Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: A type of neuron located near the inner surface (the ganglion cell layer) of the retina of the eye. It receives visual information from photoreceptors via two intermediate neuron types: bipolar cells and retina amacrine cells.

Gene expression markers for Retinal ganglion cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
3
Mm Hs RBPMS 0.076 0 0 0.086 0 1 Retinal ganglion cells Ectoderm Brain HERMES RNA binding protein, mRNA processing factor flag
1
Mm Hs POU4F2 0.002 0 0.543 0 0 1 Retinal ganglion cells Ectoderm Brain Brn-3b,BRN3B POU class 4 homeobox 2 flag
1
Mm Hs POU4F1 0.006 0 1 0 0.005 1 Retinal ganglion cells Ectoderm Brain RDC-1,BRN3A POU class 4 homeobox 1 flag
1
Mm Hs ISL1 0.028 0 0.63 0.013 0.03 13 Retinal ganglion cells Ectoderm Brain Isl-1,ISLET1 ISL LIM homeobox 1 flag
0
Mm Hs GRIP1 0.006 0 0.826 0 0.005 1 Retinal ganglion cells Ectoderm Brain glutamate receptor interacting protein 1 Yflag
0
Mm Hs CPNE4 0.006 1 0.674 0.001 0.006 1 Retinal ganglion cells Ectoderm Brain COPN4,CPN4 copine 4 flag
0
Mm Hs KCTD8 0.005 0 0.87 0 0.004 1 Retinal ganglion cells Ectoderm Brain potassium channel tetramerization domain containing 8 flag
0
Mm Hs MAB21L2 0.006 0 0.826 0.004 0.004 1 Retinal ganglion cells Ectoderm Brain mab-21 like 2 Yflag
0
Mm Hs DTX1 0.007 0 0.87 0 0.007 1 Retinal ganglion cells Ectoderm Brain hDx-1,RNF140 deltex E3 ubiquitin ligase 1 flag
0
Mm Hs BARHL2 0.004 0 0.522 0 0.004 3 Retinal ganglion cells Ectoderm Brain BarH like homeobox 2 flag
0
Mm Hs NARF 0.031 1 0.891 0.115 0.007 1 Retinal ganglion cells Ectoderm Brain FLJ10067,DKFZp434G0420,IOP2 nuclear prelamin A recognition factor flag
0
Mm Hs TOX2 0.008 0 0 0.006 0 1 Retinal ganglion cells Ectoderm Brain dJ1108D11.2,GCX-1,C20orf100 TOX high mobility group box family member 2 flag
0
Mm ZFP580 0.01 NA NA NA NA 1 Retinal ganglion cells Ectoderm Brain zinc finger protein 580 flag
0
Mm Hs CHRNA6 0.003 0 0.804 0 0.002 2 Retinal ganglion cells Ectoderm Brain cholinergic receptor nicotinic alpha 6 subunit flag
0
Mm Hs POU6F2 0.002 0 0.587 0 0.001 2 Retinal ganglion cells Ectoderm Brain RPF-1 POU class 6 homeobox 2 Yflag
0
Mm Hs ABLIM3 0.005 0 0.87 0.002 0.004 1 Retinal ganglion cells Ectoderm Brain KIAA0843 actin binding LIM protein family member 3 flag
0
Mm Hs SIX6 0.004 0 0 0 0 3 Retinal ganglion cells Ectoderm Brain Six9,OPTX2 SIX homeobox 6 Yflag
0
Mm Hs GPHN 0.008 0 0.891 0.001 0.007 1 Retinal ganglion cells Ectoderm Brain KIAA1385 gephyrin Yflag
0
Mm Hs TTLL1 0.01 0 0 0 0 1 Retinal ganglion cells Ectoderm Brain C22orf7 tubulin tyrosine ligase like 1 flag
0
Mm Hs CPNE5 0.008 0 0.717 0.001 0.008 2 Retinal ganglion cells Ectoderm Brain CPN5,COPN5,KIAA1599 copine 5 flag
