This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).
Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CETVote(s) | Species | Official gene symbol | UI | Sensitivity (human) | Sensitivity (mouse) | Specificity (human) | Specificity (mouse) | Marker count | Cell type | Germ layer | Organ | Aliases | Product description | Disease | Action | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Mm Hs | MMP7 | 0.007 | 0 | 0.425 | 0.025 | 0.001 | 4 | Paneth cells | Endoderm | GI tract | PUMP-1,MPSL1 | matrix metallopeptidase 7 | flag | ||||
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Mm Hs | DEFA5 | 0.003 | 0 | 0.45 | 0.001 | 0.001 | 1 | Paneth cells | Endoderm | GI tract | HD-5,DEF5 | defensin alpha 5 | flag | ||||
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Mm | LYZ1 | 0.031 | 0 | 0.938 | 0 | 0.033 | 4 | Paneth cells | Endoderm | GI tract | lysozyme 1 | flag | |||||
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Mm | MPTX2 | 0.003 | 0 | 0.513 | 0 | 0.001 | 1 | Paneth cells | Endoderm | GI tract | mucosal pentraxin 2 | flag | |||||
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Mm Hs | ADIPOQ | 0.004 | 0 | 0 | 0 | 0.005 | 3 | Paneth cells | Endoderm | GI tract | ACRP30,AdipoQ,apM1,GBP28,adiponectin,ACDC | adiponectin, C1Q and collagen domain containing | Y | flag | |||
|
Hs | LYZ | 0.008 | 0 | 0 | 0.041 | 0 | 6 | Paneth cells | Endoderm | GI tract | lysozyme | Y | flag | ||||
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Hs | DEFA6 | 0 | 0 | 0 | 0 | 0 | 1 | Paneth cells | Endoderm | GI tract | HD-6,DEF6 | defensin alpha 6 | flag | ||||
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Mm Hs | WNT3 | 0.003 | 0 | 0 | 0.001 | 0 | 2 | Paneth cells | Endoderm | GI tract | MGC131950,MGC138321,MGC138323 | Wnt family member 3 | Y | flag | |||
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Mm Hs | KCNN4 | 0.027 | 0 | 0.125 | 0.01 | 0.029 | 3 | Paneth cells | Endoderm | GI tract | KCa3.1,hSK4,hKCa4,hIKCa1,IK | potassium calcium-activated channel subfamily N member 4 | Y | flag | |||
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Mm Hs | RAP1A | 0.314 | 0 | 0 | 0.17 | 0 | 1 | Paneth cells | Endoderm | GI tract | KREV-1,SMGP21 | RAP1A, member of RAS oncogene family | flag | ||||
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Mm Hs | TLR5 | 0 | 0 | 0 | 0 | 0 | 2 | Paneth cells | Endoderm | GI tract | TIL3,MGC126430,MGC126431,SLEB1 | toll like receptor 5 | Y | flag | |||
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Mm | DEFA20 | 0 | 0 | 0.1 | 0 | 0 | 1 | Paneth cells | Endoderm | GI tract | defensin, alpha, 20 | flag | |||||
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Mm Hs | ATG16L1 | 0.003 | 0 | 0 | 0.001 | 0.003 | 1 | Paneth cells | Endoderm | GI tract | WDR30,FLJ10035,ATG16A,APG16L,ATG16L | autophagy related 16 like 1 | Y | flag | |||
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Mm Hs | WNT9B | 0 | 0 | 0 | 0 | 0 | 1 | Paneth cells | Endoderm | GI tract | WNT14B,WNT15 | Wnt family member 9B | flag | ||||
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Mm Hs | DLL4 | 0.007 | 0 | 0 | 0.003 | 0.008 | 2 | Paneth cells | Endoderm | GI tract | delta like canonical Notch ligand 4 | Y | flag | ||||
