Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for Purkinje neurons

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
2
Mm Hs CALB1 0.019 0 0.098 0.001 0.023 6 Purkinje neurons Ectoderm Brain CALB calbindin 1 flag
1
Mm Hs GAD2 0.073 0 0.463 0.024 0.086 2 Purkinje neurons Ectoderm Brain GAD65 glutamate decarboxylase 2 flag
1
Mm Hs GRID2 0.005 0 0.049 0.016 0.003 1 Purkinje neurons Ectoderm Brain GluD2,GluR-delta-2 glutamate ionotropic receptor delta type subunit 2 Yflag
1
Mm Hs GAD1 0.03 0 0.829 0.003 0.035 4 Purkinje neurons Ectoderm Brain GAD glutamate decarboxylase 1 Yflag
1
Mm Hs SLC1A6 0.003 0 0 0.003 0 3 Purkinje neurons Ectoderm Brain EAAT4 solute carrier family 1 member 6 flag
1
Mm Hs PCP4 0.083 0 0.732 0.019 0.095 3 Purkinje neurons Ectoderm Brain PEP-19 Purkinje cell protein 4 flag
1
Mm CAR8 0.013 0 0.049 0 0.016 3 Purkinje neurons Ectoderm Brain carbonic anhydrase 8 flag
1
Mm Hs SLC22A15 0.017 0 0 0 0 2 Purkinje neurons Ectoderm Brain FLIPT1 solute carrier family 22 member 15 flag
0
Mm Hs CAMK2A 0.026 0 0.341 0 0.031 3 Purkinje neurons Ectoderm Brain KIAA0968,CAMKA calcium/calmodulin dependent protein kinase II alpha flag
0
Mm Hs SLC24A2 0.026 0 0 0.008 0 1 Purkinje neurons Ectoderm Brain NCKX2 solute carrier family 24 member 2 flag
0
Mm Hs GRIA3 0.02 0 0.171 0.002 0.023 3 Purkinje neurons Ectoderm Brain GluA3,GLURC,MRX94,GLUR3 glutamate ionotropic receptor AMPA type subunit 3 Yflag
0
Mm Hs SLC32A1 0.026 0 0 0.002 0 4 Purkinje neurons Ectoderm Brain VGAT,bA122O1.1,VIAAT solute carrier family 32 member 1 flag
0
Mm Hs SLC12A5 0.048 0 0 0.004 0 4 Purkinje neurons Ectoderm Brain KIAA1176,KCC2 solute carrier family 12 member 5 Yflag
0
Mm Hs CNPY1 0.001 0 0.024 0 0.001 1 Purkinje neurons Ectoderm Brain canopy FGF signaling regulator 1 flag
0
Mm Hs DLG4 0.022 0 0.098 0 0.028 3 Purkinje neurons Ectoderm Brain PSD-95,PSD95,SAP90,SAP-90 discs large MAGUK scaffold protein 4 flag
0
Mm Hs SLC24A3 0.013 0 0 0 0 1 Purkinje neurons Ectoderm Brain solute carrier family 24 member 3 flag
0
Mm Hs CLSTN3 0.033 0 0.122 0.003 0.04 2 Purkinje neurons Ectoderm Brain CSTN3,KIAA0726,CDHR14 calsyntenin 3 flag
0
Mm Hs GABRA1 0.027 0 0.122 0 0.032 3 Purkinje neurons Ectoderm Brain EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit Yflag
0
Mm Hs KCNMA1 0.043 0 0.195 0.018 0.048 6 Purkinje neurons Ectoderm Brain KCa1.1,mSLO1,SLO potassium calcium-activated channel subfamily M alpha 1 Yflag
0
Mm Hs PENK 0.02 0 0.098 0.028 0.019 5 Purkinje neurons Ectoderm Brain proenkephalin flag
0
Mm Hs HIVEP2 0.055 0 0.439 0.003 0.067 3 Purkinje neurons Ectoderm Brain MBP-2,HIV-EP2,MIBP1,ZAS2,Schnurri-2,ZNF40B human immunodeficiency virus type I enhancer binding protein 2 flag
0
