Cell type gene expression markers


This is a list of gene expression markers are used to define cell types. Green rows indicate canonical markers (classical markers used to define the cell type).

Summary: 8286 associations (178 cell types, 4679 gene symbols, 29 tissues); Last updated: 27/03/2020 10:44:00 CET

Filter

get tsv file add marker
Description: Neurons of the Trigeminal ganglion (relaying sensation in the face and motor functions).

Gene expression markers for Trigeminal neurons

Vote(s) Species Official gene symbol UI Sensitivity (human) Sensitivity (mouse) Specificity (human) Specificity (mouse) Marker count Cell type Germ layer Organ Aliases Product description Disease Action
0
Mm Hs FGF13 0.022 0 0.841 0.001 0.023 1 Trigeminal neurons Ectoderm Brain FHF2,FGF2 fibroblast growth factor 13 flag
0
Mm Hs CREBRF 0.009 0 0.125 0.014 0.007 1 Trigeminal neurons Ectoderm Brain C5orf41 CREB3 regulatory factor flag
0
Mm Hs KCNAB2 0.018 0 0.659 0.011 0.015 1 Trigeminal neurons Ectoderm Brain AKR6A5,KCNA2B,HKvbeta2.1,HKvbeta2.2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 flag
0
Mm Hs ATL1 0.017 0 0.648 0.003 0.017 1 Trigeminal neurons Ectoderm Brain AD-FSP,SPG3,SPG3A atlastin GTPase 1 Yflag
0
Mm Hs HSPB8 0.024 0 0.727 0.006 0.024 2 Trigeminal neurons Ectoderm Brain H11,E2IG1,HSP22,HspB8,CMT2L heat shock protein family B (small) member 8 Yflag
0
Mm Hs FKBP1B 0.02 0 0.716 0.02 0.014 1 Trigeminal neurons Ectoderm Brain OTK4,FKBP12.6,FKBP9,FKBP1L FK506 binding protein 1B flag
0
Mm Hs TLN2 0.024 0 0 0.007 0 1 Trigeminal neurons Ectoderm Brain KIAA0320 talin 2 flag
0
Mm Hs SYNM 0.017 0 0 0.001 0 2 Trigeminal neurons Ectoderm Brain KIAA0353,DMN synemin flag
0
Mm Hs GDAP1 0.021 0 0.523 0.008 0.021 1 Trigeminal neurons Ectoderm Brain CMT4,CMT2K,CMT4A ganglioside induced differentiation associated protein 1 Yflag
0
Mm Hs DGKZ 0.025 0 0.682 0.003 0.026 1 Trigeminal neurons Ectoderm Brain DAGK5,hDGKzeta,DGK-ZETA diacylglycerol kinase zeta flag
0
Mm Hs PRUNE2 0.033 0 0.989 0.007 0.035 2 Trigeminal neurons Ectoderm Brain BMCC1,BNIPXL,A214N16.3,bA214N16.3,C9orf65,KIAA0367 prune homolog 2 flag
0
Mm Hs SLC17A6 0.016 0 0 0 0 6 Trigeminal neurons Ectoderm Brain DNPI,VGLUT2 solute carrier family 17 member 6 flag
0
Mm Hs PHF24 0.011 0 0.716 0 0.01 1 Trigeminal neurons Ectoderm Brain KIAA1045 PHD finger protein 24 flag
0
Mm Hs DGKH 0.022 0 0.943 0.007 0.021 1 Trigeminal neurons Ectoderm Brain DGKeta diacylglycerol kinase eta flag
0
Mm Hs CPNE3 0.061 0 0.67 0.067 0.053 1 Trigeminal neurons Ectoderm Brain copine 3 flag
0
Mm Hs CCDC92 0.026 0 0.625 0.016 0.026 1 Trigeminal neurons Ectoderm Brain FLJ22471 coiled-coil domain containing 92 flag
0
Mm Hs SNCG 0.03 0 0 0.038 0 4 Trigeminal neurons Ectoderm Brain BCSG1,SR,persyn synuclein gamma flag
0
Mm Hs NICN1 0.022 0 0.67 0 0.024 2 Trigeminal neurons Ectoderm Brain MGC12936 nicolin 1 flag
