Substantia nigra-ventral tegmental area
SRA SRA323017
SRS 6665 records (too many to list)
SRR notused
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol C1 Fluidigm
Instrument Illumina HiSeq 2000
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq Yes
Number of cells 1,051
Number of exp. genes 35,579 (median number of expressed genes per cell=3877)
Number of clusters
Tissue Substantia nigra-ventral tegmental area
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=substantia nigra-ventral tegmental area|tissue=substantia nigra-ventral tegmental area|Sex=pooled male and female|age=p24|strain=CD1|inferred cell type=DA-VTA4|;GSM2274539: 1772099012_E04; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 13.3 Mb)
data download (RPKM, R sparse data object, 35.7 Mb)
Cell clustering results
Putative cell types Endothelial cells (brain), Neurons, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.