0
Mm Hs KLHDC8A 0.005 0 0.891 0.001 0.004 1 Retinal ganglion cells Ectoderm Brain FLJ10748 kelch domain containing 8A flag
0
Mm Hs IRX6 0.001 0 0.413 0 0 1 Retinal ganglion cells Ectoderm Brain IRX-3,IRX7 iroquois homeobox 6 flag
0
Mm Hs SYT16 0.007 0 0 0.003 0 1 Retinal ganglion cells Ectoderm Brain yt14r,CHR14SYT,Strep14 synaptotagmin 16 flag
0
Mm Hs CACNB3 0.032 1 0.913 0.002 0.037 3 Retinal ganglion cells Ectoderm Brain CACNLB3 calcium voltage-gated channel auxiliary subunit beta 3 flag
0
Mm Hs CSDC2 0.013 0 0.913 0.002 0.013 1 Retinal ganglion cells Ectoderm Brain PIPPin cold shock domain containing C2 flag
0
Mm Hs AKAP7 0.02 0 0.913 0.006 0.021 1 Retinal ganglion cells Ectoderm Brain AKAP18,AKAP15 A-kinase anchoring protein 7 flag
0
Mm Hs HPCA 0.015 0 0.935 0.003 0.015 2 Retinal ganglion cells Ectoderm Brain hippocalcin Yflag
0
Mm Hs SLC17A6 0.016 1 0 0 0 6 Retinal ganglion cells Ectoderm Brain DNPI,VGLUT2 solute carrier family 17 member 6 flag
0
Mm Hs FGF12 0.014 0 0.891 0.004 0.015 3 Retinal ganglion cells Ectoderm Brain FHF1,FGF12B fibroblast growth factor 12 flag
0
Mm Hs DNER 0.046 1 0.978 0.018 0.052 2 Retinal ganglion cells Ectoderm Brain UNQ26,bet delta/notch like EGF repeat containing flag
0
Mm Hs TMEM163 0.027 0 0 0.001 0 4 Retinal ganglion cells Ectoderm Brain DKFZP566N034,SV31 transmembrane protein 163 flag
0
Mm Hs RBPMS2 0.017 0 0 0.007 0 2 Retinal ganglion cells Ectoderm Brain RNA binding protein, mRNA processing factor 2 flag
0
Mm Hs CDK14 0.024 0 1 0.004 0.026 1 Retinal ganglion cells Ectoderm Brain PFTAIRE1,PFTK1 cyclin dependent kinase 14 flag
0
Mm Hs FXYD7 0.024 1 0.978 0.001 0.027 2 Retinal ganglion cells Ectoderm Brain FXYD domain containing ion transport regulator 7 flag
0
Mm Hs NEFM 0.028 1 1 0.02 0.025 5 Retinal ganglion cells Ectoderm Brain NFM,NF-M,NEF3 neurofilament medium flag
0
Mm Hs SNCG 0.03 1 0 0.038 0 4 Retinal ganglion cells Ectoderm Brain BCSG1,SR,persyn synuclein gamma flag
0
Mm Hs DPP10 0.01 0 0.63 0.001 0.011 1 Retinal ganglion cells Ectoderm Brain DPRP3,DPL2,DPPY dipeptidyl peptidase like 10 flag
0
Mm Hs CCDC184 0.009 1 0.826 0.007 0.008 2 Retinal ganglion cells Ectoderm Brain LOC387856,C12orf68 coiled-coil domain containing 184 flag
0
Mm Hs GALNTL6 0.01 0 0.739 0 0.011 1 Retinal ganglion cells Ectoderm Brain GALNT17,GalNAc-T6L polypeptide N-acetylgalactosaminyltransferase like 6 flag
0
Mm Hs SCAPER 0.016 0 0 0.033 0 1 Retinal ganglion cells Ectoderm Brain Zfp291,ZNF291 S-phase cyclin A associated protein in the ER flag
0
Mm Hs THEM4 0.01 0 0 0.013 0 1 Retinal ganglion cells Ectoderm Brain CTMP thioesterase superfamily member 4 flag
0
Mm Hs CHRNB3 0.002 0 0.739 0 0.001 1 Retinal ganglion cells Ectoderm Brain cholinergic receptor nicotinic beta 3 subunit flag