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Hs | IL4R | 0.002 | 0 | 0 | 0.01 | 0 | 4 | Paneth cells | Endoderm | GI tract | CD124 | interleukin 4 receptor | Y | flag | |||
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Mm | IL4RA | 0.013 | 0 | 0.025 | 0 | 0.017 | 5 | Paneth cells | Endoderm | GI tract | interleukin 4 receptor, alpha | flag | |||||
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Mm Hs | TLR9 | 0 | 0 | 0 | 0 | 0 | 7 | Paneth cells | Endoderm | GI tract | CD289 | toll like receptor 9 | flag | ||||
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Mm Hs | CTNNB1 | 0.052 | 0 | 0 | 0.212 | 0.011 | 8 | Paneth cells | Endoderm | GI tract | beta-catenin,armadillo,CTNNB | catenin beta 1 | Y | flag | |||
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Mm Hs | TM4SF20 | 0.019 | 0 | 0 | 0.003 | 0 | 2 | Paneth cells | Endoderm | GI tract | FLJ22800,TCCE518 | transmembrane 4 L six family member 20 | Y | flag | |||
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Mm | DEFA23 | 0.003 | 0 | 0.575 | 0 | 0.001 | 1 | Paneth cells | Endoderm | GI tract | defensin, alpha, 23 | flag | |||||
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Mm Hs | DEFA3 | 0.002 | 0 | 0.4 | 0 | 0.001 | 2 | Paneth cells | Endoderm | GI tract | HNP-3 | defensin alpha 3 | flag | ||||
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Mm | DEFA26 | 0.003 | 0 | 0.55 | 0 | 0.001 | 1 | Paneth cells | Endoderm | GI tract | defensin, alpha, 26 | flag | |||||
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Mm | DEFA17 | 0.007 | 0 | 0.9 | 0 | 0.004 | 1 | Paneth cells | Endoderm | GI tract | defensin, alpha, 17 | flag | |||||
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Mm | DEFA21 | 0.007 | 0 | 0.713 | 0 | 0.006 | 1 | Paneth cells | Endoderm | GI tract | defensin, alpha, 21 | flag | |||||
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Mm | DEFA22 | 0.007 | 0 | 0.675 | 0 | 0.005 | 1 | Paneth cells | Endoderm | GI tract | defensin, alpha, 22 | flag | |||||
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Mm | DEFA24 | 0.017 | 0 | 1 | 0 | 0.017 | 2 | Paneth cells | Endoderm | GI tract | defensin, alpha, 24 | flag | |||||
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Mm Hs | MPTX1 | 0.001 | 0 | 0.025 | 0 | 0.001 | 1 | Paneth cells | Endoderm | GI tract | mucosal pentraxin 1 (pseudogene) | flag | |||||
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Mm Hs | KLF15 | 0.001 | 0 | 0 | 0 | 0.002 | 1 | Paneth cells | Endoderm | GI tract | KKLF | Kruppel like factor 15 | flag | ||||
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Mm Hs | RETNLB | 0.003 | 0 | 0 | 0.002 | 0 | 1 | Paneth cells | Endoderm | GI tract | HXCP2,FIZZ2,RELMb | resistin like beta | flag | ||||
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Mm Hs | CSF2 | 0.002 | 0 | 0 | 0.009 | 0.001 | 4 | Paneth cells | Endoderm | GI tract | GM-CSF,GMCSF | colony stimulating factor 2 | flag | ||||
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Mm Hs | PLA2G2A | 0.009 | 0 | 0.675 | 0.025 | 0.002 | 1 | Paneth cells | Endoderm | GI tract | PLA2B | phospholipase A2 group IIA | Y | flag | |||
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Mm Hs | PRSS1 | 0.002 | 0 | 0 | 0.01 | 0 | 2 | Paneth cells | Endoderm | GI tract | TRY1 | serine protease 1 | Y | flag | |||