Mm Hs NRIP3 0.021 0 0.39 0.032 0.018 2 Purkinje neurons Ectoderm Brain C11orf14 nuclear receptor interacting protein 3 flag
0
Mm Hs TSHZ1 0.015 0 0 0.005 0 3 Purkinje neurons Ectoderm Brain NY-CO-33,SDCCAG33 teashirt zinc finger homeobox 1 Yflag
0
Mm Hs PCBP3 0.02 0 0.317 0.003 0.024 3 Purkinje neurons Ectoderm Brain FLJ44028,PCBP3-OT1,PCBP3OT poly(rC) binding protein 3 flag
0
Mm Hs GPSM1 0.004 0 0.268 0.001 0.005 1 Purkinje neurons Ectoderm Brain DKFZP727I051 G protein signaling modulator 1 flag
0
Mm Hs PPM1E 0.014 0 0.317 0.003 0.016 1 Purkinje neurons Ectoderm Brain POPX1,KIAA1072,PP2CH,CaMKP-N protein phosphatase, Mg2+/Mn2+ dependent 1E flag
0
Mm Hs DLGAP1 0.036 0 0.707 0.002 0.043 3 Purkinje neurons Ectoderm Brain GKAP,SAPAP1,DAP-1 DLG associated protein 1 flag
0
Mm Hs GNG4 0.013 0 0.244 0.018 0.011 2 Purkinje neurons Ectoderm Brain G protein subunit gamma 4 flag
0
Mm Hs SHISA8 0.004 0 0 0 0 2 Purkinje neurons Ectoderm Brain Orf26,C22orf17 shisa family member 8 flag
0
Mm Hs SYNPR 0.022 0 0 0.001 0 5 Purkinje neurons Ectoderm Brain MGC26651 synaptoporin flag
0
Mm Hs PRKCA 0.033 0 0.463 0.015 0.036 5 Purkinje neurons Ectoderm Brain PKCA protein kinase C alpha flag
0
Mm Hs PCP4L1 0.044 0 0.488 0 0.054 5 Purkinje neurons Ectoderm Brain IQM1 Purkinje cell protein 4 like 1 flag
0
Mm Hs PVALB 0.005 0 0.171 0.003 0.005 5 Purkinje neurons Ectoderm Brain D22S749 parvalbumin flag
0
Mm Hs ABAT 0.032 0 0.146 0.003 0.038 3 Purkinje neurons Ectoderm Brain GABAT 4-aminobutyrate aminotransferase Yflag
0
Mm Hs GRIN1 0.016 0 0.22 0.001 0.02 2 Purkinje neurons Ectoderm Brain GluN1,NMDAR1 glutamate ionotropic receptor NMDA type subunit 1 Yflag
0
Mm Hs HDAC6 0.006 0 0 0.003 0.007 1 Purkinje neurons Ectoderm Brain KIAA0901,JM21,HD6,FLJ16239,PPP1R90 histone deacetylase 6 Yflag
0
Mm Hs PRKG1 0.002 0 0 0.004 0.002 1 Purkinje neurons Ectoderm Brain PGK,PKG,PKG1,PRKGR1B,PRKG1B protein kinase cGMP-dependent 1 Yflag
0
Mm Hs ATP2B2 0.048 0 0.659 0.001 0.057 1 Purkinje neurons Ectoderm Brain PMCA2 ATPase plasma membrane Ca2+ transporting 2 Yflag
0
Mm Hs PDE5A 0.011 0 0 0.004 0.014 2 Purkinje neurons Ectoderm Brain phosphodiesterase 5A flag
0
Mm Hs ITPR3 0.007 0 0 0.013 0.006 2 Purkinje neurons Ectoderm Brain IP3R3 inositol 1,4,5-trisphosphate receptor type 3 Yflag
0
Mm Hs PDE1B 0.006 0 0.024 0 0.008 1 Purkinje neurons Ectoderm Brain PDES1B phosphodiesterase 1B flag
0
Mm Hs PDE1A 0.018 0 0 0.022 0.018 4 Purkinje neurons Ectoderm Brain phosphodiesterase 1A flag
0
Mm Hs OMP 0.001 0 0 0 0.002 3 Purkinje neurons Ectoderm Brain olfactory marker protein flag
0
Mm Hs PDE9A 0.003 0 0.024 0.004 0.003 1 Purkinje neurons Ectoderm Brain phosphodiesterase 9A flag
0
Mm Hs CBLN1 0.005 0 0 0.015 0.004 1 Purkinje neurons Ectoderm Brain cerebellin 1 precursor flag
