 0.102 0 0 0.001 0 2 Osteoblasts Mesoderm Bone TAUT solute carrier family 6 member 6 flag
0
Mm Hs EGFL6 0.01 0 0 0.008 0.011 3 Osteoblasts Mesoderm Bone MAEG EGF like domain multiple 6 flag
0
Mm Hs MMP13 0.003 0 0.568 0 0.002 3 Osteoblasts Mesoderm Bone CLG3 matrix metallopeptidase 13 Yflag
0
Mm Hs GPER1 0.01 0 0 0.002 0.013 1 Osteoblasts Mesoderm Bone FEG-1,GPCR-Br,LERGU,LERGU2,DRY12,LyGPR,CEPR,CMKRL2,GPR30,GPER G protein-coupled estrogen receptor 1 flag
0
Mm Hs RUNX2 0.008 0 0 0.009 0 3 Osteoblasts Mesoderm Bone AML3,PEBP2A1,PEBP2aA1,CCD,CBFA1,CCD1 runt related transcription factor 2 Yflag
0
Mm Hs NF2 0.016 0 0 0.044 0.008 4 Osteoblasts Mesoderm Bone merlin,ACN,SCH,BANF neurofibromin 2 Yflag
0
Mm Hs LRP5 0.003 0 0.108 0.003 0.003 3 Osteoblasts Mesoderm Bone LR3,BMND1,HBM,OPS,OPTA1,VBCH2,EVR4,LRP7,OPPG LDL receptor related protein 5 Yflag
0
Mm Hs PHEX 0.001 0 0.324 0.001 0 1 Osteoblasts Mesoderm Bone PEX,HPDR1,HYP1,XLH,HYP,HPDR phosphate regulating endopeptidase homolog X-linked Yflag
0
Mm Hs HIF1A 0.089 0 0.216 0.102 0.085 4 Osteoblasts Mesoderm Bone MOP1,HIF-1alpha,PASD8,HIF1,bHLHe78 hypoxia inducible factor 1 subunit alpha flag
0
Mm Hs C5AR1 0.027 0 0 0.014 0.03 5 Osteoblasts Mesoderm Bone C5A,C5AR,CD88,C5R1 complement C5a receptor 1 flag
0
Mm Hs CXCL12 0.07 0 0.541 0.027 0.08 3 Osteoblasts Mesoderm Bone SCYB12,SDF-1a,SDF-1b,PBSF,TLSF-a,TLSF-b,TPAR1,SDF1A,SDF1B,SDF1 C-X-C motif chemokine ligand 12 Yflag
0
Mm Hs COL1A1 0.081 0 1 0.1 0.071 6 Osteoblasts Mesoderm Bone collagen type I alpha 1 chain Yflag
0
Mm Hs FOXO1 0.022 0 0.054 0.008 0.026 1 Osteoblasts Mesoderm Bone FKH1,FKHR,FOXO1A forkhead box O1 Yflag
0
Mm Hs IL33 0.018 0 0 0.011 0.021 6 Osteoblasts Mesoderm Bone DVS27,DKFZp586H0523,NF-HEV,IL1F11,C9orf26 interleukin 33 flag
0
Mm Hs SOCS3 0.081 0 0 0.094 0 2 Osteoblasts Mesoderm Bone SSI-3,CIS3,SOCS-3,Cish3 suppressor of cytokine signaling 3 flag
0
Mm Hs MAGED1 0.334 0 0.73 0.085 0.396 1 Osteoblasts Mesoderm Bone NRAGE,DLXIN-1 MAGE family member D1 flag
0
Mm Hs WNT5A 0.015 0 0 0.008 0 3 Osteoblasts Mesoderm Bone hWNT5A Wnt family member 5A Yflag
0
Mm Hs FAS 0.011 0 0 0.015 0.011 4 Osteoblasts Mesoderm Bone CD95,APO-1,FAS1,APT1,TNFRSF6 Fas cell surface death receptor Yflag
0
Mm Hs CD44 0.127 0 0.189 0.3 0.088 9 Osteoblasts Mesoderm Bone IN,MC56,Pgp1,CD44R,HCELL,CSPG8,MIC4,MDU2,MDU3 CD44 molecule (Indian blood group) Yflag
0
Mm Hs SPP1 0.057 0 0 0.053 0 4 Osteoblasts Mesoderm Bone BSPI,ETA-1,BNSP,OPN secreted phosphoprotein 1 flag