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Mm Hs | GUCA2B | 0.019 | 0 | 0.863 | 0.008 | 0.018 | 1 | Paneth cells | Endoderm | GI tract | guanylate cyclase activator 2B | flag | |||||
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Mm | REG3B | 0.013 | NA | NA | NA | NA | 1 | Paneth cells | Endoderm | GI tract | regenerating islet-derived 3 beta | flag | |||||
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Mm Hs | MUC2 | 0.007 | 0 | 0.638 | 0.006 | 0.004 | 2 | Paneth cells | Endoderm | GI tract | mucin 2, oligomeric mucus/gel-forming | flag | |||||
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Mm Hs | CLCA1 | 0.003 | 0 | 0.138 | 0.002 | 0.003 | 2 | Paneth cells | Endoderm | GI tract | CaCC,CLCRG1 | chloride channel accessory 1 | flag | ||||
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Mm Hs | GUCA2A | 0.015 | 0 | 0.725 | 0.016 | 0.012 | 3 | Paneth cells | Endoderm | GI tract | STARA,GUCA2 | guanylate cyclase activator 2A | flag | ||||
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Hs | DEFA1 | 0 | 0 | 0 | 0 | 0 | 2 | Paneth cells | Endoderm | GI tract | HNP-1,DEF1,DEFA2 | defensin alpha 1 | flag | ||||
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Mm Hs | ITLN1 | 0.009 | 0 | 0.875 | 0.006 | 0.006 | 2 | Paneth cells | Endoderm | GI tract | ITLN,FLJ20022,LFR,HL-1,hIntL | intelectin 1 | flag | ||||
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Mm Hs | RIPK2 | 0.004 | 0 | 0 | 0.014 | 0 | 1 | Paneth cells | Endoderm | GI tract | RICK,CARDIAK,CARD3 | receptor interacting serine/threonine kinase 2 | flag | ||||
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Mm | ANG4 | 0.005 | 0 | 0.713 | 0 | 0.002 | 1 | Paneth cells | Endoderm | GI tract | angiogenin, ribonuclease A family, member 4 | flag | |||||
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Mm Hs | GPX2 | 0.04 | 0 | 0.738 | 0.048 | 0.034 | 1 | Paneth cells | Endoderm | GI tract | GSHPX-GI | glutathione peroxidase 2 | flag | ||||
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Mm Hs | LGALS2 | 0.032 | 0 | 0.863 | 0.038 | 0.027 | 5 | Paneth cells | Endoderm | GI tract | HL14 | galectin 2 | Y | flag | |||
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Mm Hs | SPINK4 | 0.014 | 0 | 0 | 0.006 | 0 | 2 | Paneth cells | Endoderm | GI tract | PEC-60,MGC133107 | serine peptidase inhibitor, Kazal type 4 | flag | ||||
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Mm Hs | FABP4 | 0.028 | 0 | 0 | 0.01 | 0.033 | 10 | Paneth cells | Endoderm | GI tract | A-FABP,aP2 | fatty acid binding protein 4 | flag | ||||
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Mm Hs | CFD | 0.018 | 0 | 0 | 0.099 | 0.001 | 4 | Paneth cells | Endoderm | GI tract | ADN,DF,PFD | complement factor D | Y | flag | |||
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Mm Hs | PNLIPRP2 | 0.003 | 0 | 0.313 | 0.002 | 0.002 | 1 | Paneth cells | Endoderm | GI tract | PLRP2 | pancreatic lipase related protein 2 (gene/pseudogene) | flag | ||||
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Mm Hs | DMBT1 | 0.01 | 0 | 0.238 | 0.003 | 0.01 | 3 | Paneth cells | Endoderm | GI tract | GP340,muclin,SALSA,Gp-340,hensin,vomeroglandin | deleted in malignant brain tumors 1 | flag | ||||
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Mm Hs | NOD2 | 0 | 0 | 0 | 0 | 0 | 3 | Paneth cells | Endoderm | GI tract | BLAU,PSORAS1,CLR16.3,NLRC2,IBD1,CARD15 | nucleotide binding oligomerization domain containing 2 | Y | flag | |||