0
Mm Hs MRPS35 0.048 0 0 0.07 0.038 1 Purkinje neurons Ectoderm Brain MRPS28,MDS023 mitochondrial ribosomal protein S35 flag
0
Mm Hs HCN1 0.005 0 0.146 0 0.006 1 Purkinje neurons Ectoderm Brain BCNG-1,HAC-2,BCNG1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 Yflag
0
Mm Hs SHANK2 0.002 0 0 0.001 0 1 Purkinje neurons Ectoderm Brain CTTNBP1,ProSAP1,SHANK,SPANK-3,CORTBP1 SH3 and multiple ankyrin repeat domains 2 Yflag
0
Mm Hs CACNA2D2 0.027 0 0.049 0.001 0.034 5 Purkinje neurons Ectoderm Brain KIAA0558 calcium voltage-gated channel auxiliary subunit alpha2delta 2 flag
0
Mm Hs NKAIN4 0.036 0 0 0.009 0.042 3 Purkinje neurons Ectoderm Brain bA261N11.2,FAM77A,C20orf58 sodium/potassium transporting ATPase interacting 4 flag
0
Mm Hs CNTNAP2 0.037 0 0.122 0.024 0.04 4 Purkinje neurons Ectoderm Brain Caspr2,KIAA0868 contactin associated protein like 2 Yflag
0
Mm Hs TH 0.002 0 0 0.002 0 8 Purkinje neurons Ectoderm Brain DYT5b tyrosine hydroxylase Yflag
0
Mm Hs CERK 0.011 0 0.098 0.009 0.011 2 Purkinje neurons Ectoderm Brain hCERK,FLJ23239,dA59H18.3,DKFZp434E0211,FLJ21430,KIAA1646,LK4,dA59H18.2 ceramide kinase flag
0
Mm Hs CD3G 0.048 0 0 0.085 0.041 5 Purkinje neurons Ectoderm Brain CD3g molecule Yflag
0
Mm Hs KCNA2 0.019 0 0.146 0 0.024 2 Purkinje neurons Ectoderm Brain Kv1.2 potassium voltage-gated channel subfamily A member 2 Yflag
0
Mm Hs CACNG2 0.014 0 0.244 0 0.017 3 Purkinje neurons Ectoderm Brain stargazin,MGC138502,MGC138504 calcium voltage-gated channel auxiliary subunit gamma 2 Yflag
0
Mm Hs SYT2 0.002 0 0 0 0 2 Purkinje neurons Ectoderm Brain synaptotagmin 2 Yflag
0
Mm Hs CPLX1 0.026 0 0.244 0 0.032 3 Purkinje neurons Ectoderm Brain CPX-I complexin 1 flag
0
Mm Hs PKP4 0.03 0 0.146 0.007 0.036 1 Purkinje neurons Ectoderm Brain p0071 plakophilin 4 flag
0
Mm Hs ADGRB1 0.019 0 0.293 0 0.023 1 Purkinje neurons Ectoderm Brain BAI1 adhesion G protein-coupled receptor B1 flag

Datasets with computationally identified Purkinje neurons

SRA SRS tissue cluster cell type p-value FDR View
SRA667466 SRS3060047 Dorsal midbrain 5 Purkinje neurons 9.80E-6 1.57E-3 view data
SRA667466 SRS3060025 Olfactory bulb 1 Purkinje neurons 6.10E-6 1.69E-3 view data
SRA667466 SRS3060037 Dorsal midbrain 6 Purkinje neurons 1.58E-6 2.78E-4 view data
SRA667466 SRS3059960 Cerebellum 2 Purkinje neurons 9.62E-19 9.99E-16 view data
SRA667466 SRS3059946 Hippocampus (ca1) 13 Purkinje neurons 1.09E-5 7.95E-4 view data
SRA667466 SRS3060003 Olfactory bulb? 0 Purkinje neurons 1.04E-15 5.31E-13 view data
SRA800102 SRS3990030 Olfactory bulb 3 Purkinje neurons 2.19E-7 9.58E-5 view data
SRA800102 SRS3990030 Olfactory bulb 18 Purkinje neurons 3.81E-5 1.02E-2 view data
SRA667466 SRS3059969 Ventral midbrain 10 Purkinje neurons 2.05E-10 6.69E-8 view data