0
Mm Hs CCL11 0.008 0 0 0.003 0.01 4 Osteoblasts Mesoderm Bone eotaxin,MGC22554,SCYA11 C-C motif chemokine ligand 11 Yflag
0
Mm Hs NLRP3 0.004 0 0 0.001 0.005 3 Osteoblasts Mesoderm Bone AGTAVPRL,AII,AVP,FCAS,FCU,NALP3,PYPAF1,MWS,CLR1.1,C1orf7,CIAS1 NLR family pyrin domain containing 3 Yflag
0
Mm Hs ALPL 0.009 0 0.73 0.004 0.009 5 Osteoblasts Mesoderm Bone TNSALP,TNALP,TNAP,HOPS alkaline phosphatase, liver/bone/kidney Yflag
-1
Mm Hs OLFML1 0.002 0 0 0 0.002 1 Osteoblasts Mesoderm Bone UNQ564 olfactomedin like 1 flag
-1
Mm Hs LRP4 0.046 0 0.784 0 0.056 1 Osteoblasts Mesoderm Bone MEGF7,CLSS,LRP-4,SOST2 LDL receptor related protein 4 Yflag
-1
Mm Hs TNFSF11 0.001 0 0 0 0 2 Osteoblasts Mesoderm Bone TRANCE,RANKL,OPGL,ODF,CD254 TNF superfamily member 11 Yflag
-1
Mm Hs NOD2 0 0 0 0 0 3 Osteoblasts Mesoderm Bone BLAU,PSORAS1,CLR16.3,NLRC2,IBD1,CARD15 nucleotide binding oligomerization domain containing 2 Yflag
-1
Mm Hs IBSP 0.006 0 1 0 0.005 1 Osteoblasts Mesoderm Bone BSP,SP-II,BSP-II integrin binding sialoprotein flag
-1
Mm Hs CYP27B1 0 0 0 0 0 2 Osteoblasts Mesoderm Bone P450c1,VDD1,PDDR cytochrome P450 family 27 subfamily B member 1 Yflag
-1
Mm BGLAP2 0.005 0 0.973 0 0.004 1 Osteoblasts Mesoderm Bone bone gamma-carboxyglutamate protein 2 flag
-1
Mm Hs PARD6G 0.018 0 0.568 0 0.022 1 Osteoblasts Mesoderm Bone PAR-6G,PAR6gamma par-6 family cell polarity regulator gamma flag
-1
Mm Hs TLR5 0 0 0 0 0 2 Osteoblasts Mesoderm Bone TIL3,MGC126430,MGC126431,SLEB1 toll like receptor 5 Yflag
-1
Mm Hs BGLAP 0.005 0 0.946 0 0.004 2 Osteoblasts Mesoderm Bone OCN bone gamma-carboxyglutamate protein Yflag
-1
Mm Hs PLCD4 0.004 0 0 0 0.005 1 Osteoblasts Mesoderm Bone phospholipase C delta 4 flag

Datasets with computationally identified Osteoblasts

SRA SRS tissue cluster cell type p-value FDR View
SRA645056 SRS2819412 Bone marrow 0 Osteoblasts 2.31E-4 3.08E-2 view data
SRA645056 SRS2819412 Bone marrow 2 Osteoblasts 7.87E-6 1.76E-3 view data
SRA645056 SRS2819412 Bone marrow 6 Osteoblasts 3.52E-9 1.18E-6 view data
SRA645056 SRS2819412 Bone marrow 9 Osteoblasts 1.39E-5 2.92E-3 view data
SRA797768 SRS3969076 Bone marrow mesenchymal and endothelial cells 1 Osteoblasts 6.72E-7 1.95E-4 view data
SRA797768 SRS3969076 Bone marrow mesenchymal and endothelial cells 6 Osteoblasts 3.78E-9 1.65E-6 view data
SRA797768 SRS3969076 Bone marrow mesenchymal and endothelial cells 7 Osteoblasts 2.72E-4 4.30E-2 view data