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Mm Hs | AGR2 | 0.024 | 0 | 0.788 | 0.073 | 0.009 | 7 | Paneth cells | Endoderm | GI tract | XAG-2,HAG-2,PDIA17 | anterior gradient 2, protein disulphide isomerase family member | flag | ||||
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Mm Hs | DLL1 | 0.003 | 0 | 0 | 0.005 | 0.003 | 2 | Paneth cells | Endoderm | GI tract | delta like canonical Notch ligand 1 | flag | |||||
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Mm Hs | REG3G | 0.017 | 0 | 0 | 0.002 | 0 | 1 | Paneth cells | Endoderm | GI tract | UNQ429,LPPM429,PAP1B | regenerating family member 3 gamma | flag | ||||
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Mm Hs | LGR4 | 0.017 | 0 | 0.038 | 0.013 | 0.017 | 1 | Paneth cells | Endoderm | GI tract | GPR48 | leucine rich repeat containing G protein-coupled receptor 4 | Y | flag |
SRA | SRS | tissue | cluster | cell type | p-value | FDR | View |
---|---|---|---|---|---|---|---|
SRA628138 | SRS2659226 | Intestinal organoid epithelial cells | 11 | Paneth cells | 7.48E-7 | 9.71E-5 | view data |
SRA628138 | SRS2659229 | Intestinal organoid epithelial cells | 8 | Paneth cells | 1.00E-11 | 1.97E-9 | view data |
SRA638923 | SRS2797112 | Small intestine | 1 | Paneth cells | 2.79E-8 | 3.20E-6 | view data |
SRA638923 | SRS2797112 | Small intestine | 5 | Paneth cells | 2.70E-7 | 2.50E-5 | view data |
SRA638923 | SRS2797112 | Small intestine | 9 | Paneth cells | 4.93E-35 | 1.19E-31 | view data |
SRA638923 | SRS2797112 | Small intestine | 10 | Paneth cells | 9.89E-9 | 1.49E-6 | view data |
SRA638923 | SRS2797112 | Small intestine | 11 | Paneth cells | 1.37E-6 | 1.14E-4 | view data |
SRA638923 | SRS2797112 | Small intestine | 13 | Paneth cells | 8.82E-9 | 1.42E-6 | view data |
SRA508949 | SRS1876796 | Small intestine | 6 | Paneth cells | 1.14E-16 | 2.22E-14 | view data |
SRA508949 | SRS1876784 | Small intestine | 7 | Paneth cells | 8.51E-16 | 2.30E-13 | view data |
SRA508949 | SRS1876791 | Small intestine | 4 | Paneth cells | 2.23E-6 | 2.80E-4 | view data |
SRA508949 | SRS1876791 | Small intestine | 5 | Paneth cells | 2.50E-16 | 8.64E-14 | view data |
SRA877776 | SRS4655564 | Distal small intestine | 8 | Paneth cells | 1.29E-38 | 4.28E-36 | view data |
SRA628138 | SRS2659223 | Intestinal organoid epithelial cells | 5 | Paneth cells | 1.47E-4 | 1.68E-2 | view data |
SRA745734 | SRS3600976 | Intestinal epithelium | 6 | Paneth cells | 2.76E-12 | 2.51E-10 | view data |
SRA639854 | SRS2766803 | Intestinal crypt epithelium | 5 | Paneth cells | 3.00E-11 | 1.58E-8 | view data |
SRA628138 | SRS2659233 | Intestinal organoid epithelial cells | 4 | Paneth cells | 8.55E-13 | 3.35E-10 | view data |
SRA508949 | SRS1876787 | Small intestine | 4 | Paneth cells | 1.39E-16 | 3.85E-14 | view data |
SRA638923 | SRS2797114 | Small intestine | 4 | Paneth cells | 1.27E-38 | 1.28E-35 | view data |
SRA638923 | SRS2797111 | Small intestine | 1 | Paneth cells | 1.00E-4 | 9.92E-3 | view data |
SRA638923 | SRS2797111 | Small intestine | 2 | Paneth cells | 1.24E-38 | 5.79E-36 | view data |
SRA745734 | SRS3600974 | Intestinal epithelium | 0 | Paneth cells | 9.40E-23 | 2.34E-20 | view data |
SRA745734 | SRS3600974 | Intestinal epithelium | 3 | Paneth cells | 3.10E-25 | 9.27E-23 | view data |
