Dentate gyrus
SRA SRA541804
SRS 5454 records (too many to list)
SRR notused
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq Yes
Number of cells 4,684
Number of exp. genes 27,314 (median number of expressed genes per cell=1520)
Number of clusters 12
Tissue Dentate gyrus
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) source_name=dentate gyrus, postnatal day 16|strain/background=CD-1|genotype/variation=wild type|postnatal day=16|tissue=dentate gyrus|cell cluster=Neuroblast2|;GSM2507149: 10X46_1_TTTGCATGTGCACA-1; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 22.9 Mb)
data download (RPKM, R sparse data object, 69.1 Mb)
Cell clustering results
Putative cell types Astrocytes, Cajal-Retzius cells, Endothelial cells (brain), Microglia, Neurons, Oligodendrocyte progenitor cells, Oligodendrocytes list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.