Arcuate-median eminence
SRA SRA526019
SRS SRS1913127
SRR SRR5164442
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol drop-seq
Instrument NextSeq 500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 1,779
Number of exp. genes 22,660 (median number of expressed genes per cell=1027)
Number of clusters 12
Tissue Arcuate-median eminence
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Arcuate Nucleus/Median Eminence|strain=C57BL6/J|tissue=Arcuate-Median Eminence|Sex=male and female|average age=75|number of mice pooled=7 (4 male, 3 female)|experimental condition=24 hour fast + 2 hour refeeding|batch=Batch 5|;GSM2452128: Drop-Seq analysis of Pooled Arc-ME single-cell suspension_24 hour fast_refed_1; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 19.6 Mb)
Cell clustering results
Putative cell types Astrocytes, Endothelial cells (brain), Ependymal cells, Interneurons, Neurons, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.