Arcuate-median eminence
SRA SRA526019
SRS SRS1913121
SRR SRR5164436
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol drop-seq
Instrument NextSeq 500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 3,169
Number of exp. genes 26,864 (median number of expressed genes per cell=1324)
Number of clusters 19
Tissue Arcuate-median eminence
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=Arcuate Nucleus/Median Eminence|strain=C57BL6/J|tissue=Arcuate-Median Eminence|Sex=male|average age=34|number of mice pooled=7|experimental condition=Ad lib fed chow diet|batch=Batch 1|;GSM2452122: Drop-Seq analysis of Pooled Arc-ME single-cell suspension_ad lib Chow_1; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 18.9 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Fibroblasts (brain), Interneurons, Macrophages, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.