Aortic leukocytes
SRA SRA550869
SRS SRS2747909
SRR SRR6363507
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end PAIRED
Full-length mRNA-seq No
Number of cells 1,090
Number of exp. genes 20,895 (median number of expressed genes per cell=1781)
Number of clusters 9
Tissue Aortic leukocytes
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Leukocytes|strain/background=C57BL/6J|genotype/variation=Ldlr-/-|Sex=male|tissue=aorta|cell type=leukocytes|cell marker=CD45+|treatment=11 weeks high fat, high cholesterol diet|
Gene search
Download Count matrix (raw read counts, R sparse data object, 5.2 Mb)
Cell clustering results
Putative cell types B cells, Macrophages, Neutrophils, T cells, T memory cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.