SRA745734 | SRS3600974 | Intestinal epithelium | 7 | Paneth cells | 7.50E-27 | 2.81E-24 | view data |
SRA745734 | SRS3600974 | Intestinal epithelium | 8 | Paneth cells | 1.16E-37 | 8.65E-35 | view data |
SRA745734 | SRS3600974 | Intestinal epithelium | 11 | Paneth cells | 5.21E-26 | 1.73E-23 | view data |
SRA745734 | SRS3600974 | Intestinal epithelium | 13 | Paneth cells | 1.38E-20 | 2.95E-18 | view data |
SRA745734 | SRS3600974 | Intestinal epithelium | 14 | Paneth cells | 4.78E-17 | 6.21E-15 | view data |
SRA745734 | SRS3600974 | Intestinal epithelium | 15 | Paneth cells | 5.55E-17 | 6.92E-15 | view data |
SRA745734 | SRS3600974 | Intestinal epithelium | 16 | Paneth cells | 4.26E-19 | 7.49E-17 | view data |
SRA628138 | SRS2659231 | Intestinal organoid epithelial cells | 4 | Paneth cells | 4.02E-10 | 9.74E-8 | view data |
SRA508949 | SRS1876792 | Small intestine | 4 | Paneth cells | 1.65E-7 | 2.28E-5 | view data |
SRA508949 | SRS1876792 | Small intestine | 6 | Paneth cells | 4.22E-16 | 1.46E-13 | view data |
SRA628138 | SRS2659230 | Intestinal organoid epithelial cells | 7 | Paneth cells | 1.62E-15 | 6.80E-13 | view data |
SRA508949 | SRS1876793 | Small intestine | 3 | Paneth cells | 1.05E-5 | 1.16E-3 | view data |
SRA508949 | SRS1876793 | Small intestine | 5 | Paneth cells | 6.56E-12 | 1.13E-9 | view data |
SRA745734 | SRS3600975 | Intestinal epithelium | 0 | Paneth cells | 1.75E-19 | 2.96E-17 | view data |
SRA745734 | SRS3600975 | Intestinal epithelium | 2 | Paneth cells | 1.26E-25 | 7.47E-23 | view data |
SRA745734 | SRS3600975 | Intestinal epithelium | 5 | Paneth cells | 2.55E-14 | 2.53E-12 | view data |
SRA745734 | SRS3600975 | Intestinal epithelium | 6 | Paneth cells | 7.52E-13 | 7.04E-11 | view data |
SRA745734 | SRS3600975 | Intestinal epithelium | 7 | Paneth cells | 3.66E-23 | 1.19E-20 | view data |
SRA745734 | SRS3600975 | Intestinal epithelium | 10 | Paneth cells | 3.31E-19 | 5.35E-17 | view data |
SRA745734 | SRS3600975 | Intestinal epithelium | 14 | Paneth cells | 1.72E-11 | 1.36E-9 | view data |
SRA745734 | SRS3600975 | Intestinal epithelium | 15 | Paneth cells | 2.06E-12 | 1.74E-10 | view data |
SRA745734 | SRS3600975 | Intestinal epithelium | 16 | Paneth cells | 3.53E-18 | 5.02E-16 | view data |
SRA745734 | SRS3600975 | Intestinal epithelium | 17 | Paneth cells | 3.41E-16 | 3.79E-14 | view data |
SRA745734 | SRS3600975 | Intestinal epithelium | 18 | Paneth cells | 1.52E-18 | 2.25E-16 | view data |
SRA745734 | SRS3600975 | Intestinal epithelium | 19 | Paneth cells | 6.71E-16 | 7.24E-14 | view data |
SRA508949 | SRS1876788 | Small intestine | 5 | Paneth cells | 8.72E-21 | 5.19E-18 | view data |
SRA639854 | SRS2766801 | Intestinal crypt epithelium | 0 | Paneth cells | 1.30E-5 | 2.43E-3 | view data |
SRA639854 | SRS2766801 | Intestinal crypt epithelium | 4 | Paneth cells | 1.38E-9 | 8.80E-7 | view data |
SRA639854 | SRS2766801 | Intestinal crypt epithelium | 8 | Paneth cells | 5.12E-5 | 6.52E-3 | view data |
SRA639854 | SRS2766801 | Intestinal crypt epithelium | 9 | Paneth cells | 9.85E-8 | 3.14E-5 | view data |
SRA639854 | SRS2766801 | Intestinal crypt epithelium | 11 | Paneth cells | 6.74E-5 | 7.95E-3 | view data |
SRA639854 | SRS2766801 | Intestinal crypt epithelium | 15 | Paneth cells | 4.46E-6 | 9.46E-4 | view data |
