Cortex, hippocampus and subventricular zone
| SRA | SRA526435 |
| SRS | SRS1915244 |
| SRR | SRR5259460 |
| Species | Mus musculus |
| Sample (strain, genotype, etc.) | |
| Tumor | |
| Protocol | 10x chromium |
| Instrument | Illumina HiSeq 4000 |
| Read length (bp) | |
| Single or paired-end | PAIRED |
| Full-length mRNA-seq | No |
| Number of cells | 11,007 |
| Number of exp. genes | 28,862 (median number of expressed genes per cell=1826) |
| Number of clusters | 20 |
| Tissue | Cortex, hippocampus and subventricular zone |
| Cell line (Y/N) | No |
| Primary adult tissue (Y/N) | No |
| Target cell population | |
| Metadata (raw) | source_name=E18 mouse brain cells|tissue=Cortex, hippocampus and subventricular zone|developmental stage=E18|condition=Healthy|strain=C57BL/6|;GSM2453161: E18_20161004_Neurons_Sample_50; Mus musculus; RNA-Seq |
| Gene search |
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| Download |
Count matrix (raw read counts, R sparse data object, 48.6 Mb)
Cell clustering results |
| Putative cell types | Cajal-Retzius cells, Endothelial cells (brain), Erythroid-like and erythroid precursor cells, Macrophages, Pericytes, Unknown list all |
2d projection view
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Gene not found. It could be because it has no detectable expression or the gene does not exist.