0
Mm Hs RGS7BP 0.034 0 0 0 0 4 Trigeminal neurons Ectoderm Brain R7BP regulator of G protein signaling 7 binding protein flag
0
Mm Hs ADD2 0.029 0 0.659 0.014 0.03 1 Trigeminal neurons Ectoderm Brain ADDB adducin 2 flag
0
Mm Hs PIEZO2 0.006 0 0.614 0.001 0.004 3 Trigeminal neurons Ectoderm Brain FLJ23403,FLJ23144,HsT748,HsT771,FLJ34907,FAM38B2,C18orf30,C18orf58,FAM38B piezo type mechanosensitive ion channel component 2 Yflag
0
Mm Hs VAMP1 0.003 0 0 0 0 1 Trigeminal neurons Ectoderm Brain VAMP-1,SYB1 vesicle associated membrane protein 1 Yflag
0
Mm Hs SCN10A 0.003 0 0 0 0 1 Trigeminal neurons Ectoderm Brain Nav1.8,hPN3,SNS,PN3 sodium voltage-gated channel alpha subunit 10 Yflag
0
Mm Hs TAC1 0.01 0 0 0.005 0 6 Trigeminal neurons Ectoderm Brain NPK,TAC2,NKNA tachykinin precursor 1 flag
0
Mm Hs PRKX 0.009 0 0.33 0.009 0.008 1 Trigeminal neurons Ectoderm Brain PKX1 protein kinase X-linked flag
0
Mm Hs PRDM12 0.002 0 0.443 0 0 1 Trigeminal neurons Ectoderm Brain PFM9 PR/SET domain 12 Yflag
0
Mm Hs DHCR24 0.018 0 0.261 0.06 0.004 1 Trigeminal neurons Ectoderm Brain KIAA0018,seladin-1,DCE 24-dehydrocholesterol reductase Yflag
0
Mm Hs CALCA 0.004 0 0.534 0.001 0.002 2 Trigeminal neurons Ectoderm Brain CALC1 calcitonin related polypeptide alpha flag
0
Mm Hs CALCB 0.003 0 0.523 0 0.001 1 Trigeminal neurons Ectoderm Brain FLJ30166,CGRP-II,CALC2 calcitonin related polypeptide beta flag
0
Mm Hs VWA5A 0.011 0 0 0.009 0 2 Trigeminal neurons Ectoderm Brain BCSC-1,LOH11CR2A von Willebrand factor A domain containing 5A flag
0
Mm PRRXL1 0.004 0 0.75 0 0 1 Trigeminal neurons Ectoderm Brain paired related homeobox protein-like 1 flag
0
Mm Hs PPP1R1C 0.008 0 0.818 0.019 0.002 1 Trigeminal neurons Ectoderm Brain Inhibitor-1-like protein phosphatase 1 regulatory inhibitor subunit 1C flag
0
Mm Hs AVIL 0.005 0 0.807 0 0.002 2 Trigeminal neurons Ectoderm Brain p92,FLJ12386,ADVIL,DOC6 advillin flag
0
Mm Hs PIRT 0.005 0 0.886 0 0.002 2 Trigeminal neurons Ectoderm Brain phosphoinositide interacting regulator of transient receptor potential channels flag
0
Mm Hs AHNAK2 0.019 0 0.716 0.008 0.018 2 Trigeminal neurons Ectoderm Brain C14orf78 AHNAK nucleoprotein 2 flag
0
Mm Hs PRPH 0.011 0 1 0.024 0.003 2 Trigeminal neurons Ectoderm Brain PRPH1,NEF4 peripherin Yflag
0
Mm Hs SCN9A 0.011 0 0 0.004 0 2 Trigeminal neurons Ectoderm Brain Nav1.7,NE-NA,NENA,ETHA sodium voltage-gated channel alpha subunit 9 Yflag
0
Mm Hs RUFY2 0.013 0 0 0.01 0 1 Trigeminal neurons Ectoderm Brain RABIP4R,FLJ10063,KIAA1537,ZFYVE13 RUN and FYVE domain containing 2 flag
0
Mm Hs FAM189B 0.013 0 0.909 0.009 0.008 1 Trigeminal neurons Ectoderm Brain cote1,C1orf2 family with sequence similarity 189 member B flag
0
Mm Hs CLGN 0.014 0 0.705 0.024 0.008 2 Trigeminal neurons Ectoderm Brain calmegin flag
0
