Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Description: Spermatocytes are a type of early male gametocytes. There are two types of spermatocytes, primary (diploid) and secondary spermatocytes (haploid).

Gene expression markers for Spermatocytes

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
0
Mm Hs SYCP2 0.006 0 0 0.026 0 1 Spermatocytes Mesoderm Reproductive synaptonemal complex protein 2 flag
0
Mm Hs OSR2 0.011 0.219 0 0.016 0.009 2 Spermatocytes Mesoderm Reproductive FLJ90037 odd-skipped related transciption factor 2 flag
0
Mm Hs TNP1 0.018 0.813 0 0.062 0 2 Spermatocytes Mesoderm Reproductive transition protein 1 flag
0
Mm Hs IGF2 0.013 0.156 0 0.045 0.001 8 Spermatocytes Mesoderm Reproductive FLJ44734,IGF-II,C11orf43 insulin like growth factor 2 Yflag
0
Mm Hs PRM2 0.022 1 0 0.08 0.009 2 Spermatocytes Mesoderm Reproductive CT94.2 protamine 2 flag
0
Mm Hs PRM1 0.022 1 0 0.084 0.009 2 Spermatocytes Mesoderm Reproductive CT94.1 protamine 1 flag
0
Mm Hs INHBB 0.005 0 0 0.003 0.005 2 Spermatocytes Mesoderm Reproductive inhibin subunit beta B flag
0
Mm Hs CD46 0.014 0 0 0.079 0.001 4 Spermatocytes Mesoderm Reproductive TRA2.10,MGC26544,MIC10 CD46 molecule Yflag
0
Mm Hs TEX101 0.005 0.031 0 0.01 0 2 Spermatocytes Mesoderm Reproductive MGC4766,SGRG,CT131,SPATA44 testis expressed 101 flag
0
Mm Hs TXNDC8 0.005 0 0 0.013 0 1 Spermatocytes Mesoderm Reproductive bA427L11.2,TRX6,SPTRX-3 thioredoxin domain containing 8 flag
0
Mm Hs SYCP3 0.003 0 0 0.012 0 1 Spermatocytes Mesoderm Reproductive synaptonemal complex protein 3 Yflag
0
Mm Hs CAPN1 0.018 0 0 0.048 0.011 3 Spermatocytes Mesoderm Reproductive muCANP,muCL,CANPL1 calpain 1 flag
0
Mm Hs SYCP1 0.008 0 0 0.025 0 2 Spermatocytes Mesoderm Reproductive HOM-TES-14,CT8 synaptonemal complex protein 1 flag
0
Mm Hs ACR 0.003 0 0 0.008 0.002 1 Spermatocytes Mesoderm Reproductive acrosin flag
0
Mm Hs PGK2 0.012 0 0 0.034 0.008 2 Spermatocytes Mesoderm Reproductive PGKPS,PGK-2 phosphoglycerate kinase 2 flag
0
Hs TP73 0 0 0 0.001 0 1 Spermatocytes Mesoderm Reproductive P73 tumor protein p73 flag
0
Hs GCNA 0 0 0 0.002 0 2 Spermatocytes Mesoderm Reproductive NAAR1,ACRC germ cell nuclear acidic peptidase flag
0
Mm Hs NOTCH3 0.02 0 0 0.015 0.022 8 Spermatocytes Mesoderm Reproductive CASIL,CADASIL notch 3 Yflag
0
Mm Hs SPATA33 0.023 0 0 0.071 0 2 Spermatocytes Mesoderm Reproductive FLJ31606,C16orf55 spermatogenesis associated 33 flag
0
Mm Hs GKAP1 0.037 0 0 0.054 0.036 1 Spermatocytes Mesoderm Reproductive GKAP42,FKSG21 G kinase anchoring protein 1 flag
0
Mm Hs SMCP 0.013 0.125 0 0.038 0 2 Spermatocytes Mesoderm Reproductive sperm mitochondria associated cysteine rich protein flag
0
Mm Hs JAKMIP1 0.017 0 0 0.001 0.021 2 Spermatocytes Mesoderm Reproductive MARLIN1,JAMIP1,Gababrbp,FLJ31564 janus kinase and microtubule interacting protein 1 flag

