Hypothalamus
SRA SRA481537
SRS SRS1724940
SRR SRR4340038,SRR4340039,SRR4340040
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol drop-seq
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 758
Number of exp. genes 20,615 (median number of expressed genes per cell=1248)
Number of clusters 9
Tissue Hypothalamus
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=normal_hypothalamus|strain background=B6D2F1 (C57BL6 female X DBA2 male)|mouse id=mouse 1|mouse status=normal|tissue=hypothalamus|;GSM2333591: B3-Normal-#1-1200cells; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 3.6 Mb)
Cell clustering results
Putative cell types Endothelial cells (brain), Ependymal cells, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.