Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8230 associations (178 cell types, 4644 gene symbols, 29 tissues); Last updated: 15/08/2019 11:25:44 CET

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Description: Tanycytes are special ependymal cells found in the third ventricle of the brain, and on the floor of the fourth ventricle and have processes extending deep into the hypothalamus. It is possible that their function is to transfer chemical signals from the cerebrospinal fluid to the central nervous system.

Gene expression markers for Tanycytes

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
0
Mm Hs VCAN 0.056 NA NA 0.097 0.045 4 Tanycytes Ectoderm Brain PG-M,CSPG2 versican Yflag
0
Mm Hs TGFB2 0.041 NA 0.19 0.002 0.051 2 Tanycytes Ectoderm Brain transforming growth factor beta 2 Yflag
0
Mm Hs CTGF 0.028 NA 0.095 0.1 0.012 11 Tanycytes Ectoderm Brain IGFBP8,CCN2 connective tissue growth factor flag
0
Mm Hs RGS7BP 0.034 NA 0.048 NA 0.043 4 Tanycytes Ectoderm Brain R7BP regulator of G protein signaling 7 binding protein flag
0
Mm Hs RGCC 0.14 NA 0.429 0.128 0.146 2 Tanycytes Ectoderm Brain bA157L14.2,RGC-32,RGC32,C13orf15 regulator of cell cycle flag
0
Mm Hs IGFBP5 0.075 NA 0.381 0.093 0.07 2 Tanycytes Ectoderm Brain insulin like growth factor binding protein 5 flag
0
Mm Hs MEST 0.039 NA 0.048 0.104 0.021 3 Tanycytes Ectoderm Brain PEG1 mesoderm specific transcript flag
0
Mm FNDC3C1 0.001 NA 0.381 NA 0.001 1 Tanycytes Ectoderm Brain fibronectin type III domain containing 3C1 flag
0
Mm Hs SCN7A 0.017 NA 0.429 0.008 0.019 4 Tanycytes Ectoderm Brain Nav2.1,Nav2.2,NaG,SCN6A sodium voltage-gated channel alpha subunit 7 flag
0
Mm Hs SPRR1A 0.004 NA NA 0.001 0.005 2 Tanycytes Ectoderm Brain small proline rich protein 1A flag
0
Mm Hs ADM 0.026 NA NA 0.064 0.018 5 Tanycytes Ectoderm Brain AM adrenomedullin flag
0
Mm Hs CACNA2D2 0.027 NA 0.048 0.001 0.034 5 Tanycytes Ectoderm Brain KIAA0558 calcium voltage-gated channel auxiliary subunit alpha2delta 2 flag
0
Mm Hs PENK 0.02 NA NA 0.028 0.02 5 Tanycytes Ectoderm Brain proenkephalin flag
0
Mm Hs FRZB 0.012 NA 0.286 0.03 0.008 4 Tanycytes Ectoderm Brain FRZB-PEN,FRZB1,SRFP3,FRP-3,SFRP3,FRE,FRITZ,FRZB-1,FZRB,hFIZ frizzled related protein Yflag
0
Mm Hs GPR50 0.001 NA 0.619 NA 0.001 1 Tanycytes Ectoderm Brain H9,Mel1c G protein-coupled receptor 50 flag
0
Mm Hs CRYM 0.015 NA 0.286 0.002 0.019 2 Tanycytes Ectoderm Brain DFNA40 crystallin mu Yflag
0
Mm CD59A 0.033 NA 0.095 NA 0.041 5 Tanycytes Ectoderm Brain CD59a antigen flag
0
Mm Hs PRDX6 0.396 NA 1 0.474 0.369 2 Tanycytes Ectoderm Brain AOP2,KIAA0106,1-Cys,NSGPx,PRX,aiPLA2,MGC46173 peroxiredoxin 6 flag
0
Mm Hs RAX 0.006 NA NA NA NA 4 Tanycytes Ectoderm Brain RX retina and anterior neural fold homeobox Yflag
0
Mm Hs COL25A1 0.008 NA 0.381 0.01 0.007 1 Tanycytes Ectoderm Brain collagen type XXV alpha 1 chain Yflag
0
Mm Hs SLC17A8 0.001 NA 0.048 NA 0.001 2 Tanycytes Ectoderm Brain VGLUT3,DFNA25 solute carrier family 17 member 8 Yflag
0
Mm Hs PTN 0.313 NA 1 0.091 0.369 3 Tanycytes Ectoderm Brain HBNF,HBGF8,NEGF1 pleiotrophin flag
0
Mm Hs LHX2 0.092 NA 0.048 0.005 0.114 1 Tanycytes Ectoderm Brain LH-2,hLhx2 LIM homeobox 2 flag
0
Mm Hs SLC16A2 0.023 NA 0.952 0.003 0.026 4 Tanycytes Ectoderm Brain XPCT,MCT8,DXS128,AHDS,MRX22 solute carrier family 16 member 2 Yflag
0
Mm Hs COL23A1 0.005 NA 0.952 NA 0.005 1 Tanycytes Ectoderm Brain DKFZp434K0621 collagen type XXIII alpha 1 chain flag
0
Mm Hs DIO2 0.003 NA 0.429 0.006 0.002 2 Tanycytes Ectoderm Brain TXDI2,SelY iodothyronine deiodinase 2 flag
0
Mm Hs DRD2 0 NA NA NA 0.001 2 Tanycytes Ectoderm Brain dopamine receptor D2 Yflag