SRA797768 SRS4351136 Bone marrow mesenchymal and endothelial cells 0 Osteoblasts 2.98E-7 5.92E-5 view data
SRA797768 SRS4351136 Bone marrow mesenchymal and endothelial cells 1 Osteoblasts 2.38E-8 8.98E-6 view data
SRA797768 SRS4351136 Bone marrow mesenchymal and endothelial cells 3 Osteoblasts 5.88E-7 9.91E-5 view data
SRA797768 SRS4351136 Bone marrow mesenchymal and endothelial cells 5 Osteoblasts 6.00E-7 9.91E-5 view data
SRA797768 SRS4351136 Bone marrow mesenchymal and endothelial cells 6 Osteoblasts 1.39E-6 1.93E-4 view data
SRA797768 SRS4351136 Bone marrow mesenchymal and endothelial cells 7 Osteoblasts 1.19E-6 1.74E-4 view data
SRA797768 SRS4351136 Bone marrow mesenchymal and endothelial cells 9 Osteoblasts 2.38E-13 6.29E-10 view data
SRA797768 SRS4351136 Bone marrow mesenchymal and endothelial cells 10 Osteoblasts 2.00E-7 4.55E-5 view data
SRA797768 SRS4351136 Bone marrow mesenchymal and endothelial cells 13 Osteoblasts 3.30E-8 1.09E-5 view data
SRA815866 SRS4088856 Bone marrow 9 Osteoblasts 1.09E-10 6.73E-8 view data
SRA638923 SRS2797046 Bone marrow 1 Osteoblasts 2.06E-5 1.68E-2 view data
SRA645056 SRS2819418 Bone marrow 2 Osteoblasts 8.08E-7 1.96E-4 view data
SRA645056 SRS2819418 Bone marrow 4 Osteoblasts 2.67E-11 1.72E-8 view data
SRA645056 SRS2819418 Bone marrow 5 Osteoblasts 3.54E-12 3.42E-9 view data
SRA645056 SRS2819417 Bone marrow 2 Osteoblasts 3.54E-9 2.01E-6 view data
SRA645056 SRS2819417 Bone marrow 5 Osteoblasts 7.12E-5 8.06E-3 view data
SRA645056 SRS2819417 Bone marrow 7 Osteoblasts 2.22E-5 2.99E-3 view data
SRA645056 SRS2819417 Bone marrow 8 Osteoblasts 2.29E-7 4.62E-5 view data
SRA645056 SRS2819417 Bone marrow 10 Osteoblasts 1.94E-6 3.05E-4 view data
SRA645056 SRS2819417 Bone marrow 13 Osteoblasts 1.03E-5 1.46E-3 view data
SRA645056 SRS2819415 Bone marrow 2 Osteoblasts 5.05E-5 8.89E-3 view data
SRA645056 SRS2819415 Bone marrow 3 Osteoblasts 2.55E-6 6.94E-4 view data
SRA645056 SRS2819415 Bone marrow 4 Osteoblasts 6.52E-6 1.40E-3 view data
SRA645056 SRS2819415 Bone marrow 9 Osteoblasts 1.46E-9 1.09E-6 view data
SRA645056 SRS2819415 Bone marrow 13 Osteoblasts 3.33E-6 8.30E-4 view data
SRA645056 SRS2819414 Bone marrow 4 Osteoblasts 2.30E-10 1.22E-7 view data
SRA645056 SRS2819414 Bone marrow 5 Osteoblasts 1.65E-7 4.88E-5 view data
SRA645056 SRS2819414 Bone marrow 10 Osteoblasts 4.17E-10 1.84E-7 view data
SRA645056 SRS2819414 Bone marrow 11 Osteoblasts 3.56E-7 9.46E-5 view data
SRA645056 SRS2819414 Bone marrow 12 Osteoblasts 2.59E-6 5.29E-4 view data