Small intestine
SRA SRA508949
SRS SRS1876796
SRR SRR5127959
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument NextSeq 500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 913
Number of exp. genes 19,515 (median number of expressed genes per cell=2514)
Number of clusters 7
Tissue Small intestine
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=LGR5_ECD|strain=Lgr5-eGFP-IRES-CreER|tissue=small intestine|cell type=Lgr5-eGFP(+) cells|treatment=Ad LGR5 ECD|condition=Rspo LOF|
Gene search
Download Count matrix (raw read counts, R sparse data object, 5.3 Mb)
Cell clustering results
Putative cell types Enterocytes, Paneth cells, T memory cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.