Mm Hs GCNT2 0.015 0 0.693 0.011 0.012 2 Trigeminal neurons Ectoderm Brain IGNT,NAGCT1,bA421M1.1,bA360O19.2,ULG3,NACGT1,II,GCNT5,CCAT glucosaminyl (N-acetyl) transferase 2 (I blood group) Yflag
0
Mm Hs ZDHHC2 0.015 0 0 0.006 0 2 Trigeminal neurons Ectoderm Brain ZNF372,DHHC2 zinc finger DHHC-type containing 2 flag
0
Mm Hs PARM1 0.02 0 0.705 0.019 0.017 4 Trigeminal neurons Ectoderm Brain DKFZP564O0823,Cipar1,WSC4 prostate androgen-regulated mucin-like protein 1 flag
-1
Mm Hs NEFM 0.028 0 0.852 0.02 0.024 5 Trigeminal neurons Ectoderm Brain NFM,NF-M,NEF3 neurofilament medium flag
-1
Mm Hs SCN7A 0.017 0 0 0.008 0 4 Trigeminal neurons Ectoderm Brain Nav2.1,Nav2.2,NaG,SCN6A sodium voltage-gated channel alpha subunit 7 flag
-1
Mm Hs NEFH 0.009 0 0.67 0.004 0.007 3 Trigeminal neurons Ectoderm Brain neurofilament heavy Yflag

Datasets with computationally identified Trigeminal neurons

SRA SRS tissue cluster cell type p-value FDR View
SRA593403 SRS2392264 Trigeminal neurons 0 Trigeminal neurons 1.59E-27 6.22E-25 view data
SRA593403 SRS2392264 Trigeminal neurons 1 Trigeminal neurons 2.01E-27 6.29E-25 view data
SRA593403 SRS2392264 Trigeminal neurons 2 Trigeminal neurons 7.45E-36 1.17E-32 view data
SRA593403 SRS2392264 Trigeminal neurons 3 Trigeminal neurons 8.73E-31 6.84E-28 view data
SRA593403 SRS2392264 Trigeminal neurons 4 Trigeminal neurons 6.85E-24 1.65E-21 view data
SRA593403 SRS2392264 Trigeminal neurons 5 Trigeminal neurons 8.25E-30 4.30E-27 view data
SRA593403 SRS2392264 Trigeminal neurons 8 Trigeminal neurons 7.37E-24 1.65E-21 view data
SRA593403 SRS2392266 Trigeminal neurons 0 Trigeminal neurons 1.17E-24 2.89E-22 view data
SRA593403 SRS2392266 Trigeminal neurons 1 Trigeminal neurons 1.95E-27 5.61E-25 view data
SRA593403 SRS2392266 Trigeminal neurons 2 Trigeminal neurons 2.24E-33 1.93E-30 view data
SRA593403 SRS2392266 Trigeminal neurons 3 Trigeminal neurons 1.60E-36 2.78E-33 view data
SRA593403 SRS2392266 Trigeminal neurons 4 Trigeminal neurons 3.27E-31 1.41E-28 view data
SRA593403 SRS2392266 Trigeminal neurons 6 Trigeminal neurons 1.49E-28 5.17E-26 view data
SRA593403 SRS2392266 Trigeminal neurons 7 Trigeminal neurons 9.40E-33 5.42E-30 view data
SRA593403 SRS2392266 Trigeminal neurons 8 Trigeminal neurons 4.51E-24 9.76E-22 view data
SRA667466 SRS3060058 Sympathetic nervous system 5 Trigeminal neurons 1.98E-10 6.40E-8 view data
SRA593403 SRS2392265 Trigeminal neurons 0 Trigeminal neurons 9.61E-25 2.80E-22 view data
SRA593403 SRS2392265 Trigeminal neurons 2 Trigeminal neurons 1.76E-34 1.54E-31 view data
SRA593403 SRS2392265 Trigeminal neurons 3 Trigeminal neurons 1.24E-31 5.44E-29 view data
SRA593403 SRS2392265 Trigeminal neurons 4 Trigeminal neurons 6.89E-36 1.21E-32 view data
SRA593403 SRS2392265 Trigeminal neurons 5 Trigeminal neurons 9.26E-29 3.24E-26 view data
SRA593403 SRS2392265 Trigeminal neurons 7 Trigeminal neurons 1.19E-20 2.60E-18 view data