0
Mm Hs GALNT14 0.003 0 0.565 0.001 0.003 1 Retinal ganglion cells Ectoderm Brain GalNac-T10,FLJ12691,GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 Yflag
0
Mm Hs SMIM18 0.004 1 0 0 0 1 Retinal ganglion cells Ectoderm Brain small integral membrane protein 18 flag
0
Mm Hs SHD 0.005 0 0 0.006 0 1 Retinal ganglion cells Ectoderm Brain Src homology 2 domain containing transforming protein D flag
0
Mm Hs NKAIN3 0.009 1 0.587 0.01 0.007 1 Retinal ganglion cells Ectoderm Brain FLJ39630,FAM77D sodium/potassium transporting ATPase interacting 3 flag
0
Mm Hs YDJC 0.02 0 0 0.051 0 1 Retinal ganglion cells Ectoderm Brain YdjC chitooligosaccharide deacetylase homolog flag
0
Mm Hs IRX5 0.009 0 0.413 0.001 0.01 1 Retinal ganglion cells Ectoderm Brain IRX-2a iroquois homeobox 5 Yflag
0
Mm Hs SNX16 0.007 0 0 0.011 0 1 Retinal ganglion cells Ectoderm Brain sorting nexin 16 flag
0
Mm Hs ATF6B 0.022 0 0.826 0.009 0.022 1 Retinal ganglion cells Ectoderm Brain CREBL1 activating transcription factor 6 beta flag
0
Hs RNU1-1 0 0 0 0 0 1 Retinal ganglion cells Ectoderm Brain Rnu1a1,U1,HU1-1,U1A1,HSD1,RNU1,RNU1G4,RNU1A3,RNU1A RNA, U1 small nuclear 1 flag
0
Mm Hs NHLH2 0.021 1 0.065 0.001 0.026 2 Retinal ganglion cells Ectoderm Brain bHLHa34,HEN2 nescient helix-loop-helix 2 flag
0
Mm Hs NGF 0.003 0 0 0.001 0.003 3 Retinal ganglion cells Ectoderm Brain NGFB nerve growth factor Yflag
0
Mm Hs BTBD10 0.018 0 0.848 0.032 0.013 1 Retinal ganglion cells Ectoderm Brain GMRP1,GMRP-1,MGC13007 BTB domain containing 10 flag
0
Mm Hs EVC2 0.001 0 0.348 0 0.001 1 Retinal ganglion cells Ectoderm Brain LBN EvC ciliary complex subunit 2 Yflag
0
Mm Hs BBC3 0.009 0 0.826 0.015 0.006 1 Retinal ganglion cells Ectoderm Brain JFY1,PUMA BCL2 binding component 3 flag
0
Mm Hs RTN2 0.011 0 0 0.002 0 1 Retinal ganglion cells Ectoderm Brain NSPL1,SPG12 reticulon 2 Yflag
0
Mm Hs NELL1 0.005 0 0.522 0.001 0.005 1 Retinal ganglion cells Ectoderm Brain IDH3GL,FLJ45906 neural EGFL like 1 flag
0
Mm Hs FBXO44 0.01 0 0.826 0.003 0.009 1 Retinal ganglion cells Ectoderm Brain FBG3,MGC14140,Fbxo6a,Fbx44 F-box protein 44 flag
0
Mm Hs STOML1 0.008 0 0 0.001 0 1 Retinal ganglion cells Ectoderm Brain hUNC-24,SLP-1,STORP,FLJ36370 stomatin like 1 flag
0
Mm Hs SLC29A4 0.006 0 0 0.009 0 2 Retinal ganglion cells Ectoderm Brain FLJ34923,ENT4 solute carrier family 29 member 4 flag
0
Mm Hs EFNA3 0.009 0 0.848 0.002 0.008 2 Retinal ganglion cells Ectoderm Brain LERK3,Ehk1-L,EPLG3 ephrin A3 flag
0
Mm Hs PRKCA 0.033 0 0.457 0.015 0.036 5 Retinal ganglion cells Ectoderm Brain PKCA protein kinase C alpha flag
0
Mm Hs GGT7 0.007 0 0.848 0 0.006 2 Retinal ganglion cells Ectoderm Brain D20S101,dJ18C9.2,GGTL5,GGTL3 gamma-glutamyltransferase 7 flag
