Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for Serotonergic neurons

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
1
Mm Hs FEV 0.003 1 1 0.003 0.003 2 Serotonergic neurons Ectoderm Brain Pet-1 FEV, ETS transcription factor flag
0
Mm Hs SLC6A4 0.002 0 0 0.001 0 3 Serotonergic neurons Ectoderm Brain 5-HTT,SERT1,HTT,OCD1 solute carrier family 6 member 4 Yflag
0
Mm Hs TPH2 0.001 0 0 0 0 2 Serotonergic neurons Ectoderm Brain NTPH,FLJ37295 tryptophan hydroxylase 2 Yflag
0
Mm Hs DDC 0.014 1 1 0.004 0.017 6 Serotonergic neurons Ectoderm Brain AADC dopa decarboxylase Yflag
0
Mm Hs SLC18A2 0.006 0 0 0.001 0 6 Serotonergic neurons Ectoderm Brain SVMT,SVAT,VMAT2 solute carrier family 18 member A2 flag
0
Mm Hs ESM1 0.006 0 0 0.012 0.005 3 Serotonergic neurons Ectoderm Brain endothelial cell specific molecule 1 flag
0
Mm Hs SLC22A3 0.004 0 0 0 0 1 Serotonergic neurons Ectoderm Brain solute carrier family 22 member 3 flag
-1
Mm Hs TPH1 0.002 1 0 0.001 0 4 Serotonergic neurons Ectoderm Brain TPRH,TPH tryptophan hydroxylase 1 flag

Datasets with computationally identified Serotonergic neurons

SRA SRS tissue cluster cell type p-value FDR View
SRA667466 SRS3060013 Ventral midbrain 6 Serotonergic neurons 6.56E-7 1.82E-4 view data
SRA728025 SRS3454424 Colon 13 Serotonergic neurons 2.55E-4 1.08E-2 view data