Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for Retinal progenitor cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
0
Mm Hs PAX6 0.049 0 0.889 0.014 0.058 8 Retinal progenitor cells Ectoderm Eye D11S812E,AN2 paired box 6 Yflag
0
Mm Hs CALB2 0.03 0 0.778 0.003 0.037 8 Retinal progenitor cells Ectoderm Eye CAL2 calbindin 2 flag
0
Mm Hs SIX6 0.004 0 0 0 0 3 Retinal progenitor cells Ectoderm Eye Six9,OPTX2 SIX homeobox 6 Yflag
0
Mm Hs SIX3 0.014 0 0 0.003 0 3 Retinal progenitor cells Ectoderm Eye HPE2 SIX homeobox 3 Yflag
0
Mm Hs NEFH 0.009 0 0 0.004 0.011 3 Retinal progenitor cells Ectoderm Eye neurofilament heavy Yflag
0
Mm Hs LGR5 0.002 0 0.667 0 0.002 3 Retinal progenitor cells Ectoderm Eye HG38,FEX,GPR67,GPR49 leucine rich repeat containing G protein-coupled receptor 5 flag
0
Mm Hs SAG 0.005 0 0 0.002 0 3 Retinal progenitor cells Ectoderm Eye ARRESTIN,RP47 S-antigen visual arrestin Yflag
0
Mm Hs RAX 0.006 0 0 0 0 4 Retinal progenitor cells Ectoderm Eye RX retina and anterior neural fold homeobox Yflag
0
Mm Hs NOTCH1 0.007 0 0 0.005 0.008 5 Retinal progenitor cells Ectoderm Eye TAN1 notch 1 Yflag
0
Mm Hs HES1 0.129 0 0 0.146 0.128 4 Retinal progenitor cells Ectoderm Eye FLJ20408,HES-1,Hes1,bHLHb39,HRY hes family bHLH transcription factor 1 flag
0
Mm Hs MSI1 0.022 0 0.111 0.025 0.022 3 Retinal progenitor cells Ectoderm Eye musashi RNA binding protein 1 flag
0
Mm Hs SOX9 0.086 0 0 0.032 0 8 Retinal progenitor cells Ectoderm Eye SRA1,CMD1,CMPD1 SRY-box 9 Yflag
-1
Mm Hs RHO 0.006 0 0 0 0 2 Retinal progenitor cells Ectoderm Eye OPN2,CSNBAD1,RP4 rhodopsin Yflag

Datasets with computationally identified Retinal progenitor cells

SRA SRS tissue cluster cell type p-value FDR View
SRA203368 SRS866908 Retina 9 Retinal progenitor cells 1.53E-8 2.00E-6 view data
SRA203368 SRS866908 Retina 14 Retinal progenitor cells 1.03E-9 1.62E-7 view data
SRA716152 SRS3384790 Retinal ganglion cells 13 Retinal progenitor cells 3.29E-7 1.39E-5 view data
SRA203368 SRS866911 Retina 24 Retinal progenitor cells 1.41E-4 1.13E-2 view data
SRA203368 SRS866909 Retina 10 Retinal progenitor cells 2.19E-8 3.58E-6 view data
SRA203368 SRS866909 Retina 15 Retinal progenitor cells 1.92E-7 2.71E-5 view data
SRA203368 SRS866907 Retina 8 Retinal progenitor cells 1.06E-9 1.79E-7 view data
SRA203368 SRS866907 Retina 15 Retinal progenitor cells 4.47E-4 2.23E-2 view data
SRA203368 SRS866912 Retina 7 Retinal progenitor cells 1.04E-5 8.88E-4 view data