SRA593403 SRS2392265 Trigeminal neurons 8 Trigeminal neurons 1.10E-33 6.45E-31 view data
SRA593403 SRS2392265 Trigeminal neurons 9 Trigeminal neurons 3.75E-21 9.37E-19 view data
SRA815945 SRS4088994 Nerve 1 Trigeminal neurons 4.07E-5 3.73E-3 view data
SRA815945 SRS4088994 Nerve 2 Trigeminal neurons 1.22E-21 5.13E-19 view data
SRA815945 SRS4088994 Nerve 4 Trigeminal neurons 6.13E-24 3.74E-21 view data
SRA815945 SRS4088994 Nerve 6 Trigeminal neurons 6.28E-21 2.46E-18 view data
SRA815945 SRS4088994 Nerve 7 Trigeminal neurons 3.49E-12 6.83E-10 view data
SRA815945 SRS4088994 Nerve 8 Trigeminal neurons 2.36E-27 1.62E-24 view data
SRA815945 SRS4088994 Nerve 10 Trigeminal neurons 1.56E-20 5.71E-18 view data
SRA815945 SRS4088994 Nerve 11 Trigeminal neurons 5.98E-33 8.20E-30 view data
SRA815945 SRS4088994 Nerve 12 Trigeminal neurons 9.94E-13 2.18E-10 view data
SRA815945 SRS4088994 Nerve 14 Trigeminal neurons 3.62E-19 1.17E-16 view data
SRA815945 SRS4088994 Nerve 15 Trigeminal neurons 8.45E-28 6.62E-25 view data
SRA815945 SRS4088994 Nerve 18 Trigeminal neurons 5.22E-34 9.54E-31 view data
SRA815945 SRS4088994 Nerve 19 Trigeminal neurons 6.71E-28 6.13E-25 view data
SRA815945 SRS4088994 Nerve 20 Trigeminal neurons 4.50E-32 4.93E-29 view data
SRA815945 SRS4088994 Nerve 22 Trigeminal neurons 4.21E-37 2.31E-33 view data
SRA815945 SRS4088994 Nerve 26 Trigeminal neurons 6.98E-35 1.91E-31 view data
SRA815945 SRS4088994 Nerve 29 Trigeminal neurons 5.97E-7 7.12E-5 view data
SRA593403 SRS2392271 Trigeminal neurons 0 Trigeminal neurons 4.54E-20 1.29E-17 view data
SRA593403 SRS2392271 Trigeminal neurons 3 Trigeminal neurons 2.40E-33 2.05E-30 view data
SRA593403 SRS2392271 Trigeminal neurons 4 Trigeminal neurons 8.32E-30 3.56E-27 view data
SRA593403 SRS2392267 Trigeminal neurons 1 Trigeminal neurons 7.00E-37 4.95E-34 view data
SRA593403 SRS2392267 Trigeminal neurons 3 Trigeminal neurons 4.23E-38 5.99E-35 view data
SRA593403 SRS2392267 Trigeminal neurons 7 Trigeminal neurons 4.48E-30 2.11E-27 view data
SRA593403 SRS2392269 Trigeminal neurons 1 Trigeminal neurons 4.47E-34 3.16E-31 view data
SRA593403 SRS2392269 Trigeminal neurons 2 Trigeminal neurons 4.09E-37 7.29E-34 view data
SRA593403 SRS2392269 Trigeminal neurons 6 Trigeminal neurons 5.23E-36 6.17E-33 view data
SRA593403 SRS2392269 Trigeminal neurons 9 Trigeminal neurons 1.03E-35 9.12E-33 view data
SRA593403 SRS2392269 Trigeminal neurons 10 Trigeminal neurons 2.21E-25 1.30E-22 view data
SRA593403 SRS2392269 Trigeminal neurons 15 Trigeminal neurons 4.12E-37 7.29E-34 view data
SRA593403 SRS2392269 Trigeminal neurons 16 Trigeminal neurons 1.70E-16 4.30E-14 view data
SRA593403 SRS2392269 Trigeminal neurons 19 Trigeminal neurons 1.00E-24 5.06E-22 view data
SRA593403 SRS2392268 Trigeminal neurons 4 Trigeminal neurons 7.13E-39 1.52E-35 view data
