Cortex, hippocampus and subventricular zone
SRA SRA526435
SRS SRS1915143
SRR SRR5259355
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 4000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 10,399
Number of exp. genes 30,104 (median number of expressed genes per cell=2071)
Number of clusters 17
Tissue Cortex, hippocampus and subventricular zone
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=E18 mouse brain cells|tissue=Cortex, hippocampus and subventricular zone|developmental stage=E18|condition=Healthy|strain=C57BL/6|;GSM2453063: E18_20160930_Neurons_Sample_22; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 53.8 Mb)
Cell clustering results
Putative cell types Cajal-Retzius cells, Endothelial cells (brain), Erythroid-like and erythroid precursor cells, Immature neurons, Macrophages, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.