Cortex, hippocampus and subventricular zone
SRA SRA526435
SRS SRS1915150
SRR SRR5259361
Species Mus musculus
Sample (strain, genotype, etc.) C57BL/6
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 4000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 10,035
Number of exp. genes 29,732 (median number of expressed genes per cell=2064)
Number of clusters 20
Tissue Cortex, hippocampus and subventricular zone
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=E18 mouse brain cells|tissue=Cortex, hippocampus and subventricular zone|developmental stage=E18|condition=Healthy|strain=C57BL/6|;GSM2453069: E18_20160930_Neurons_Sample_29; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 51.7 Mb)
Cell clustering results
Putative cell types Cajal-Retzius cells, Endothelial cells (brain), Epithelial cells, Erythroid-like and erythroid precursor cells, Immature neurons, Macrophages, Pericytes, Radial glia cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.