SRA850958 SRS4386114 Bed nucleus of the stria terminalis 5 Purkinje neurons 1.29E-4 1.09E-2 view data
SRA800102 SRS3990021 Olfactory bulb 7 Purkinje neurons 1.66E-4 2.85E-2 view data
SRA800102 SRS3990021 Olfactory bulb 8 Purkinje neurons 1.68E-8 7.07E-6 view data
SRA800102 SRS3990021 Olfactory bulb 20 Purkinje neurons 1.64E-5 3.78E-3 view data
SRA850958 SRS4386120 Bed nucleus of the stria terminalis 11 Purkinje neurons 2.15E-6 2.81E-4 view data
SRA203368 SRS866907 Retina 18 Purkinje neurons 4.68E-6 4.24E-4 view data
SRA800102 SRS3990019 Olfactory bulb 6 Purkinje neurons 4.21E-12 1.94E-9 view data
SRA800102 SRS3990019 Olfactory bulb 8 Purkinje neurons 5.99E-6 1.20E-3 view data
SRA800102 SRS3990019 Olfactory bulb 9 Purkinje neurons 5.41E-13 2.76E-10 view data
SRA667466 SRS3059961 Ventral striatum 26 Purkinje neurons 1.41E-5 2.51E-3 view data
SRA667466 SRS3059959 Cerebellum 2 Purkinje neurons 1.65E-20 2.87E-17 view data
SRA667466 SRS3060007 Amygdala 12 Purkinje neurons 2.10E-17 1.50E-14 view data
SRA850958 SRS4386127 Bed nucleus of the stria terminalis 6 Purkinje neurons 3.46E-8 5.26E-6 view data
SRA667466 SRS3060002 Olfactory bulb? 0 Purkinje neurons 1.45E-15 6.83E-13 view data
SRA667466 SRS3060002 Olfactory bulb? 10 Purkinje neurons 2.67E-5 4.73E-3 view data
SRA850958 SRS4386088 Stria terminalis (brain) 10 Purkinje neurons 4.09E-5 3.44E-3 view data
SRA667466 SRS3060063 Olfactory bulb 0 Purkinje neurons 3.85E-16 1.80E-13 view data
SRA667466 SRS3060063 Olfactory bulb 4 Purkinje neurons 1.38E-6 3.21E-4 view data
SRA667466 SRS3060063 Olfactory bulb 7 Purkinje neurons 7.60E-10 2.58E-7 view data
SRA850958 SRS4386122 Bed nucleus of the stria terminalis 5 Purkinje neurons 3.98E-6 4.32E-4 view data
SRA850958 SRS4386123 Bed nucleus of the stria terminalis 9 Purkinje neurons 3.30E-6 4.44E-4 view data
SRA800102 SRS3990018 Olfactory bulb 0 Purkinje neurons 8.54E-7 2.48E-4 view data
SRA800102 SRS3990018 Olfactory bulb 8 Purkinje neurons 1.89E-5 4.81E-3 view data
SRA667466 SRS3059983 Cerebellum 8 Purkinje neurons 7.45E-16 1.17E-12 view data
SRA667466 SRS3060029 Cortex 1 8 Purkinje neurons 2.99E-7 3.97E-5 view data
SRA667466 SRS3060067 Olfactory bulb 0 Purkinje neurons 1.87E-13 1.00E-10 view data
SRA800102 SRS3990017 Olfactory bulb 5 Purkinje neurons 9.11E-5 1.56E-2 view data
SRA800102 SRS3990017 Olfactory bulb 7 Purkinje neurons 6.73E-13 4.11E-10 view data
SRA667466 SRS3059982 Cerebellum 2 Purkinje neurons 2.57E-7 6.66E-5 view data
SRA667466 SRS3059982 Cerebellum 11 Purkinje neurons 4.74E-21 9.84E-18 view data
SRA800102 SRS3990020 Olfactory bulb 5 Purkinje neurons 2.57E-10 1.27E-7 view data
SRA800102 SRS3990020 Olfactory bulb 8 Purkinje neurons 1.79E-4 3.06E-2 view data