SRA SRA431419
SRS 3774 records (too many to list)
SRR notused
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol Smart-seq2
Instrument NextSeq 500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq Yes
Number of cells 1,208
Number of exp. genes 36,522 (median number of expressed genes per cell=6098)
Number of clusters 7
Tissue Striatum
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=striatum|experiment=OGC16-sal|major cell type=Neuron|protocol=FACS-scRNA-Seq|;GSM2190169: H9_1000701204-OGC16-sal_1_4ul_1 OGC16-sal FACS-scRNA-Seq; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 24.4 Mb)
data download (RPKM, R sparse data object, 61.4 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Macrophages, Microglia, Neurons, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.