Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

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Gene expression markers for T helper cells

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
8
Mm Hs CD4 0.009 0 0 0.019 0.008 9 T helper cells Mesoderm Immune system CD4 molecule Yflag
5
Mm Hs CCR4 0 0 0 0.001 0 3 T helper cells Mesoderm Immune system CC-CKR-4,CMKBR4,CKR4,k5-5,ChemR13,CD194 C-C motif chemokine receptor 4 flag
2
Mm Hs IL13 0.004 0 0 0.019 0.001 2 T helper cells Mesoderm Immune system P600,IL-13,ALRH,BHR1,MGC116786,MGC116788,MGC116789 interleukin 13 Yflag
2
Mm Hs CD28 0.011 0 0 0.003 0.013 6 T helper cells Mesoderm Immune system CD28 molecule flag
2
Mm Hs CD3G 0.048 0 0 0.085 0.041 5 T helper cells Mesoderm Immune system CD3g molecule Yflag
1
Mm Hs IL2 0.001 0 0 0 0.001 1 T helper cells Mesoderm Immune system IL-2,TCGF interleukin 2 flag
1
Mm Hs CCR6 0.001 0 0 0 0.002 4 T helper cells Mesoderm Immune system CKR-L3,GPR-CY4,CMKBR6,GPR29,DRY-6,DCR2,BN-1,CD196,STRL22 C-C motif chemokine receptor 6 flag
1
Mm Hs CD3D 0.053 0 0 0.129 0.038 5 T helper cells Mesoderm Immune system T3D CD3d molecule Yflag
1
Mm Hs KLRB1 0.008 0 0 0.048 0.001 4 T helper cells Mesoderm Immune system CD161,NKR-P1,NKR-P1A,hNKR-P1A,CLEC5B killer cell lectin like receptor B1 flag
1
CD3 0 NA NA NA NA 1 T helper cells Mesoderm Immune system flag
1
Mm Hs CCR5 0.015 0 0 0 0.018 6 T helper cells Mesoderm Immune system CKR-5,CC-CKR-5,CKR5,CD195,IDDM22,CMKBR5 C-C motif chemokine receptor 5 (gene/pseudogene) Yflag
1
Mm Hs RORC 0.004 0 0 0 0 1 T helper cells Mesoderm Immune system RZRG,RORG,NR1F3,TOR RAR related orphan receptor C Yflag
1
Mm Hs CXCR3 0.005 0 0 0.005 0.005 4 T helper cells Mesoderm Immune system CKR-L2,CMKAR3,IP10-R,MigR,CD183,GPR9 C-X-C motif chemokine receptor 3 flag
0
Mm Hs CD38 0.016 0 0 0.014 0.016 6 T helper cells Mesoderm Immune system CD38 molecule flag
0
Mm Hs CCR10 0.002 0 0 0.003 0.001 2 T helper cells Mesoderm Immune system GPR2 C-C motif chemokine receptor 10 flag
0
Mm Hs RORA 0.045 0 0 0.014 0 7 T helper cells Mesoderm Immune system RZRA,ROR1,ROR2,ROR3,NR1F1 RAR related orphan receptor A flag
0
Mm Hs IL22 0 0 0 0 0 1 T helper cells Mesoderm Immune system ILTIF,zcyto18,IL-TIF,IL-D110,TIFa,TIFIL-23,MGC79382,MGC79384 interleukin 22 flag
0
Mm Hs PPARG 0.006 0 0 0.011 0.005 8 T helper cells Mesoderm Immune system PPARG1,PPARG2,NR1C3,PPARgamma peroxisome proliferator activated receptor gamma Yflag
0
Mm Hs IL21 0 0 0 0 0 1 T helper cells Mesoderm Immune system Za11 interleukin 21 Yflag
0
Mm Hs IL9 0 0 0 0 0 1 T helper cells Mesoderm Immune system IL-9,HP40 interleukin 9 flag
0
