Arcuate-median eminence
SRA SRA526019
SRS SRS1913125
SRR SRR5164440
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol drop-seq
Instrument NextSeq 500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 3,426
Number of exp. genes 27,235 (median number of expressed genes per cell=1565)
Number of clusters 19
Tissue Arcuate-median eminence
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Arcuate Nucleus/Median Eminence|strain=C57BL6/J|tissue=Arcuate-Median Eminence|Sex=male|average age=47|number of mice pooled=4|experimental condition=Ad lib fed 60% High fat diet|batch=Batch 4|;GSM2452126: Drop-Seq analysis of Pooled Arc-ME single-cell suspension_ad lib 60% high fat diet fed_1; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 18.2 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Interneurons, Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.