Stomach organoid
SRA SRA555753
SRS SRS2135626
SRR SRR5461661
Species Mus musculus
Sample (strain, genotype, etc.)
Protocol 10x chromium
Instrument Illumina HiSeq 2500
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq No
Number of cells 2,603
Number of exp. genes 24,490 (median number of expressed genes per cell=1870)
Number of clusters 7
Tissue Stomach organoid
Cell line (Y/N) No
Primary adult tissue (Y/N) No
Target cell population
Metadata (raw) strain=B6.129P2-Trp53tm1Brn/J|isolate=M44_1|dev_stage=Neonatal|sex=not collected|tissue=Stomach|genotype=p53LoxP|sample_type=RNA|BioSampleModel=Model organism or animal|;scRNA-seq of mus musculus: stomach organoid
Gene search
Download Count matrix (raw read counts, R sparse data object, 43.3 Mb)
Cell clustering results
Putative cell types Ependymal cells, Fibroblasts, Foveolar cells, Oval cells, Unknown list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.