Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Radial glial cells can be found in the cortex of the developing central nervous system and serve as primary progenitor cells capable of generating neurons, astrocytes, and oligodendrocytes.

Gene expression markers for Radial glia cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
0
Mm Hs PAX6 0.049 0 0.75 0.014 0.059 8 Radial glia cells Ectoderm Brain D11S812E,AN2 paired box 6 Yflag
0
Mm Hs SLC1A3 0.074 0 0 0.011 0 6 Radial glia cells Ectoderm Brain EAAT1,GLAST,EA6 solute carrier family 1 member 3 Yflag
0
Mm Hs PDGFD 0.003 0 0 0.004 0.003 2 Radial glia cells Ectoderm Brain SCDGF-B,MSTP036,IEGF platelet derived growth factor D flag
0
Mm Hs GLI3 0.003 0 0 0.006 0.002 2 Radial glia cells Ectoderm Brain PAP-A,PAPA1,PAPB,ACLS,PPDIV,GCPS,PHS GLI family zinc finger 3 Yflag
0
Mm Hs NOTCH3 0.02 0 0 0.014 0.022 8 Radial glia cells Ectoderm Brain CASIL,CADASIL notch 3 Yflag
0
Mm Hs VCAM1 0.041 0 0 0.007 0 6 Radial glia cells Ectoderm Brain CD106 vascular cell adhesion molecule 1 flag
0
Mm Hs HES5 0.036 0 1 0.001 0.042 3 Radial glia cells Ectoderm Brain bHLHb38 hes family bHLH transcription factor 5 flag
0
Mm Hs OLIG2 0.039 0 0 0.002 0.049 3 Radial glia cells Ectoderm Brain RACK17,OLIGO2,bHLHe19,PRKCBP2,BHLHB1 oligodendrocyte transcription factor 2 flag
0
Mm Hs GFAP 0.013 0 1 0.006 0.015 11 Radial glia cells Ectoderm Brain FLJ45472 glial fibrillary acidic protein Yflag
0
Mm Hs EMX2 0.027 0 0.25 0.011 0.032 2 Radial glia cells Ectoderm Brain empty spiracles homeobox 2 Yflag
0
Mm Hs CDH4 0.017 0 1 0 0.02 3 Radial glia cells Ectoderm Brain cadherin 4 flag
0
Mm Hs SPRY1 0.019 0 0 0.03 0 2 Radial glia cells Ectoderm Brain hSPRY1 sprouty RTK signaling antagonist 1 flag
0
Mm Hs AXIN2 0.006 0 1 0.001 0.008 2 Radial glia cells Ectoderm Brain MGC126582,DKFZp781B0869 axin 2 Yflag
0
Mm Hs RIIAD1 0.019 0 0 0.012 0 3 Radial glia cells Ectoderm Brain FLJ36032,NCRNA00166,C1orf230 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 flag

Datasets with computationally identified Radial glia cells

SRA SRS tissue cluster cell type p-value FDR View
SRA526435 SRS1915176 Cortex, hippocampus and subventricular zone 24 Radial glia cells 6.97E-5 4.78E-2 view data
SRA526435 SRS1915147 Cortex, hippocampus and subventricular zone 23 Radial glia cells 4.31E-5 2.40E-2 view data
SRA526435 SRS1915139 Cortex, hippocampus and subventricular zone 22 Radial glia cells 7.63E-5 4.24E-2 view data
SRA526435 SRS1915134 Cortex, hippocampus and subventricular zone 23 Radial glia cells 6.09E-5 3.87E-2 view data