Hypothalamus
SRA SRA481537
SRS SRS1724938
SRR SRR4340037
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol drop-seq
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 1,636
Number of exp. genes 25,474 (median number of expressed genes per cell=1330)
Number of clusters 11
Tissue Hypothalamus
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=food deprived_hypothalamus|strain background=B6D2F1 (C57BL6 female X DBA2 male)|mouse id=mouse 2|mouse status=food deprived|tissue=hypothalamus|;GSM2333590: B2-FD-#3-2200cells; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 11.4 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Macrophages, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.