Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Present in the red pulp of the spleen. They are necessary for maintaining blood homeostasis by performing phagocytosis upon injured and senescent erythrocytes and blood-borne particulates.

Gene expression markers for Red pulp macrophages

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
0
Mm Hs HMOX1 0.046 0 1 0.036 0.047 3 Red pulp macrophages Mesoderm Immune system bK286B10,HO-1 heme oxygenase 1 Yflag
0
Mm Hs TREML4 0.003 0 0 0 0 3 Red pulp macrophages Mesoderm Immune system TLT4 triggering receptor expressed on myeloid cells like 4 flag
0
Mm Hs CD86 0.026 0 0.31 0.012 0.029 7 Red pulp macrophages Mesoderm Immune system B7.2,B7-2,CD28LG2 CD86 molecule flag
0
Mm Hs NR1H3 0.008 0 0.552 0.01 0.007 3 Red pulp macrophages Mesoderm Immune system LXR-a,RLD-1,LXRa nuclear receptor subfamily 1 group H member 3 flag
0
Mm Hs SLC11A1 0.017 0 0 0.007 0 5 Red pulp macrophages Mesoderm Immune system NRAMP,NRAMP1 solute carrier family 11 member 1 Yflag
0
Mm Hs ADGRE1 0.033 0 0.862 0.001 0.04 6 Red pulp macrophages Mesoderm Immune system TM7LN3,EMR1 adhesion G protein-coupled receptor E1 flag
0
Mm Hs MERTK 0.016 0 0.552 0.001 0.019 3 Red pulp macrophages Mesoderm Immune system mer,RP38,c-Eyk,Tyro12 MER proto-oncogene, tyrosine kinase Yflag
0
Mm Hs CCR3 0.001 0 0.621 0 0 6 Red pulp macrophages Mesoderm Immune system CC-CKR-3,CKR3,CD193,CMKBR3 C-C motif chemokine receptor 3 flag
0
Mm Hs SPIC 0.002 0 0 0 0 2 Red pulp macrophages Mesoderm Immune system MGC40611,SPI-C Spi-C transcription factor flag
0
Mm Hs SLC40A1 0.033 0 0 0.035 0 3 Red pulp macrophages Mesoderm Immune system MTP1,IREG1,FPN1,HFE4,SLC11A3 solute carrier family 40 member 1 Yflag
0
Mm Hs VCAM1 0.041 0 0 0.007 0 6 Red pulp macrophages Mesoderm Immune system CD106 vascular cell adhesion molecule 1 flag
0
Mm Hs SIGLEC1 0 0 0 0 0 1 Red pulp macrophages Mesoderm Immune system SIGLEC-1,CD169,FLJ00051,FLJ00055,FLJ00073,FLJ32150,dJ1009E24.1,sialoadhesin sialic acid binding Ig like lectin 1 flag

Datasets with computationally identified Red pulp macrophages

SRA SRS tissue cluster cell type p-value FDR View
SRA834897 SRS4252175 Macrophage from E14.5 10 Red pulp macrophages 1.43E-9 4.95E-7 view data
SRA834897 SRS4252174 Macrophage from E14.5 10 Red pulp macrophages 1.21E-7 2.77E-5 view data
SRA739096 SRS3545820 Spleen 0 Red pulp macrophages 1.68E-10 5.77E-8 view data
SRA739096 SRS3545820 Spleen 1 Red pulp macrophages 2.36E-15 2.84E-12 view data
SRA739096 SRS3545820 Spleen 2 Red pulp macrophages 8.16E-9 1.97E-6 view data
SRA739096 SRS3545820 Spleen 4 Red pulp macrophages 3.89E-17 9.38E-14 view data
SRA739096 SRS3545820 Spleen 5 Red pulp macrophages 1.95E-8 4.27E-6 view data
SRA739096 SRS3545820 Spleen 6 Red pulp macrophages 3.62E-8 6.70E-6 view data
SRA739096 SRS3545820 Spleen 7 Red pulp macrophages 2.43E-14 1.95E-11 view data
SRA739096 SRS3545820 Spleen 11 Red pulp macrophages 3.80E-6 5.72E-4 view data
SRA815866 SRS4088858 Bone marrow 7 Red pulp macrophages 2.61E-10 5.63E-8 view data
SRA815866 SRS4088857 Bone marrow 4 Red pulp macrophages 1.24E-4 2.25E-2 view data
SRA739096 SRS3545828 Spleen 0 Red pulp macrophages 9.55E-10 4.32E-7 view data
SRA739096 SRS3545828 Spleen 2 Red pulp macrophages 7.29E-11 5.50E-8 view data
SRA739096 SRS3545828 Spleen 3 Red pulp macrophages 1.07E-10 6.04E-8 view data
SRA739096 SRS3545828 Spleen 4 Red pulp macrophages 6.25E-5 6.73E-3 view data
SRA739096 SRS3545828 Spleen 6 Red pulp macrophages 6.33E-9 2.05E-6 view data
SRA739096 SRS3545828 Spleen 7 Red pulp macrophages 1.37E-5 2.06E-3 view data
SRA739096 SRS3545828 Spleen 8 Red pulp macrophages 3.26E-6 5.67E-4 view data
SRA739096 SRS3545828 Spleen 9 Red pulp macrophages 1.45E-6 3.27E-4 view data
SRA739096 SRS3545828 Spleen 10 Red pulp macrophages 9.04E-12 1.02E-8 view data
SRA739096 SRS3545828 Spleen 11 Red pulp macrophages 6.93E-8 1.96E-5 view data
SRA739096 SRS3545824 Liver 0 Red pulp macrophages 2.16E-8 1.86E-6 view data
SRA739096 SRS3545824 Liver 1 Red pulp macrophages 2.03E-12 4.88E-10 view data
SRA739096 SRS3545824 Liver 3 Red pulp macrophages 4.06E-12 8.15E-10 view data
SRA739096 SRS3545824 Liver 4 Red pulp macrophages 1.29E-10 1.41E-8 view data
SRA739096 SRS3545824 Liver 6 Red pulp macrophages 2.46E-6 1.64E-4 view data
SRA638923 SRS2797066 Fetal liver 4 Red pulp macrophages 8.06E-6 3.20E-3 view data
SRA834897 SRS4252172 Macrophage from E14.5 7 Red pulp macrophages 9.76E-9 2.13E-6 view data