0
Mm Hs DCTN1 0.021 0 0.848 0.008 0.021 1 Retinal ganglion cells Ectoderm Brain dynactin subunit 1 Yflag
0
Mm Hs IGLON5 0.004 0 0.826 0.002 0.002 1 Retinal ganglion cells Ectoderm Brain LOC402665 IgLON family member 5 flag
0
Mm Hs MTUS2 0.006 0 0.848 0 0.005 1 Retinal ganglion cells Ectoderm Brain TIP150,CAZIP,KIAA0774 microtubule associated scaffold protein 2 flag
0
Mm Hs GALNT9 0.004 0 0.804 0 0.003 1 Retinal ganglion cells Ectoderm Brain GALNAC-T9 polypeptide N-acetylgalactosaminyltransferase 9 flag
0
Mm Hs SRRM3 0.007 1 0 0.001 0 1 Retinal ganglion cells Ectoderm Brain FLJ37078 serine/arginine repetitive matrix 3 flag
0
Mm Hs LHFPL5 0.004 0 0.826 0 0.002 1 Retinal ganglion cells Ectoderm Brain MGC33835,dJ510O8.8,Tmhs,DFNB67 LHFPL tetraspan subfamily member 5 Yflag

Datasets with computationally identified Retinal ganglion cells

SRA SRS tissue cluster cell type p-value FDR View
SRA716152 SRS3384791 Retinal ganglion cells 0 Retinal ganglion cells 0.00E+0 0.00E+0 view data
SRA716152 SRS3384791 Retinal ganglion cells 1 Retinal ganglion cells 2.46E-42 1.23E-39 view data
SRA716152 SRS3384791 Retinal ganglion cells 2 Retinal ganglion cells 2.01E-39 6.48E-37 view data
SRA716152 SRS3384791 Retinal ganglion cells 3 Retinal ganglion cells 3.12E-43 2.14E-40 view data
SRA716152 SRS3384791 Retinal ganglion cells 4 Retinal ganglion cells 7.66E-32 1.02E-29 view data
SRA716152 SRS3384791 Retinal ganglion cells 5 Retinal ganglion cells 0.00E+0 0.00E+0 view data
SRA716152 SRS3384791 Retinal ganglion cells 6 Retinal ganglion cells 6.21E-43 3.41E-40 view data
SRA716152 SRS3384791 Retinal ganglion cells 7 Retinal ganglion cells 8.25E-35 1.33E-32 view data
SRA716152 SRS3384791 Retinal ganglion cells 8 Retinal ganglion cells 0.00E+0 1.19E-43 view data
SRA716152 SRS3384791 Retinal ganglion cells 9 Retinal ganglion cells 0.00E+0 1.40E-45 view data
SRA716152 SRS3384791 Retinal ganglion cells 10 Retinal ganglion cells 1.19E-43 9.33E-41 view data
SRA716152 SRS3384791 Retinal ganglion cells 11 Retinal ganglion cells 5.90E-37 1.35E-34 view data
SRA716152 SRS3384791 Retinal ganglion cells 12 Retinal ganglion cells 5.44E-43 3.31E-40 view data
SRA716152 SRS3384791 Retinal ganglion cells 13 Retinal ganglion cells 1.27E-38 3.47E-36 view data
SRA716152 SRS3384791 Retinal ganglion cells 14 Retinal ganglion cells 3.00E-36 5.88E-34 view data
SRA716152 SRS3384791 Retinal ganglion cells 16 Retinal ganglion cells 4.76E-44 4.30E-41 view data
SRA716152 SRS3384791 Retinal ganglion cells 17 Retinal ganglion cells 4.57E-42 2.09E-39 view data
SRA716152 SRS3384791 Retinal ganglion cells 19 Retinal ganglion cells 1.40E-36 2.84E-34 view data
SRA716152 SRS3384791 Retinal ganglion cells 20 Retinal ganglion cells 5.03E-8 2.11E-6 view data
