Brain
SRA SRA566512
SRS 250 records (too many to list)
SRR notused
Species Mus musculus
Sample (strain, genotype, etc.)
Tumor
Protocol Smart-seq2
Instrument Illumina HiSeq 2000
Read length (bp)
Single or paired-end SINGLE
Full-length mRNA-seq Yes
Number of cells 250
Number of exp. genes 25,821 (median number of expressed genes per cell=3295)
Number of clusters 1
Tissue Brain
Cell line (Y/N) No
Primary adult tissue (Y/N) Yes
Target cell population Astrocytes
Metadata (raw) source_name=Brain|strain=C57BL/6|tissue=brain|age=adult mice|genotype=SM22-Cre;Rosa26-stop-tdTomato|;GSM2631678: Brain astrocyte single cell 250; Mus musculus; RNA-Seq
Gene search
Download Count matrix (raw read counts, R sparse data object, 3.1 Mb)
data download (RPKM, R sparse data object, 7.6 Mb)
Cell clustering results
Putative cell types Bergmann glia list all
2d projection view
× Gene not found. It could be because it has no detectable expression or the gene does not exist.