Cortex, hippocampus and subventricular zone
SRA SRA526435
SRS SRS1915204
SRR SRR5259420
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol 10x chromium
Instrument Illumina HiSeq 4000
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 11,023
Number of exp. genes 29,527 (median number of expressed genes per cell=1957)
Number of clusters 20
Tissue Cortex, hippocampus and subventricular zone
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=E18 mouse brain cells|tissue=Cortex, hippocampus and subventricular zone|developmental stage=E18|condition=Healthy|strain=C57BL/6|;GSM2453121: E18_20161004_Neurons_Sample_10; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 51.9 Mb)
Cell clustering results
Putative cell types Endothelial cells (brain), Erythroid-like and erythroid precursor cells, Macrophages, Pericytes, Radial glia cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.