Mm Hs CD2 0.04 0 0 0.094 0.03 9 T helper cells Mesoderm Immune system CD2 molecule flag
0
Mm Hs CD5 0.004 0 0 0.004 0.004 4 T helper cells Mesoderm Immune system CD5 molecule flag
0
Mm Hs IL1RL1 0.007 0 0 0.015 0.005 3 T helper cells Mesoderm Immune system ST2,FIT-1,ST2V,DER4,IL33R interleukin 1 receptor like 1 flag
0
Mm Hs FOXP3 0 0 0 0 0 2 T helper cells Mesoderm Immune system JM2,XPID,AIID,PIDX,DIETER,SCURFIN,IPEX forkhead box P3 Yflag
0
Mm Hs TNFRSF4 0.006 0 0 0.015 0 3 T helper cells Mesoderm Immune system ACT35,OX40,CD134,TXGP1L TNF receptor superfamily member 4 Yflag
0
Mm IL4RA 0.013 0 0 0 0.017 5 T helper cells Mesoderm Immune system interleukin 4 receptor, alpha flag
0
Mm Hs CD40LG 0.003 0 0 0.01 0.001 3 T helper cells Mesoderm Immune system CD40L,gp39,hCD40L,CD154,HIGM1,IMD3,TNFSF5 CD40 ligand Yflag
0
Mm Hs IL17RB 0.001 0 0 0 0.001 4 T helper cells Mesoderm Immune system IL17RH1,EVI27,CRL4,IL17BR interleukin 17 receptor B flag
0
Mm Hs HPGDS 0.033 0 0 0.018 0.037 4 T helper cells Mesoderm Immune system GSTS,H-PGDS,PGD2,GSTS1-1,GSTS1 hematopoietic prostaglandin D synthase flag
0
Mm Hs NFATC2 0.001 0 0 0 0.001 2 T helper cells Mesoderm Immune system NF-ATP,NFATp,NFAT1 nuclear factor of activated T cells 2 flag
0
Mm Hs NFKB1 0.028 0 0 0.026 0.028 3 T helper cells Mesoderm Immune system KBF1,NFKB-p50,NF-kappaB,NFkappaB,NF-kB1 nuclear factor kappa B subunit 1 Yflag
0
Mm Hs NR3C1 0.069 0 0 0.055 0.074 2 T helper cells Mesoderm Immune system GR,GRL nuclear receptor subfamily 3 group C member 1 Yflag
0
Mm Hs IFNG 0.003 0 0 0.013 0.002 3 T helper cells Mesoderm Immune system interferon gamma Yflag
0
Mm Hs IL6 0.007 0 0 0.013 0.006 6 T helper cells Mesoderm Immune system IL-6,BSF2,HSF,IFNB2 interleukin 6 Yflag
0
Mm Hs TBX21 0 0 0 0 0 3 T helper cells Mesoderm Immune system TBLYM,T-bet T-box 21 Yflag
0
Mm Hs DPP4 0.02 0 0 0.013 0.021 9 T helper cells Mesoderm Immune system CD26,ADCP2 dipeptidyl peptidase 4 flag
0
Mm Hs KLRD1 0.02 0 0 0.039 0.017 3 T helper cells Mesoderm Immune system CD94 killer cell lectin like receptor D1 flag
0
Mm Hs CCR1 0.014 0 0 0.005 0.014 4 T helper cells Mesoderm Immune system MIP1aR,CD191,SCYAR1,CMKBR1 C-C motif chemokine receptor 1 flag
0
Mm Hs TNFSF11 0.001 0 0 0 0 2 T helper cells Mesoderm Immune system TRANCE,RANKL,OPGL,ODF,CD254 TNF superfamily member 11 Yflag
0
Mm Hs HAVCR2 0.003 0 0 0.005 0.003 1 T helper cells Mesoderm Immune system Tim-3,TIM3,FLJ14428,TIMD3,CD366 hepatitis A virus cellular receptor 2 flag
0
Mm Hs IL18R1 0.013 0 0 0.001 0.017 3 T helper cells Mesoderm Immune system IL1RRP,IL-1Rrp,CD218a interleukin 18 receptor 1 flag
0
Mm Hs LTBR 0.024 0 0 0.018 0.025 2 T helper cells Mesoderm Immune system TNFCR,TNFR-RP,TNFR2-RP,TNF-R-III,TNFRSF3,D12S370 lymphotoxin beta receptor flag
