Brain
SRA SRA561344
SRS 3186 records (too many to list)
SRR notused
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol Smart-seq2
Instrument Illumina HiSeq 2000
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq Yes
Number of cells 3,186
Number of exp. genes 44,375 (median number of expressed genes per cell=2911)
Number of clusters 8
Tissue Brain
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population
Metadata (raw) source_name=Brain|strain=C57BL/6|tissue=brain|age=adult mice 12 to 15 weeks old|genotype=Pdgfra-H2BGFP|;GSM2615724: Brain single cell 3186; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 35.1 Mb)
data download (RPKM, R sparse data object, 88.5 Mb)
Cell clustering results
Putative cell types Endothelial cells (brain), Fibroblasts, Microglia, Oligodendrocytes, Pericytes, Smooth muscle cells list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.