Datasets with computationally identified Spermatocytes

SRA SRS tissue cluster cell type p-value FDR View
SRA645804 SRS2823412 Testis 17 Spermatocytes 9.07E-6 9.79E-4 view data
SRA667709 SRS3065430 Testicle 0 Spermatocytes 3.95E-7 8.19E-5 view data
SRA667709 SRS3065430 Testicle 5 Spermatocytes 3.94E-7 8.19E-5 view data
SRA667709 SRS3065430 Testicle 9 Spermatocytes 4.50E-7 8.85E-5 view data
SRA667709 SRS3065430 Testicle 11 Spermatocytes 4.84E-6 6.04E-4 view data
SRA667709 SRS3065430 Testicle 12 Spermatocytes 8.68E-6 1.05E-3 view data
SRA667709 SRS3065430 Testicle 14 Spermatocytes 3.42E-7 8.00E-5 view data
SRA667709 SRS3065430 Testicle 16 Spermatocytes 2.63E-5 2.80E-3 view data
SRA667709 SRS3065430 Testicle 20 Spermatocytes 5.33E-4 4.74E-2 view data
SRA645804 SRS2823408 Testis 17 Spermatocytes 2.65E-6 3.01E-4 view data
SRA826293 SRS4181127 Testis 15 Spermatocytes 3.25E-4 2.68E-2 view data
SRA645804 SRS2823407 Testis 13 Spermatocytes 8.09E-5 6.74E-3 view data
SRA645804 SRS2823407 Testis 20 Spermatocytes 2.15E-6 2.34E-4 view data
SRA645804 SRS2823409 Testis 17 Spermatocytes 1.38E-6 1.56E-4 view data
SRA667709 SRS3065428 Testicle 3 Spermatocytes 4.67E-6 5.86E-4 view data
SRA667709 SRS3065428 Testicle 7 Spermatocytes 8.42E-5 8.22E-3 view data
SRA667709 SRS3065428 Testicle 8 Spermatocytes 7.28E-6 8.16E-4 view data
SRA667709 SRS3065428 Testicle 12 Spermatocytes 5.83E-5 5.88E-3 view data
SRA667709 SRS3065431 Testicle 0 Spermatocytes 1.59E-6 2.13E-4 view data
SRA667709 SRS3065431 Testicle 3 Spermatocytes 3.96E-7 7.04E-5 view data
SRA667709 SRS3065431 Testicle 4 Spermatocytes 1.54E-5 1.74E-3 view data
SRA667709 SRS3065431 Testicle 13 Spermatocytes 6.03E-5 5.37E-3 view data
SRA667709 SRS3065431 Testicle 14 Spermatocytes 3.44E-7 6.43E-5 view data
SRA667709 SRS3065431 Testicle 17 Spermatocytes 1.36E-4 1.10E-2 view data
SRA667709 SRS3065429 Testicle 0 Spermatocytes 3.82E-6 3.80E-4 view data
SRA667709 SRS3065429 Testicle 3 Spermatocytes 1.32E-4 9.46E-3 view data
SRA667709 SRS3065429 Testicle 10 Spermatocytes 3.67E-7 4.78E-5 view data
SRA667709 SRS3065429 Testicle 16 Spermatocytes 6.98E-5 5.75E-3 view data
SRA667709 SRS3065427 Testicle 0 Spermatocytes 2.33E-4 1.59E-2 view data
SRA667709 SRS3065427 Testicle 11 Spermatocytes 8.05E-5 6.29E-3 view data
SRA667709 SRS3065426 Testicle 0 Spermatocytes 9.93E-5 1.06E-2 view data
SRA667709 SRS3065426 Testicle 12 Spermatocytes 1.07E-6 1.63E-4 view data