Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for Stromal cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
2
Hs MMP1 0.003 0 0 0.016 0 1 Stromal cells Mesoderm Connective tissue matrix metallopeptidase 1 Yflag
0
Mm Hs LAMC2 0.012 0 0 0.023 0.01 4 Stromal cells Mesoderm Connective tissue nicein-100kDa,kalinin-105kDa,BM600-100kDa,EBR2,LAMB2T,LAMNB2,EBR2A laminin subunit gamma 2 Yflag
0
Mm Hs TLR4 0 0 0 0 0 10 Stromal cells Mesoderm Connective tissue hToll,CD284,TLR-4,ARMD10 toll like receptor 4 Yflag
0
Mm Hs CDH11 0.039 0 1 0.052 0.036 3 Stromal cells Mesoderm Connective tissue CAD11 cadherin 11 flag
0
Mm Hs CALB2 0.03 0 0 0.003 0.037 8 Stromal cells Mesoderm Connective tissue CAL2 calbindin 2 flag
0
Mm Hs DES 0.021 0 0 0.009 0.023 11 Stromal cells Mesoderm Connective tissue CMD1I,CSM1,CSM2 desmin Yflag
0
Mm Hs MMRN2 0.022 0 0 0.008 0.026 2 Stromal cells Mesoderm Connective tissue EndoGlyx-1,FLJ13465,EMILIN3 multimerin 2 flag
0
Mm Hs CD248 0.022 0 0 0.014 0.024 3 Stromal cells Mesoderm Connective tissue TEM1,CD164L1 CD248 molecule flag
0
Mm Hs FAP 0.006 0 0 0.003 0.007 4 Stromal cells Mesoderm Connective tissue fibroblast activation protein alpha flag
0
Mm Hs TLR2 0.014 0 0 0.001 0 8 Stromal cells Mesoderm Connective tissue TIL4,CD282 toll like receptor 2 Yflag
0
Mm Hs TNC 0.033 0 0 0.013 0 2 Stromal cells Mesoderm Connective tissue MGC167029,HXB,DFNA56 tenascin C Yflag
0
Mm Hs LUM 0.051 0 0 0.087 0.043 4 Stromal cells Mesoderm Connective tissue SLRR2D,LDC lumican flag
0
Mm Hs COL15A1 0.016 0 0 0.028 0.014 3 Stromal cells Mesoderm Connective tissue collagen type XV alpha 1 chain flag
0
Mm Hs GDF10 0.005 0 0 0 0.007 3 Stromal cells Mesoderm Connective tissue BMP-3b growth differentiation factor 10 flag
0
Mm Hs COL4A1 0.105 0 0.2 0.081 0.113 3 Stromal cells Mesoderm Connective tissue collagen type IV alpha 1 chain Yflag
0
Mm Hs BMP4 0.019 0 0.4 0.024 0.016 6 Stromal cells Mesoderm Connective tissue BMP2B bone morphogenetic protein 4 Yflag
0
Mm Hs BMP5 0.002 0 0 0.007 0.001 2 Stromal cells Mesoderm Connective tissue bone morphogenetic protein 5 flag
0
Mm Hs B4GALNT1 0.003 0 0 0 0.004 1 Stromal cells Mesoderm Connective tissue beta1-4GalNAc-T,GALGT,SPG26 beta-1,4-N-acetyl-galactosaminyltransferase 1 Yflag
0
Mm Hs MMP2 0.045 0 0 0.068 0.039 4 Stromal cells Mesoderm Connective tissue TBE-1,CLG4,CLG4A matrix metallopeptidase 2 Yflag
0
Mm Hs MMP9 0.015 0 0 0.01 0.017 6 Stromal cells Mesoderm Connective tissue CLG4B matrix metallopeptidase 9 Yflag
0
Mm Hs TLR3 0.003 0 0 0.007 0 3 Stromal cells Mesoderm Connective tissue CD283 toll like receptor 3 Yflag
0
Mm Hs MME 0.017 0 0.2 0.027 0.015 5 Stromal cells Mesoderm Connective tissue CALLA,CD10 membrane metalloendopeptidase Yflag
0
Mm Hs PECAM1 0.051 0 0 0.044 0.054 8 Stromal cells Mesoderm Connective tissue CD31 platelet and endothelial cell adhesion molecule 1 flag
0
Mm Hs ITGA4 0.036 0 0 0.011 0.041 7 Stromal cells Mesoderm Connective tissue CD49d,CD49D integrin subunit alpha 4 flag
0
Hs ICAM3 0 0 0 0 0 1 Stromal cells Mesoderm Connective tissue CDW50,ICAM-R,CD50 intercellular adhesion molecule 3 flag
0
Mm Hs ITGAV 0.026 0 0 0.022 0.028 3 Stromal cells Mesoderm Connective tissue CD51,VNRA,MSK8,VTNR integrin subunit alpha V flag
0
Mm Hs ICAM1 0.009 0 0 0.006 0.01 8 Stromal cells Mesoderm Connective tissue CD54 intercellular adhesion molecule 1 Yflag
0
Mm Hs VCAM1 0.041 0 0 0.007 0 6 Stromal cells Mesoderm Connective tissue CD106 vascular cell adhesion molecule 1 flag
0
Mm Hs KIT 0.015 0 0 0.003 0.019 10 Stromal cells Mesoderm Connective tissue CD117,SCFR,C-Kit,PBT KIT proto-oncogene receptor tyrosine kinase Yflag
0
Mm Hs PDGFRA 0.044 0 0 0.048 0.044 6 Stromal cells Mesoderm Connective tissue CD140a,PDGFR2,GAS9 platelet derived growth factor receptor alpha Yflag
0
Mm Hs PDGFRB 0.033 0 0.8 0.036 0.033 7 Stromal cells Mesoderm Connective tissue JTK12,CD140b,PDGFR1,PDGFR platelet derived growth factor receptor beta Yflag
0
Mm Hs MADCAM1 0.001 0 0 0.002 0.001 2 Stromal cells Mesoderm Connective tissue MACAM1 mucosal vascular addressin cell adhesion molecule 1 flag
0
Mm Hs TLR1 0 0 0 0 0 2 Stromal cells Mesoderm Connective tissue rsc786,KIAA0012,CD281 toll like receptor 1 Yflag
-1
Mm Hs SNED1 0.001 0 0 0 0 1 Stromal cells Mesoderm Connective tissue FLJ00133,SST3,Snep sushi, nidogen and EGF like domains 1 flag
-1
Mm Hs WNT2 0.004 0 0 0.008 0 1 Stromal cells Mesoderm Connective tissue IRP,INT1L1 Wnt family member 2 flag

Datasets with computationally identified Stromal cells

SRA SRS tissue cluster cell type p-value FDR View
SRA815866 SRS4088855 Bone marrow 5 Stromal cells 1.73E-4 1.77E-2 view data
SRA815866 SRS4088855 Bone marrow 12 Stromal cells 2.49E-4 2.27E-2 view data
SRA815866 SRS4088856 Bone marrow 7 Stromal cells 2.30E-4 1.82E-2 view data
SRA645056 SRS2819414 Bone marrow 2 Stromal cells 2.26E-4 2.85E-2 view data
SRA645056 SRS2819414 Bone marrow 3 Stromal cells 3.34E-4 3.86E-2 view data