0
Mm Hs TNF 0.008 0 0 0.001 0 6 T helper cells Mesoderm Immune system TNFSF2,DIF,TNF-alpha,TNFA tumor necrosis factor Yflag
0
Mm Hs LTA 0.001 0 0 0.004 0 1 T helper cells Mesoderm Immune system TNFSF1,LT,TNFB lymphotoxin alpha Yflag
0
Mm Hs GATA3 0.03 0 0 0.02 0.03 7 T helper cells Mesoderm Immune system HDR GATA binding protein 3 Yflag
0
Mm Hs CSF2 0.002 0 0 0.009 0.001 4 T helper cells Mesoderm Immune system GM-CSF,GMCSF colony stimulating factor 2 flag
0
Mm Hs IL4 0.002 0 0 0 0.003 4 T helper cells Mesoderm Immune system BSF1,IL-4,BCGF1,BCGF-1,MGC79402 interleukin 4 flag
0
Mm Hs IL5 0.002 0 0 0.006 0.001 3 T helper cells Mesoderm Immune system IL-5,EDF interleukin 5 flag
0
Mm Hs IL17F 0 0 0 0 0.001 1 T helper cells Mesoderm Immune system IL-17F,ML1 interleukin 17F Yflag
0
Mm Hs IL10 0.001 0 0 0 0.001 2 T helper cells Mesoderm Immune system CSIF,IL10A,IL-10 interleukin 10 Yflag
0
Mm Hs CCR8 0.002 0 0 0 0.002 1 T helper cells Mesoderm Immune system CY6,TER1,CKR-L1,GPR-CY6,CDw198,CMKBRL2,CMKBR8 C-C motif chemokine receptor 8 flag
0
Mm Hs CXCR4 0.04 0 0 0.198 0.009 18 T helper cells Mesoderm Immune system LESTR,NPY3R,HM89,NPYY3R,D2S201E,fusin,HSY3RR,CD184 C-X-C motif chemokine receptor 4 Yflag
0
Mm Hs CCR3 0.001 0 0 0 0.001 6 T helper cells Mesoderm Immune system CC-CKR-3,CKR3,CD193,CMKBR3 C-C motif chemokine receptor 3 flag
0
Mm Hs CCR7 0.016 0 0 0.042 0.011 10 T helper cells Mesoderm Immune system BLR2,CDw197,CD197,CMKBR7,EBI1 C-C motif chemokine receptor 7 flag
0
Mm Hs ICOS 0.01 0 0 0.007 0.011 5 T helper cells Mesoderm Immune system AILIM,CD278 inducible T cell costimulator Yflag
0
Mm Hs PTGDR2 0 0 0 0 0 2 T helper cells Mesoderm Immune system CRTH2,CD294,GPR44 prostaglandin D2 receptor 2 flag
0
Mm Hs HAVCR1 0.001 0 0 0 0.001 1 T helper cells Mesoderm Immune system HAVCR-1,TIM-1,HAVCR,TIMD1,CD365,KIM1 hepatitis A virus cellular receptor 1 Yflag
0
Mm Hs IL1R2 0.007 0 0 0.007 0.007 2 T helper cells Mesoderm Immune system CD121b,IL1RB interleukin 1 receptor type 2 flag
0
Mm Hs IRF4 0.003 0 0 0.008 0.001 2 T helper cells Mesoderm Immune system LSIRF,MUM1 interferon regulatory factor 4 Yflag
0
Mm Hs STAT6 0.01 0 0 0.008 0 2 T helper cells Mesoderm Immune system D12S1644,IL-4-STAT signal transducer and activator of transcription 6 flag
0
Mm Hs IL17A 0 0 0 0 0 3 T helper cells Mesoderm Immune system IL-17A,IL-17,CTLA8,IL17 interleukin 17A flag
-2
Mm Hs AHR 0.007 0 0 0.011 0.007 8 T helper cells Mesoderm Immune system bHLHe76 aryl hydrocarbon receptor flag

Datasets with computationally identified T helper cells

No data identified with this cell type.