Hypothalamus
SRA SRA481537
SRS SRS1724933
SRR SRR4340030
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol drop-seq
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 526
Number of exp. genes 21,356 (median number of expressed genes per cell=1392)
Number of clusters 5
Tissue Hypothalamus
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=normal_hypothalamus|strain background=B6D2F1 (C57BL6 female X DBA2 male)|mouse id=mouse 2|mouse status=normal|tissue=hypothalamus|;GSM2333585: B1-normal-#3-800cells; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 4.3 Mb)
Cell clustering results
Putative cell types Endothelial cells (brain), Macrophages, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.