SRA639854 | SRS2766801 | Intestinal crypt epithelium | 16 | Paneth cells | 1.04E-4 | 1.03E-2 | view data |
SRA508949 | SRS1876783 | Small intestine | 6 | Paneth cells | 5.00E-15 | 9.66E-13 | view data |
SRA877776 | SRS4655561 | Distal small intestine | 8 | Paneth cells | 3.79E-15 | 6.52E-13 | view data |
SRA877776 | SRS4655561 | Distal small intestine | 9 | Paneth cells | 3.56E-10 | 3.18E-8 | view data |
SRA877776 | SRS4655561 | Distal small intestine | 10 | Paneth cells | 3.69E-36 | 2.22E-33 | view data |
SRA877776 | SRS4655561 | Distal small intestine | 11 | Paneth cells | 1.50E-11 | 1.71E-9 | view data |
SRA628138 | SRS2659249 | Intestinal organoid epithelial cells | 9 | Paneth cells | 5.07E-11 | 1.20E-8 | view data |
SRA745734 | SRS3600977 | Intestinal epithelium | 0 | Paneth cells | 2.38E-27 | 6.86E-25 | view data |
SRA745734 | SRS3600977 | Intestinal epithelium | 1 | Paneth cells | 6.53E-24 | 1.48E-21 | view data |
SRA745734 | SRS3600977 | Intestinal epithelium | 2 | Paneth cells | 1.07E-14 | 1.22E-12 | view data |
SRA745734 | SRS3600977 | Intestinal epithelium | 3 | Paneth cells | 5.96E-40 | 3.15E-37 | view data |
SRA745734 | SRS3600977 | Intestinal epithelium | 9 | Paneth cells | 2.65E-28 | 8.40E-26 | view data |
SRA745734 | SRS3600977 | Intestinal epithelium | 10 | Paneth cells | 5.02E-19 | 7.95E-17 | view data |
SRA745734 | SRS3600977 | Intestinal epithelium | 12 | Paneth cells | 2.31E-34 | 1.05E-31 | view data |
SRA745734 | SRS3600977 | Intestinal epithelium | 13 | Paneth cells | 3.73E-33 | 1.48E-30 | view data |
SRA745734 | SRS3600977 | Intestinal epithelium | 14 | Paneth cells | 3.25E-19 | 5.41E-17 | view data |
SRA745734 | SRS3600977 | Intestinal epithelium | 15 | Paneth cells | 2.66E-27 | 7.02E-25 | view data |
SRA745734 | SRS3600977 | Intestinal epithelium | 16 | Paneth cells | 2.55E-19 | 4.48E-17 | view data |
SRA745734 | SRS3600977 | Intestinal epithelium | 17 | Paneth cells | 9.45E-22 | 2.00E-19 | view data |
SRA628138 | SRS2659221 | Intestinal organoid epithelial cells | 3 | Paneth cells | 2.58E-12 | 1.29E-9 | view data |
SRA628138 | SRS2659220 | Intestinal organoid epithelial cells | 8 | Paneth cells | 4.87E-12 | 1.11E-9 | view data |
SRA877776 | SRS4655562 | Distal small intestine | 9 | Paneth cells | 6.82E-42 | 5.54E-39 | view data |
SRA877776 | SRS4655562 | Distal small intestine | 10 | Paneth cells | 1.49E-10 | 1.91E-8 | view data |
SRA877776 | SRS4655562 | Distal small intestine | 11 | Paneth cells | 1.71E-8 | 1.73E-6 | view data |
SRA508949 | SRS1876794 | Small intestine | 7 | Paneth cells | 1.52E-15 | 4.22E-13 | view data |
SRA508949 | SRS1876795 | Small intestine | 7 | Paneth cells | 1.66E-16 | 3.57E-14 | view data |
SRA877776 | SRS4655563 | Distal small intestine | 5 | Paneth cells | 6.80E-10 | 6.94E-8 | view data |
SRA877776 | SRS4655563 | Distal small intestine | 7 | Paneth cells | 9.85E-35 | 3.45E-32 | view data |
SRA638923 | SRS2797113 | Small intestine | 4 | Paneth cells | 8.70E-37 | 8.77E-34 | view data |
SRA877776 | SRS4655560 | Distal small intestine | 6 | Paneth cells | 1.16E-8 | 7.63E-7 | view data |
SRA877776 | SRS4655560 | Distal small intestine | 7 | Paneth cells | 1.22E-35 | 1.07E-32 | view data |
SRA877776 | SRS4655560 | Distal small intestine | 8 | Paneth cells | 1.99E-20 | 4.97E-18 | view data |