Datasets with computationally identified Tanycytes

SRA SRS tissue cluster cell type p-value FDR View
SRA526019 SRS1913125 Arcuate-median eminence 1 Tanycytes 1.02E-5 1.50E-3 view data
SRA526019 SRS1913125 Arcuate-median eminence 7 Tanycytes 1.81E-7 3.53E-5 view data
SRA526019 SRS1913130 Arcuate-median eminence 3 Tanycytes 2.21E-4 2.52E-2 view data
SRA526019 SRS1913130 Arcuate-median eminence 4 Tanycytes 9.37E-8 2.07E-5 view data
SRA526019 SRS1913121 Arcuate-median eminence 3 Tanycytes 1.58E-10 4.38E-8 view data
SRA526019 SRS1913122 Arcuate-median eminence 7 Tanycytes 7.65E-9 2.68E-6 view data
SRA850127 SRS4376745 Hypothalamus 3 Tanycytes 2.26E-4 2.74E-2 view data
SRA526019 SRS1913127 Arcuate-median eminence 3 Tanycytes 2.38E-7 7.94E-5 view data
SRA526019 SRS1913127 Arcuate-median eminence 8 Tanycytes 2.41E-8 8.94E-6 view data
SRA526019 SRS1913127 Arcuate-median eminence 16 Tanycytes 1.49E-4 2.50E-2 view data
SRA526019 SRS1913123 Arcuate-median eminence 0 Tanycytes 1.07E-5 2.11E-3 view data
SRA526019 SRS1913123 Arcuate-median eminence 3 Tanycytes 1.22E-7 2.91E-5 view data
SRA526019 SRS1913123 Arcuate-median eminence 5 Tanycytes 2.00E-4 3.18E-2 view data
SRA526019 SRS1913129 Arcuate-median eminence 2 Tanycytes 9.30E-6 2.13E-3 view data
SRA526019 SRS1913131 Arcuate-median eminence 3 Tanycytes 6.03E-5 1.05E-2 view data
SRA667466 SRS3060056 Enteric nervous system 3 Tanycytes 7.79E-6 9.84E-4 view data
SRA850127 SRS4376744 Hypothalamus 1 Tanycytes 3.42E-4 4.38E-2 view data
SRA850127 SRS4376744 Hypothalamus 11 Tanycytes 8.27E-9 2.21E-6 view data
SRA526019 SRS1913124 Arcuate-median eminence 0 Tanycytes 1.44E-5 2.33E-3 view data
SRA526019 SRS1913124 Arcuate-median eminence 4 Tanycytes 7.91E-9 1.47E-6 view data
SRA526019 SRS1913124 Arcuate-median eminence 5 Tanycytes 4.34E-5 6.50E-3 view data