SRA716152 SRS3384791 Retinal ganglion cells 21 Retinal ganglion cells 1.92E-40 6.59E-38 view data
SRA716152 SRS3384791 Retinal ganglion cells 22 Retinal ganglion cells 1.76E-35 3.23E-33 view data
SRA716152 SRS3384791 Retinal ganglion cells 24 Retinal ganglion cells 1.00E-5 3.09E-4 view data
SRA716152 SRS3384791 Retinal ganglion cells 25 Retinal ganglion cells 4.11E-39 1.25E-36 view data
SRA716152 SRS3384791 Retinal ganglion cells 26 Retinal ganglion cells 8.40E-29 1.00E-26 view data
SRA716152 SRS3384791 Retinal ganglion cells 27 Retinal ganglion cells 0.00E+0 9.81E-45 view data
SRA716152 SRS3384791 Retinal ganglion cells 29 Retinal ganglion cells 2.89E-41 1.15E-38 view data
SRA716152 SRS3384791 Retinal ganglion cells 30 Retinal ganglion cells 1.48E-34 2.31E-32 view data
SRA203368 SRS866906 Retina 11 Retinal ganglion cells 9.29E-9 1.50E-6 view data
SRA646572 SRS2833946 Human embryo forebrain 23 Retinal ganglion cells 6.30E-5 4.64E-2 view data
SRA716152 SRS3384790 Retinal ganglion cells 0 Retinal ganglion cells 7.35E-42 5.73E-39 view data
SRA716152 SRS3384790 Retinal ganglion cells 1 Retinal ganglion cells 3.92E-44 5.01E-41 view data
SRA716152 SRS3384790 Retinal ganglion cells 2 Retinal ganglion cells 0.00E+0 0.00E+0 view data
SRA716152 SRS3384790 Retinal ganglion cells 3 Retinal ganglion cells 7.23E-42 5.73E-39 view data
SRA716152 SRS3384790 Retinal ganglion cells 5 Retinal ganglion cells 0.00E+0 3.55E-43 view data
SRA716152 SRS3384790 Retinal ganglion cells 6 Retinal ganglion cells 5.38E-15 3.81E-13 view data
SRA716152 SRS3384790 Retinal ganglion cells 7 Retinal ganglion cells 2.18E-38 6.71E-36 view data
SRA716152 SRS3384790 Retinal ganglion cells 8 Retinal ganglion cells 1.97E-37 5.48E-35 view data
SRA716152 SRS3384790 Retinal ganglion cells 9 Retinal ganglion cells 4.05E-41 2.55E-38 view data
SRA716152 SRS3384790 Retinal ganglion cells 10 Retinal ganglion cells 4.59E-41 2.55E-38 view data
SRA716152 SRS3384790 Retinal ganglion cells 11 Retinal ganglion cells 2.46E-29 3.55E-27 view data
SRA716152 SRS3384790 Retinal ganglion cells 12 Retinal ganglion cells 2.97E-40 1.28E-37 view data
SRA716152 SRS3384790 Retinal ganglion cells 14 Retinal ganglion cells 4.37E-7 1.79E-5 view data
SRA716152 SRS3384790 Retinal ganglion cells 16 Retinal ganglion cells 1.12E-33 1.97E-31 view data
SRA716152 SRS3384790 Retinal ganglion cells 18 Retinal ganglion cells 1.18E-5 4.04E-4 view data
SRA716152 SRS3384790 Retinal ganglion cells 19 Retinal ganglion cells 2.25E-35 4.86E-33 view data
SRA716152 SRS3384790 Retinal ganglion cells 20 Retinal ganglion cells 5.82E-40 2.27E-37 view data
SRA203368 SRS866909 Retina 13 Retinal ganglion cells 2.24E-6 2.29E-4 view data