SRA593403 SRS2392268 Trigeminal neurons 9 Trigeminal neurons 1.33E-26 7.06E-24 view data
SRA593403 SRS2392268 Trigeminal neurons 11 Trigeminal neurons 4.73E-30 5.03E-27 view data
SRA593403 SRS2392272 Trigeminal neurons 2 Trigeminal neurons 1.16E-38 1.01E-35 view data
SRA593403 SRS2392272 Trigeminal neurons 3 Trigeminal neurons 1.76E-38 1.02E-35 view data
SRA593403 SRS2392272 Trigeminal neurons 4 Trigeminal neurons 2.13E-33 9.25E-31 view data
SRA593403 SRS2392272 Trigeminal neurons 5 Trigeminal neurons 2.07E-29 7.19E-27 view data
SRA593403 SRS2392272 Trigeminal neurons 7 Trigeminal neurons 5.31E-28 1.54E-25 view data
SRA667466 SRS3059942 Dorsal root ganglion 4 Trigeminal neurons 6.57E-29 1.73E-25 view data
SRA667466 SRS3059942 Dorsal root ganglion 6 Trigeminal neurons 3.25E-25 4.29E-22 view data
SRA667466 SRS3059942 Dorsal root ganglion 7 Trigeminal neurons 1.09E-24 9.57E-22 view data
SRA667466 SRS3059942 Dorsal root ganglion 8 Trigeminal neurons 6.84E-24 4.51E-21 view data
SRA667466 SRS3059942 Dorsal root ganglion 9 Trigeminal neurons 3.25E-23 1.71E-20 view data
SRA667466 SRS3059942 Dorsal root ganglion 13 Trigeminal neurons 1.64E-19 7.21E-17 view data
SRA667466 SRS3059994 Dorsal root ganglion 1 Trigeminal neurons 4.58E-31 4.83E-28 view data
SRA667466 SRS3059994 Dorsal root ganglion 2 Trigeminal neurons 1.56E-24 6.19E-22 view data
SRA667466 SRS3059994 Dorsal root ganglion 6 Trigeminal neurons 3.47E-32 5.50E-29 view data
SRA667466 SRS3059994 Dorsal root ganglion 7 Trigeminal neurons 5.81E-22 2.04E-19 view data
SRA667466 SRS3059994 Dorsal root ganglion 8 Trigeminal neurons 5.13E-30 4.07E-27 view data
SRA667466 SRS3059994 Dorsal root ganglion 9 Trigeminal neurons 8.06E-28 5.11E-25 view data
SRA667466 SRS3059994 Dorsal root ganglion 10 Trigeminal neurons 2.50E-27 1.32E-24 view data
SRA667466 SRS3059994 Dorsal root ganglion 11 Trigeminal neurons 5.49E-26 2.49E-23 view data
SRA667466 SRS3059994 Dorsal root ganglion 12 Trigeminal neurons 9.75E-19 3.09E-16 view data
SRA667466 SRS3059994 Dorsal root ganglion 13 Trigeminal neurons 4.28E-33 1.36E-29 view data
SRA667466 SRS3060017 Spinal cord 7 Trigeminal neurons 2.21E-13 8.84E-11 view data
SRA667466 SRS3060017 Spinal cord 14 Trigeminal neurons 6.21E-8 1.82E-5 view data
SRA667466 SRS3060017 Spinal cord 15 Trigeminal neurons 1.12E-6 2.75E-4 view data
SRA667466 SRS3060017 Spinal cord 19 Trigeminal neurons 8.59E-8 2.36E-5 view data
SRA593403 SRS2392270 Trigeminal neurons 0 Trigeminal neurons 7.15E-41 1.26E-37 view data
SRA593403 SRS2392270 Trigeminal neurons 2 Trigeminal neurons 1.13E-33 6.65E-31 view data
SRA593403 SRS2392270 Trigeminal neurons 4 Trigeminal neurons 4.96E-23 1.75E-20 view data
SRA593403 SRS2392270 Trigeminal neurons 7 Trigeminal neurons 1.25E-35 1.10E-32 view data
SRA593403 SRS2392270 Trigeminal neurons 8 Trigeminal neurons 7.63E-33 3.36E-30 view data